2HM2Q

Solution structure of asc2
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
89
structure length
89
Chain Sequence
MGTKREAILKVLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQLDIVDLTDKLVASYYEDYAAELVVAVLRDMRMLEEAARLQRAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Pyrin-only protein 1
publication title Structure and dynamics of ASC2, a pyrin domain-only protein that regulates inflammatory signaling
pubmed doi rcsb
source organism Homo sapiens
total genus 27
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Q PF02758 PYRIN PAAD/DAPIN/Pyrin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2hm2Q00
4FH0A 4EWIA 1CWWA 4N1JA 4A2QA 2MS8A 3J63A 3MOPK 1CY5A 3LQRA 3QF2A 2LWDA 2N00A 2BBZA 2A9IA 2D96A 4JUPA 4RHWE 4ZBWA 3LQQA 2M5VA 2N1FA 1E41A 2DBDA 2MS7A 2DO9A 4LWDA 2DBGA 3T6PA 2MPCA 4IZ7B 1C15A 1UCPA 4NQKA 2MB9A 1ICHA 2NAQA 1DGNA 2P1HA 1A1ZA 2BBRA 4O9LA 2YGSA 2HM2Q 2G7RA 4DWNA 4N1LA 1FADA 2N83A 1A1WA 1D2ZA 4M9ZA 1PN5A 1NGRA 1E3YA 3KATA 2IB1A 2L9MA 4M9XA 2YQFA 4P4HA 2O71A 1N3KA 1D2ZB 3EZQB 2YU0A 4QOBA 4A2WA 2KM6A 3YGSC 4O9FA 1Z6TA 4F42A 4F44A 3YGSP 2KN6A 4RHWA 2F1SA 2L6AA 1DDFA 4IZ5E 3EZQA 4IZAB 4N1KA 2B1WA 2DBFA 1WMGA 2LWEA 4O7QA 3J6JA 2LS7A 2VGQA 1WXPA 4P4HI 4M9SA 2GF5A 2N97A 3MOPG 3MOPA 2DBHA 4I16A 3CL3A 4D8OA 2N7ZA 2MN4A 2A5YB 4JQWA 2OF5H 4E9MA 4O6XA 1WH4A 2OF5A 2N80A 1YGOA 2NSNA 2YVIA 4UZ0A 2NZ7A 3CRDA
chains in the Genus database with same CATH superfamily
4FH0A 4EWIA 1CWWA 4N1JA 4A2QA 2MS8A 3J63A 3MOPK 1CY5A 3LQRA 3QF2A 2LWDA 2N00A 2BBZA 2A9IA 2D96A 4JUPA 4RHWE 4ZBWA 3LQQA 2M5VA 2N1FA 1E41A 2DBDA 2MS7A 2DO9A 4LWDA 2DBGA 3T6PA 2MPCA 4IZ7B 1C15A 1UCPA 4NQKA 2MB9A 1ICHA 2NAQA 1DGNA 2P1HA 1A1ZA 2BBRA 4O9LA 2YGSA 2HM2Q 2G7RA 4DWNA 4N1LA 1FADA 2N83A 1A1WA 1D2ZA 4M9ZA 1PN5A 1NGRA 1E3YA 3KATA 2IB1A 2L9MA 4M9XA 2YQFA 2MJMA 4P4HA 2O71A 1N3KA 1D2ZB 3EZQB 2YU0A 4QOBA 4A2WA 2KM6A 2XV9A 3YGSC 4O9FA 1Z6TA 4F42A 4F44A 3YGSP 2KN6A 4RHWA 2F1SA 2L6AA 1DDFA 4IZ5E 3EZQA 4IZAB 4N1KA 2B1WA 2DBFA 1WMGA 2LWEA 4O7QA 3J6JA 2LS7A 2VGQA 1WXPA 4P4HI 4M9SA 2GF5A 2N97A 3MOPG 3MOPA 2DBHA 4I16A 3CL3A 4D8OA 2N7ZA 2MN4A 2A5YB 4JQWA 2OF5H 4E9MA 4O6XA 1WH4A 2OF5A 2N80A 1YGOA 2NSNA 2YVIA 4UZ0A 2NZ7A 3CRDA
