2HMKA

Crystal structure of naphthalene 1,2-dioxygenase bound to phenanthrene
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
total genus 162
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmkA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmkA01
3H1LE 3L72E 1VM9A 2HMKA 3GKEA 4NBFA 1RFSA 2BMOA 1SQQE 4NBCD 2QJYC 3VCAA 2YVJB 1FQTA 3H1KE 4QDCA 3BCCE 4EMJB 2FYNC 1O7NA 2XRXA 2I7FA 3FOUA 1PP9E 2DE6D 4PD4E 4NBAD 1L0NE 1WW9A 3TGUE 4HM8A 2HMOA 5BOKA 2DE7A 1SQPE 4NB8A 1NDOA 2Q3WA 3L74E 3GCFA 4HJLA 3H1IE 4NBHA 2GBWA 4NBED 2CKFA 1Q90C 4HM5A 3CX5E 3EN1A 2NVGA 4NBCA 1KB9E 3H1JE 5AEUA 2NUKA 3GCEA 4QURA 5KKZC 2E76D 2E4PA 3GZYA 1WQLA 4NBBD 2BMQA 3GL0A 3GTEA 1Z03A 3AZCA 4OGQD 4NBAA 4NB9D 2JZAA 4NBGD 4P1BH 2E4QA 1EZVE 4HM7A 1UUWA 3VCPA 1BCCE 4HKVA 3VMHD 2XR8A 3GB4A 4NBEA 2FYUE 4HM1A 1EG9A 1VF5D 3GZXA 5HL4A 1KYOE 2NVFA 1ZRTE 2NUMA 1O7PA 4HM4A 4NBDD 2HMNA 2NWFA 4PV1D 5KLIC 2QPZA 1JM1A 4H0LD 2QJPC 4H44D 1SQBE 2QJKC 3GKQA 4NBFD 4NBBA 2D2CD 4HM0A 4AAYB 4NB9A 2BCCE 2E75D 2YFJA 3DQYA 4NBGA 1Z02A 2HMMA 1G8JB 5AEWA 1NYKA 4QDFA 2XSOA 3CWBE 4H13D 4P1CH 2DE6A 4QUPA 3VMHA 1PPJE 1RIEA 3L73E 1ULIA 1VCKA 2JO6A 3VMGD 3VMID 3CXHE 1G8KB 1O7HA 4NBDA 2YFIA 4HM6A 2BMRA 2GBXA 2HMJA 2NVEA 2YIUC 3L71E 4HM3A 4NBHD 2DE5D 4QDDA 2HMLA 3C0DA 4HM2A 2ZYLA 1Z01A 2B1XA 3H1HE 1O7WA 1NU1E 1NTME 1NTKE 5KLVE 2A06E 1SQVE 1NTZE 3GL2A 3L75E 4U3FE 4QCKA 1O7MA 2XSHA 2ZT9D 3D89A 3N0QA 5CXMA 3VMIA 1UUVA 3VMGA 1P84E 3GTSA 2B24A 3EQQA 4QDFB 1O7GA 2IBZE 1BE3E 2YFLA 1ULJA 3GOBA 1L0LE 4QUQA 2DE7D 1SJGA 2DE5A 4NB8D 3L70E 4AIVA 1SQXE 2E74D
chains in the Genus database with same CATH superfamily
3H1LE 3L72E 1VM9A 2HMKA 3GKEA 4NBFA 1RFSA 2BMOA 1SQQE 4NBCD 2QJYC 3VCAA 2YVJB 1FQTA 3H1KE 4QDCA 3BCCE 4EMJB 2FYNC 1O7NA 2XRXA 2I7FA 3FOUA 1PP9E 2DE6D 4PD4E 4NBAD 1L0NE 1WW9A 3TGUE 4HM8A 2HMOA 5BOKA 2DE7A 1SQPE 4NB8A 1NDOA 2Q3WA 3L74E 3GCFA 4HJLA 3H1IE 4NBHA 2GBWA 4NBED 2CKFA 1Q90C 4HM5A 3CX5E 3EN1A 2NVGA 4NBCA 1KB9E 3H1JE 5AEUA 2NUKA 3GCEA 4QURA 5KKZC 2E76D 2E4PA 3GZYA 1WQLA 4NBBD 2BMQA 3GL0A 3GTEA 1Z03A 3AZCA 4OGQD 4NBAA 4NB9D 