2HJQA

Nmr structure of bacillus subtilis protein yqbf, northeast structural genomics target sr449
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
111
structure length
111
Chain Sequence
MFTAKLIKGKTYNVMGITFRAGVSQTVPKKLYEYLNENPYFILTQELNNQKDDPINYTESELKGMNKAEHESIISNLGRNPSDFKNADERIAYILKQIDNKGELEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics
molecule keywords Hypothetical protein yqbF
publication title NMR Structure of Bacillus Subtilis Protein YqbF, Northeast Structural Genomics Target SR449
rcsb
source organism Bacillus subtilis
total genus 23
structure length 111
sequence length 111
ec nomenclature
pdb deposition date 2006-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14553 YqbF YqbF, hypothetical protein domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.10 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 2hjqA02
3.40.5.20 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L9; domain 1 YqbF domain 2hjqA01
2HJQA 1E7LA 1A62A 2QNFA 1A63A 3L0OA 1E7DA 1A8VA 2A8VA 1EN7A 2QNCA
chains in the Genus database with same CATH superfamily
4FSDA 5GHRB 2LD7A 3L0OA 2LC3A 5GHSC 3REEA 5EG5A 1A62A 4F1EA 1KHCA 4FR0A 2MPHA 1ZS9A 2JVWA 1ZBHA 5CIUA 2KW9A 3FLGA 4OO7A 1E7DA 2OUTA 2HJQA 3FNDA 1E7LA 3EW0A 1A63A 4KW7A 2KVEA 1JEQA 2KVUA 1H9FA 1JEIA 2W51A 2DK4A 3CO4A 2QH7A 2RNOA 2WQGA 4UY8H 2E9XB 1JJRA 4F28A 1H9EA 4OOAA 2KVDA 4UZWA 3S2QA 1GKUB 2KFVA 4BITA 2Q9QB 2ODCI 3J7ZH 1Y02A 2G80A 2ODGC 4RSRA 4EZFA 1DIVA 1V66A 2R13A 2QNFA 2X49A 1A8VA 2A8VA 2Q9QA 2EHOC 2HBAA 2HBBA 3LLRA 2E9XD 3TBOA 2RNNA 2HVFA 1H1JS 2QD0A 3FNVA 2LSMA 1CQUA 3TBNA 2X4AA 3QKJA 4F2CA 2QNCA 3S2RA 1GJJA 1YNSA 1GL9B 3ANWA 1EN7A 3LPQA 4FS8A
chains in the Genus database with same CATH topology
2HJQA 1E7LA 1A63A 2LD7A 1H9EA 3L0OA 2LC3A 1GKUB 2KFVA 1A62A 2ODCI 1H9FA 1JEIA 1Y02A 2G80A 2ODGC 2W51A 2DK4A 2MPHA 1ZS9A 2QNCA 1GJJA 1YNSA 2QNFA 1GL9B 1E7DA 1A8VA 2A8VA 1EN7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HJQ A;  1E7L A;  1A62 A;  2QNF A;  1A63 A;  3L0O A;  1E7D A;  1A8V A;  2A8V A;  1EN7 A;  2QNC A; 
#chains in the Genus database with same CATH topology
 4FSD A;  5GHR B;  2LD7 A;  3L0O A;  2LC3 A;  5GHS C;  3REE A;  5EG5 A;  1A62 A;  4F1E A;  1KHC A;  4FR0 A;  2MPH A;  1ZS9 A;  2JVW A;  1ZBH A;  5CIU A;  2KW9 A;  3FLG A;  4OO7 A;  1E7D A;  2OUT A;  2HJQ A;  3FND A;  1E7L A;  3EW0 A;  1A63 A;  4KW7 A;  2KVE A;  1JEQ A;  2KVU A;  1H9F A;  1JEI A;  2W51 A;  2DK4 A;  3CO4 A;  2QH7 A;  2RNO A;  2WQG A;  4UY8 H;  2E9X B;  1JJR A;  4F28 A;  1H9E A;  4OOA A;  2KVD A;  4UZW A;  3S2Q A;  1GKU B;  2KFV A;  4BIT A;  2Q9Q B;  2ODC I;  3J7Z H;  1Y02 A;  2G80 A;  2ODG C;  4RSR A;  4EZF A;  1DIV A;  1V66 A;  2R13 A;  2QNF A;  2X49 A;  1A8V A;  2A8V A;  2Q9Q A;  2EHO C;  2HBA A;  2HBB A;  3LLR A;  2E9X D;  3TBO A;  2RNN A;  2HVF A;  1H1J S;  2QD0 A;  3FNV A;  2LSM A;  1CQU A;  3TBN A;  2X4A A;  3QKJ A;  4F2C A;  2QNC A;  3S2R A;  1GJJ A;  1YNS A;  1GL9 B;  3ANW A;  1EN7 A;  3LPQ A;  4FS8 A; 
#chains in the Genus database with same CATH homology
 2HJQ A;  1E7L A;  1A63 A;  2LD7 A;  1H9E A;  3L0O A;  2LC3 A;  1GKU B;  2KFV A;  1A62 A;  2ODC I;  1H9F A;  1JEI A;  1Y02 A;  2G80 A;  2ODG C;  2W51 A;  2DK4 A;  2MPH A;  1ZS9 A;  2QNC A;  1GJJ A;  1YNS A;  2QNF A;  1GL9 B;  1E7D A;  1A8V A;  2A8V A;  1EN7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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