chains in the Genus database with same CATH topology
4FH0A 4EWIA 1CWWA 4N1JA 4A2QA 2MS8A 3J63A 3MOPK 1CY5A 3LQRA 3QF2A 2LWDA 2N00A 2BBZA 2A9IA 2D96A 4JUPA 4RHWE 4ZBWA 3LQQA 2M5VA 2N1FA 1E41A 2DBDA 2MS7A 2DO9A 4LWDA 2DBGA 3T6PA 2MPCA 4IZ7B 1C15A 1UCPA 4NQKA 2MB9A 1ICHA 2NAQA 1DGNA 2P1HA 1A1ZA 2BBRA 4O9LA 2YGSA 2HM2Q 2G7RA 4DWNA 4N1LA 1FADA 2N83A 1A1WA 1D2ZA 4M9ZA 1PN5A 1NGRA 1E3YA 3KATA 2IB1A 2L9MA 4M9XA 2YQFA 2MJMA 4P4HA 2O71A 1N3KA 1D2ZB 3EZQB 2YU0A 4QOBA 4A2WA 2KM6A 2XV9A 3YGSC 4O9FA 1Z6TA 4F42A 4F44A 3YGSP 2KN6A 4RHWA 2F1SA 2L6AA 1DDFA 4IZ5E 3EZQA 4IZAB 4N1KA 2B1WA 2DBFA 1WMGA 2LWEA 4O7QA 3J6JA 2LS7A 2VGQA 1WXPA 4P4HI 4M9SA 2GF5A 2N97A 3MOPG 3MOPA 2DBHA 4I16A 3CL3A 4D8OA 2N7ZA 2MN4A 2A5YB 4JQWA 2OF5H 4E9MA 4O6XA 1WH4A 2OF5A 2N80A 1YGOA 2NSNA 2YVIA 4UZ0A 2NZ7A 3CRDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FH0 A;  4EWI A;  1CWW A;  4N1J A;  4A2Q A;  2MS8 A;  3J63 A;  3MOP K;  1CY5 A;  3LQR A;  3QF2 A;  2LWD A;  2N00 A;  2BBZ A;  2A9I A;  2D96 A;  4JUP A;  4RHW E;  4ZBW A;  3LQQ A;  2M5V A;  2N1F A;  1E41 A;  2DBD A;  2MS7 A;  2DO9 A;  4LWD A;  2DBG A;  3T6P A;  2MPC A;  4IZ7 B;  1C15 A;  1UCP A;  4NQK A;  2MB9 A;  1ICH A;  2NAQ A;  1DGN A;  2P1H A;  1A1Z A;  2BBR A;  4O9L A;  2YGS A;  2HM2 Q;  2G7R A;  4DWN A;  4N1L A;  1FAD A;  2N83 A;  1A1W A;  1D2Z A;  4M9Z A;  1PN5 A;  1NGR A;  1E3Y A;  3KAT A;  2IB1 A;  2L9M A;  4M9X A;  2YQF A;  4P4H A;  2O71 A;  1N3K A;  1D2Z B;  3EZQ B;  2YU0 A;  4QOB A;  4A2W A;  2KM6 A;  3YGS C;  4O9F A;  1Z6T A;  4F42 A;  4F44 A;  3YGS P;  2KN6 A;  4RHW A;  2F1S A;  2L6A A;  1DDF A;  4IZ5 E;  3EZQ A;  4IZA B;  4N1K A;  2B1W A;  2DBF A;  1WMG A;  2LWE A;  4O7Q A;  3J6J A;  2LS7 A;  2VGQ A;  1WXP A;  4P4H I;  4M9S A;  2GF5 A;  2N97 A;  3MOP G;  3MOP A;  2DBH A;  4I16 A;  3CL3 A;  4D8O A;  2N7Z A;  2MN4 A;  2A5Y B;  4JQW A;  2OF5 H;  4E9M A;  4O6X A;  1WH4 A;  2OF5 A;  2N80 A;  1YGO A;  2NSN A;  2YVI A;  4UZ0 A;  2NZ7 A;  3CRD A; 
#chains in the Genus database with same CATH topology