2JZAA 4NBGD 4P1BH 2E4QA 1EZVE 4HM7A 1UUWA 3VCPA 1BCCE 4HKVA 3VMHD 2XR8A 3GB4A 4NBEA 2FYUE 4HM1A 1EG9A 1VF5D 3GZXA 5HL4A 1KYOE 2NVFA 1ZRTE 2NUMA 1O7PA 4HM4A 4NBDD 2HMNA 2NWFA 4PV1D 5KLIC 2QPZA 1JM1A 4H0LD 2QJPC 4H44D 1SQBE 2QJKC 3GKQA 4NBFD 4NBBA 2D2CD 4HM0A 4AAYB 4NB9A 2BCCE 2E75D 2YFJA 3DQYA 4NBGA 1Z02A 2HMMA 1G8JB 5AEWA 1NYKA 4QDFA 2XSOA 3CWBE 4H13D 4P1CH 2DE6A 4QUPA 3VMHA 1PPJE 1RIEA 3L73E 1ULIA 1VCKA 2JO6A 3VMGD 3VMID 3CXHE 1G8KB 1O7HA 4NBDA 2YFIA 4HM6A 2BMRA 2GBXA 2HMJA 2NVEA 2YIUC 3L71E 4HM3A 4NBHD 2DE5D 4QDDA 2HMLA 3C0DA 4HM2A 2ZYLA 1Z01A 2B1XA 3H1HE 1O7WA 1NU1E 1NTME 1NTKE 5KLVE 2A06E 1SQVE 1NTZE 3GL2A 3L75E 4U3FE 4QCKA 1O7MA 2XSHA 2ZT9D 3D89A 3N0QA 5CXMA 3VMIA 1UUVA 3VMGA 1P84E 3GTSA 2B24A 3EQQA 4QDFB 1O7GA 2IBZE 1BE3E 2YFLA 1ULJA 3GOBA 1L0LE 4QUQA 2DE7D 1SJGA 2DE5A 4NB8D 3L70E 4AIVA 1SQXE 2E74D
chains in the Genus database with same CATH topology
3H1LE 3L72E 1VM9A 2HMKA 3GKEA 4NBFA 1RFSA 2BMOA 1SQQE 4NBCD 2QJYC 3VCAA 2YVJB 1FQTA 3H1KE 4QDCA 3BCCE 4EMJB 2FYNC 1O7NA 2XRXA 2I7FA 3FOUA 1PP9E 2DE6D 4PD4E 4NBAD 1L0NE 1WW9A 3TGUE 4HM8A 2HMOA 5BOKA 2DE7A 1SQPE 4NB8A 1NDOA 2Q3WA 3L74E 3GCFA 4HJLA 3H1IE 4NBHA 2GBWA 4NBED 2CKFA 1Q90C 4HM5A 3CX5E 3EN1A 2NVGA 4NBCA 1KB9E 3H1JE 5AEUA 2NUKA 3GCEA 4QURA 5KKZC 2E76D 2E4PA 3GZYA 1WQLA 4NBBD 2BMQA 3GL0A 3GTEA 1Z03A 3AZCA 4OGQD 4NBAA 4NB9D 2JZAA 4NBGD 4P1BH 2E4QA 1EZVE 4HM7A 1UUWA 3VCPA 1BCCE 4HKVA 3VMHD 2XR8A 3GB4A 4NBEA 2FYUE 4HM1A 1EG9A 1VF5D 3GZXA 5HL4A 1KYOE 2NVFA 1ZRTE 2NUMA 1O7PA 4HM4A 4NBDD 2HMNA 2NWFA 4PV1D 5KLIC 2QPZA 1JM1A 4H0LD 2QJPC 4H44D 1SQBE 2QJKC 3GKQA 4NBFD 4NBBA 2D2CD 4HM0A 4AAYB 4NB9A 2BCCE 2E75D 2YFJA 3DQYA 4NBGA 1Z02A 2HMMA 1G8JB 5AEWA 1NYKA 4QDFA 2XSOA 3CWBE 4H13D 4P1CH 2DE6A 4QUPA 3VMHA 1PPJE 1RIEA 3L73E 1ULIA 1VCKA 2JO6A 3VMGD 3VMID 3CXHE 1G8KB 1O7HA 4NBDA 2YFIA 4HM6A 2BMRA 2GBXA 2HMJA 2NVEA 2YIUC 3L71E 4HM3A 4NBHD 2DE5D 4QDDA 2HMLA 3C0DA 4HM2A 2ZYLA 1Z01A 2B1XA 3H1HE 1O7WA 1NU1E 1NTME 1NTKE 5KLVE 2A06E 1SQVE 1NTZE 3GL2A 3L75E 4U3FE 4QCKA 1O7MA 2XSHA 2ZT9D 3D89A 3N0QA 5CXMA 3VMIA 1UUVA 3VMGA 1P84E 