2HMKA

Crystal structure of naphthalene 1,2-dioxygenase bound to phenanthrene
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
446
structure length
446
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
total genus 162
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmkA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmkA01
4NB9D 1WQLA 2B1XA 4NBED 2E76D 5CXMA 4NBGA 3L73E 3EQQA 4NBHD 1Z03A 2D2CD 2NWFA 4QCKA 4QURA 3GOBA 3L72E 1VF5D 4QUPA 2I7FA 4HM7A 5KKZC 4HM6A 4AIVA 2DE7D 3TGUE 2DE5D 1O7GA 4HKVA 4QDFB 2DE6D 2HMNA 2HMJA 1BCCE 2QPZA 4NB8A 1WW9A 2XR8A 4P1BH 1UUVA 3L75E 4NBFA 4NBCA 4NBDA 3BCCE 1NTZE 1NDOA 1ULIA 4HM3A 3VCPA 3VMID 5BOKA 1SQQE 2Q3WA 4PV1D 3H1JE 3VMHA 1NTME 4NB9A 1BE3E 4NBEA 2FYNC 2GBXA 3H1HE 3GZYA 4NBHA 1L0LE 2CKFA 2B24A 4HM5A 2IBZE 2A06E 2BMRA 3H1IE 2BMOA 5KLIC 2ZT9D 2FYUE 3GTSA 1Z01A 2NVFA 2XSOA 1ULJA 2BCCE 1NU1E 2E4PA 2NUKA 2DE7A 2BMQA 2DE5A 1KYOE 1UUWA 2QJPC 4PD4E 2DE6A 1EG9A 2GBWA 1SQXE 3VCAA 4H13D 4H0LD 1SJGA 4P1CH 3CWBE 2YVJB 1O7PA 4H44D 5KLVE 2NVEA 3GL2A 2QJKC 4NBAD 1G8KB 1PPJE 4HM0A 2HMLA 3L71E 4HM1A 2JO6A 3D89A 3CX5E 1JM1A 2NVGA 2QJYC 3H1LE 3VMIA 1Q90C 3GKQA 2E75D 4QDCA 2YFIA 1Z02A 2ZYLA 4OGQD 3GB4A 1NYKA 1P84E 4AAYB 3GKEA 3VMGD 4NBBD 3C0DA 3GTEA 5AEUA 1VCKA 3FOUA 4NBGD 2HMKA 2XSHA 3CXHE 4HM4A 4QDDA 4EMJB 3GCEA 5AEWA 2XRXA 2YFLA 1VM9A 1KB9E 4U3FE 1FQTA 1ZRTE 1O7WA 2HMOA 3H1KE 3L74E 4HM8A 3EN1A 4NBAA 2YIUC 4HM2A 1SQPE 3AZCA 1SQBE 3DQYA 4QUQA 4NB8D 2NUMA 1O7HA 4HJLA 1RIEA 3GCFA 1O7NA 3GZXA 3GL0A 3N0QA 3L70E 1L0NE 2E4QA 4NBFD 4NBCD 4NBDD 2HMMA 1EZVE 1RFSA 1PP9E 2JZAA 1G8JB 1SQVE 1O7MA 3VMGA 2YFJA 4NBBA 5HL4A 2E74D 4QDFA 1NTKE 3VMHD
chains in the Genus database with same CATH superfamily
4NB9D 1WQLA 2B1XA 4NBED 2E76D 5CXMA 4NBGA 3L73E 3EQQA 4NBHD 1Z03A 2D2CD 2NWFA 4QCKA 4QURA 3GOBA 3L72E 1VF5D 4QUPA 2I7FA 4HM7A 5KKZC 4HM6A 4AIVA 2DE7D 3TGUE 2DE5D 1O7GA 4HKVA 4QDFB 2DE6D 2HMNA 2HMJA 1BCCE 2QPZA 4NB8A 1WW9A 2XR8A 4P1BH 1UUVA 3L75E 4NBFA 4NBCA 4NBDA 3BCCE 1NTZE 1NDOA 1ULIA 4HM3A 3VCPA 3VMID 5BOKA 1SQQE 2Q3WA 4PV1D 3H1JE 3VMHA 1NTME 4NB9A 1BE3E 4NBEA 2FYNC 2GBXA 3H1HE 3GZYA 4NBHA 1L0LE 2CKFA 2B24A 4HM5A 2IBZE 2A06E 2BMRA 3H1IE 2BMOA 5KLIC 2ZT9D 2FYUE 3GTSA 1Z01A 2NVFA 2XSOA 1ULJA 2BCCE 1NU1E 2E4PA 2NUKA 2DE7A 2BMQA 2DE5A 1KYOE 1UUWA 2QJPC 4PD4E 2DE6A 1EG9A 2GBWA 1SQXE 3VCAA 4H13D 4H0LD 1SJGA 4P1CH 3CWBE 2YVJB 1O7PA 