 4FH0 A;  4EWI A;  1CWW A;  4N1J A;  4A2Q A;  2MS8 A;  3J63 A;  3MOP K;  1CY5 A;  3LQR A;  3QF2 A;  2LWD A;  2N00 A;  2BBZ A;  2A9I A;  2D96 A;  4JUP A;  4RHW E;  4ZBW A;  3LQQ A;  2M5V A;  2N1F A;  1E41 A;  2DBD A;  2MS7 A;  2DO9 A;  4LWD A;  2DBG A;  3T6P A;  2MPC A;  4IZ7 B;  1C15 A;  1UCP A;  4NQK A;  2MB9 A;  1ICH A;  2NAQ A;  1DGN A;  2P1H A;  1A1Z A;  2BBR A;  4O9L A;  2YGS A;  2HM2 Q;  2G7R A;  4DWN A;  4N1L A;  1FAD A;  2N83 A;  1A1W A;  1D2Z A;  4M9Z A;  1PN5 A;  1NGR A;  1E3Y A;  3KAT A;  2IB1 A;  2L9M A;  4M9X A;  2YQF A;  2MJM A;  4P4H A;  2O71 A;  1N3K A;  1D2Z B;  3EZQ B;  2YU0 A;  4QOB A;  4A2W A;  2KM6 A;  2XV9 A;  3YGS C;  4O9F A;  1Z6T A;  4F42 A;  4F44 A;  3YGS P;  2KN6 A;  4RHW A;  2F1S A;  2L6A A;  1DDF A;  4IZ5 E;  3EZQ A;  4IZA B;  4N1K A;  2B1W A;  2DBF A;  1WMG A;  2LWE A;  4O7Q A;  3J6J A;  2LS7 A;  2VGQ A;  1WXP A;  4P4H I;  4M9S A;  2GF5 A;  2N97 A;  3MOP G;  3MOP A;  2DBH A;  4I16 A;  3CL3 A;  4D8O A;  2N7Z A;  2MN4 A;  2A5Y B;  4JQW A;  2OF5 H;  4E9M A;  4O6X A;  1WH4 A;  2OF5 A;  2N80 A;  1YGO A;  2NSN A;  2YVI A;  4UZ0 A;  2NZ7 A;  3CRD A; 
#chains in the Genus database with same CATH homology
 4FH0 A;  4EWI A;  1CWW A;  4N1J A;  4A2Q A;  2MS8 A;  3J63 A;  3MOP K;  1CY5 A;  3LQR A;  3QF2 A;  2LWD A;  2N00 A;  2BBZ A;  2A9I A;  2D96 A;  4JUP A;  4RHW E;  4ZBW A;  3LQQ A;  2M5V A;  2N1F A;  1E41 A;  2DBD A;  2MS7 A;  2DO9 A;  4LWD A;  2DBG A;  3T6P A;  2MPC A;  4IZ7 B;  1C15 A;  1UCP A;  4NQK A;  2MB9 A;  1ICH A;  2NAQ A;  1DGN A;  2P1H A;  1A1Z A;  2BBR A;  4O9L A;  2YGS A;  2HM2 Q;  2G7R A;  4DWN A;  4N1L A;  1FAD A;  2N83 A;  1A1W A;  1D2Z A;  4M9Z A;  1PN5 A;  1NGR A;  1E3Y A;  3KAT A;  2IB1 A;  2L9M A;  4M9X A;  2YQF A;  2MJM A;  4P4H A;  2O71 A;  1N3K A;  1D2Z B;  3EZQ B;  2YU0 A;  4QOB A;  4A2W A;  2KM6 A;  2XV9 A;  3YGS C;  4O9F A;  1Z6T A;  4F42 A;  4F44 A;  3YGS P;  2KN6 A;  4RHW A;  2F1S A;  2L6A A;  1DDF A;  4IZ5 E;  3EZQ A;  4IZA B;  4N1K A;  2B1W A;  2DBF A;  1WMG A;  2LWE A;  4O7Q A;  3J6J A;  2LS7 A;  2VGQ A;  1WXP A;  4P4H I;  4M9S A;  2GF5 A;  2N97 A;  3MOP G;  3MOP A;  2DBH A;  4I16 A;  3CL3 A;  4D8O A;  2N7Z A;  2MN4 A;  2A5Y B;  4JQW A;  2OF5 H;  4E9M A;  4O6X A;  1WH4 A;  2OF5 A;  2N80 A;  1YGO A;  2NSN A;  2YVI A;  4UZ0 A;  2NZ7 A;  3CRD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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