3GTSA 2B24A 3EQQA 4QDFB 1O7GA 2IBZE 1BE3E 2YFLA 1ULJA 3GOBA 1L0LE 4QUQA 2DE7D 1SJGA 2DE5A 4NB8D 3L70E 4AIVA 1SQXE 2E74D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H1L E;  3L72 E;  1VM9 A;  2HMK A;  3GKE A;  4NBF A;  1RFS A;  2BMO A;  1SQQ E;  4NBC D;  2QJY C;  3VCA A;  2YVJ B;  1FQT A;  3H1K E;  4QDC A;  3BCC E;  4EMJ B;  2FYN C;  1O7N A;  2XRX A;  2I7F A;  3FOU A;  1PP9 E;  2DE6 D;  4PD4 E;  4NBA D;  1L0N E;  1WW9 A;  3TGU E;  4HM8 A;  2HMO A;  5BOK A;  2DE7 A;  1SQP E;  4NB8 A;  1NDO A;  2Q3W A;  3L74 E;  3GCF A;  4HJL A;  3H1I E;  4NBH A;  2GBW A;  4NBE D;  2CKF A;  1Q90 C;  4HM5 A;  3CX5 E;  3EN1 A;  2NVG A;  4NBC A;  1KB9 E;  3H1J E;  5AEU A;  2NUK A;  3GCE A;  4QUR A;  5KKZ C;  2E76 D;  2E4P A;  3GZY A;  1WQL A;  4NBB D;  2BMQ A;  3GL0 A;  3GTE A;  1Z03 A;  3AZC A;  4OGQ D;  4NBA A;  4NB9 D;  2JZA A;  4NBG D;  4P1B H;  2E4Q A;  1EZV E;  4HM7 A;  1UUW A;  3VCP A;  1BCC E;  4HKV A;  3VMH D;  2XR8 A;  3GB4 A;  4NBE A;  2FYU E;  4HM1 A;  1EG9 A;  1VF5 D;  3GZX A;  5HL4 A;  1KYO E;  2NVF A;  1ZRT E;  2NUM A;  1O7P A;  4HM4 A;  4NBD D;  2HMN A;  2NWF A;  4PV1 D;  5KLI C;  2QPZ A;  1JM1 A;  4H0L D;  2QJP C;  4H44 D;  1SQB E;  2QJK C;  3GKQ A;  4NBF D;  4NBB A;  2D2C D;  4HM0 A;  4AAY B;  4NB9 A;  2BCC E;  2E75 D;  2YFJ A;  3DQY A;  4NBG A;  1Z02 A;  2HMM A;  1G8J B;  5AEW A;  1NYK A;  4QDF A;  2XSO A;  3CWB E;  4H13 D;  4P1C H;  2DE6 A;  4QUP A;  3VMH A;  1PPJ E;  1RIE A;  3L73 E;  1ULI A;  1VCK A;  2JO6 A;  3VMG D;  3VMI D;  3CXH E;  1G8K B;  1O7H A;  4NBD A;  2YFI A;  4HM6 A;  2BMR A;  2GBX A;  2HMJ A;  2NVE A;  2YIU C;  3L71 E;  4HM3 A;  4NBH D;  2DE5 D;  4QDD A;  2HML A;  3C0D A;  4HM2 A;  2ZYL A;  1Z01 A;  2B1X A;  3H1H E;  1O7W A;  1NU1 E;  1NTM E;  1NTK E;  5KLV E;  2A06 E;  1SQV E;  1NTZ E;  3GL2 A;  3L75 E;  4U3F E;  4QCK A;  1O7M A;  2XSH A;  2ZT9 D;  3D89 A;  3N0Q A;  5CXM A;  3VMI A;  1UUV A;  3VMG A;  1P84 E;  3GTS A;  2B24 A;  3EQQ A;  4QDF B;  1O7G A;  2IBZ E;  1BE3 E;  2YFL A;  1ULJ A;  3GOB A;  1L0L E;  4QUQ A;  2DE7 D;  1SJG A;  2DE5 A;  4NB8 D;  3L70 E;  4AIV A;  1SQX E;  2E74 D; 
#chains in the Genus database with same CATH topology
 3H1L E;  3L72 E;  1VM9 A;  2HMK A;  3GKE A;  4NBF A;  1RFS A;  2BMO A;  1SQQ E;  4NBC D;  2QJY C;  3VCA A;  2YVJ B;  1FQT A;  3H1K E;  4QDC A;  3BCC E;  4EMJ B;  2FYN C;  1O7N A;  2XRX A;  2I7F A;  3FOU A;  1PP9 E;  2DE6 D;  4PD4 E;  4NBA D;  1L0N E;  1WW9 A;  3TGU E;  4HM8 A;  2HMO A;  5BOK A;  2DE7 A;  1SQP E;  4NB8 A;  1NDO A;  2Q3W A;  3L74 E;  3GCF A;  4HJL A;  3H1I E;  4NBH A;  2GBW A;  4NBE D;  2CKF A;  1Q90 C;  4HM5 A;  3CX5 E;  3EN1 A;  2NVG A;  4NBC A;  1KB9 E;  3H1J E;  5AEU A;  2NUK A;  3GCE A;  4QUR A;  5KKZ C;  2E76 D;  2E4P A;  3GZY A;  1WQL A;  4NBB D;  2BMQ A;  3GL0 A;  3GTE A;  1Z03 A;  3AZC A;  4OGQ D;  4NBA A;  4NB9 D;  2JZA A;  4NBG D;  4P1B H;  2E4Q A;  1EZV E;  4HM7 A;  1UUW A;  3VCP A;  1BCC E;  4HKV A;  3VMH D;  2XR8 A;  3GB4 A;  4NBE A;  2FYU E;  4HM1 A;  1EG9 A;  1VF5 D;  3GZX A;  5HL4 A;  1KYO E;  2NVF A;  1ZRT E;  2NUM A;  1O7P A;  4HM4 A;  4NBD D;  2HMN A;  2NWF A;  4PV1 D;  5KLI C;  2QPZ A;  1JM1 A;  4H0L D;  2QJP C;  4H44 D;  1SQB E;  2QJK C;  3GKQ A;  4NBF D;  4NBB A;  2D2C D;  4HM0 A;  4AAY B;  4NB9 A;  2BCC E;  2E75 D;  2YFJ A;  3DQY A;  4NBG A;  1Z02 A;  2HMM A;  1G8J B;  5AEW A;  1NYK A;  4QDF A;  2XSO A;  3CWB E;  4H13 D;  4P1C H;  2DE6 A;  4QUP A;  3VMH A;  1PPJ E;  1RIE A;  3L73 E;  1ULI A;  1VCK A;  2JO6 A;  3VMG D;  3VMI D;  3CXH E;  1G8K B;  1O7H A;  4NBD A;  2YFI A;  4HM6 A;  2BMR A;  2GBX A;  2HMJ A;  2NVE A;  2YIU C;  3L71 E;  4HM3 A;  4NBH D;  2DE5 D;  4QDD A;  2HML A;  3C0D A;  4HM2 A;  2ZYL A;  1Z01 A;  2B1X A;  3H1H E;  1O7W A;  1NU1 E;  1NTM E;  1NTK E;  5KLV E;  2A06 E;  1SQV E;  1NTZ E;  3GL2 A;  3L75 E;  4U3F E;  4QCK A;  1O7M A;  2XSH A;  2ZT9 D;  3D89 A;  3N0Q A;  5CXM A;  3VMI A;  1UUV A;  3VMG A;  1P84 E;  3GTS A;  2B24 A;  3EQQ A;  4QDF B;  1O7G A;  2IBZ E;  1BE3 E;  2YFL A;  1ULJ A;  3GOB A;  1L0L E;  4QUQ A;  2DE7 D;  1SJG A;  2DE5 A;  4NB8 D;  3L70 E;  4AIV A;  1SQX E;  2E74 D; 
#chains in the Genus database with same CATH homology
 3H1L E;  3L72 E;  1VM9 A;  2HMK A;  3GKE A;  4NBF A;  1RFS A;  2BMO A;  1SQQ E;  4NBC D;  2QJY C;  3VCA A;  2YVJ B;  1FQT A;  3H1K E;  4QDC A;  3BCC E;  4EMJ B;  2FYN C;  1O7N A;  2XRX A;  2I7F A;  3FOU A;  1PP9 E;  2DE6 D;  4PD4 E;  4NBA D;  1L0N E;  1WW9 A;  3TGU E;  4HM8 A;  2HMO A;  5BOK A;  2DE7 A;  1SQP E;  4NB8 A;  1NDO A;  2Q3W A;  3L74 E;  3GCF A;  4HJL A;  3H1I E;  4NBH A;  2GBW A;  4NBE D;  2CKF A;  1Q90 C;  4HM5 A;  3CX5 E;  3EN1 A;  2NVG A;  4NBC A;  1KB9 E;  3H1J E;  5AEU A;  2NUK A;  3GCE A;  4QUR A;  5KKZ C;  2E76 D;  2E4P A;  3GZY A;  1WQL A;  4NBB D;  2BMQ A;  3GL0 A;  3GTE A;  1Z03 A;  3AZC A;  4OGQ D;  4NBA A;  4NB9 D;  2JZA A;  4NBG D;  4P1B H;  2E4Q A;  1EZV E;  4HM7 A;  1UUW A;  3VCP A;  1BCC E;  4HKV A;  3VMH D;  2XR8 A;  3GB4 A;  4NBE A;  2FYU E;  4HM1 A;  1EG9 A;  1VF5 D;  3GZX A;  5HL4 A;  1KYO E;  2NVF A;  1ZRT E;  2NUM A;  1O7P A;  4HM4 A;  4NBD D;  2HMN A;  2NWF A;  4PV1 D;  5KLI C;  2QPZ A;  1JM1 A;  4H0L D;  2QJP C;  4H44 D;  1SQB E;  2QJK C;  3GKQ A;  4NBF D;  4NBB A;  2D2C D;  4HM0 A;  4AAY B;  4NB9 A;  2BCC E;  2E75 D;  2YFJ A;  3DQY A;  4NBG A;  1Z02 A;  2HMM A;  1G8J B;  5AEW A;  1NYK A;  4QDF A;  2XSO A;  3CWB E;  4H13 D;  4P1C H;  2DE6 A;  4QUP A;  3VMH A;  1PPJ E;  1RIE A;  3L73 E;  1ULI A;  1VCK A;  2JO6 A;  3VMG D;  3VMI D;  3CXH E;  1G8K B;  1O7H A;  4NBD A;  2YFI A;  4HM6 A;  2BMR A;  2GBX A;  2HMJ A;  2NVE A;  2YIU C;  3L71 E;  4HM3 A;  4NBH D;  2DE5 D;  4QDD A;  2HML A;  3C0D A;  4HM2 A;  2ZYL A;  1Z01 A;  2B1X A;  3H1H E;  1O7W A;  1NU1 E;  1NTM E;  1NTK E;  5KLV E;  2A06 E;  1SQV E;  1NTZ E;  3GL2 A;  3L75 E;  4U3F E;  4QCK A;  1O7M A;  2XSH A;  2ZT9 D;  3D89 A;  3N0Q A;  5CXM A;  3VMI A;  1UUV A;  3VMG A;  1P84 E;  3GTS A;  2B24 A;  3EQQ A;  4QDF B;  1O7G A;  2IBZ E;  1BE3 E;  2YFL A;  1ULJ A;  3GOB A;  1L0L E;  4QUQ A;  2DE7 D;  1SJG A;  2DE5 A;  4NB8 D;  3L70 E;  4AIV A;  1SQX E;  2E74 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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