4H44D 5KLVE 2NVEA 3GL2A 2QJKC 4NBAD 1G8KB 1PPJE 4HM0A 2HMLA 3L71E 4HM1A 2JO6A 3D89A 3CX5E 1JM1A 2NVGA 2QJYC 3H1LE 3VMIA 1Q90C 3GKQA 2E75D 4QDCA 2YFIA 1Z02A 2ZYLA 4OGQD 3GB4A 1NYKA 1P84E 4AAYB 3GKEA 3VMGD 4NBBD 3C0DA 3GTEA 5AEUA 1VCKA 3FOUA 4NBGD 2HMKA 2XSHA 3CXHE 4HM4A 4QDDA 4EMJB 3GCEA 5AEWA 2XRXA 2YFLA 1VM9A 1KB9E 4U3FE 1FQTA 1ZRTE 1O7WA 2HMOA 3H1KE 3L74E 4HM8A 3EN1A 4NBAA 2YIUC 4HM2A 1SQPE 3AZCA 1SQBE 3DQYA 4QUQA 4NB8D 2NUMA 1O7HA 4HJLA 1RIEA 3GCFA 1O7NA 3GZXA 3GL0A 3N0QA 3L70E 1L0NE 2E4QA 4NBFD 4NBCD 4NBDD 2HMMA 1EZVE 1RFSA 1PP9E 2JZAA 1G8JB 1SQVE 1O7MA 3VMGA 2YFJA 4NBBA 5HL4A 2E74D 4QDFA 1NTKE 3VMHD
chains in the Genus database with same CATH topology
4NB9D 1WQLA 2B1XA 4NBED 2E76D 5CXMA 4NBGA 3L73E 3EQQA 4NBHD 1Z03A 2D2CD 2NWFA 4QCKA 4QURA 3GOBA 3L72E 1VF5D 4QUPA 2I7FA 4HM7A 5KKZC 4HM6A 4AIVA 2DE7D 3TGUE 2DE5D 1O7GA 4HKVA 4QDFB 2DE6D 2HMNA 2HMJA 1BCCE 2QPZA 4NB8A 1WW9A 2XR8A 4P1BH 1UUVA 3L75E 4NBFA 4NBCA 4NBDA 3BCCE 1NTZE 1NDOA 1ULIA 4HM3A 3VCPA 3VMID 5BOKA 1SQQE 2Q3WA 4PV1D 3H1JE 3VMHA 1NTME 4NB9A 1BE3E 4NBEA 2FYNC 2GBXA 3H1HE 3GZYA 4NBHA 1L0LE 2CKFA 2B24A 4HM5A 2IBZE 2A06E 2BMRA 3H1IE 2BMOA 5KLIC 2ZT9D 2FYUE 3GTSA 1Z01A 2NVFA 2XSOA 1ULJA 2BCCE 1NU1E 2E4PA 2NUKA 2DE7A 2BMQA 2DE5A 1KYOE 1UUWA 2QJPC 4PD4E 2DE6A 1EG9A 2GBWA 1SQXE 3VCAA 4H13D 4H0LD 1SJGA 4P1CH 3CWBE 2YVJB 1O7PA 4H44D 5KLVE 2NVEA 3GL2A 2QJKC 4NBAD 1G8KB 1PPJE 4HM0A 2HMLA 3L71E 4HM1A 2JO6A 3D89A 3CX5E 1JM1A 2NVGA 2QJYC 3H1LE 3VMIA 1Q90C 3GKQA 2E75D 4QDCA 2YFIA 1Z02A 2ZYLA 4OGQD 3GB4A 1NYKA 1P84E 4AAYB 3GKEA 3VMGD 4NBBD 3C0DA 3GTEA 5AEUA 1VCKA 3FOUA 4NBGD 2HMKA 2XSHA 3CXHE 4HM4A 4QDDA 4EMJB 3GCEA 5AEWA 2XRXA 2YFLA 1VM9A 1KB9E 4U3FE 1FQTA 1ZRTE 1O7WA 2HMOA 3H1KE 3L74E 4HM8A 3EN1A 4NBAA 2YIUC 4HM2A 1SQPE 3AZCA 1SQBE 3DQYA 4QUQA 4NB8D 2NUMA 1O7HA 4HJLA 1RIEA 3GCFA 1O7NA 3GZXA 3GL0A 3N0QA 3L70E 1L0NE 2E4QA 4NBFD 4NBCD 4NBDD 2HMMA 1EZVE 1RFSA 1PP9E 2JZAA 1G8JB 1SQVE 1O7MA 3VMGA 2YFJA 4NBBA 5HL4A 2E74D 4QDFA 1NTKE 3VMHD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NB9 D;  1WQL A;  2B1X A;  4NBE D;  2E76 D;  5CXM A;  4NBG A;  3L73 E;  3EQQ A;  4NBH D;  1Z03 A;  2D2C D;  2NWF A;  4QCK A;  4QUR A;  3GOB A;  3L72 E;  1VF5 D;  4QUP A;  2I7F A;  4HM7 A;  5KKZ C;  4HM6 A;  4AIV A;  2DE7 D;  3TGU E;  2DE5 D;  1O7G A;  4HKV A;  4QDF B;  2DE6 D;  2HMN A;  2HMJ A;  1BCC E;  2QPZ A;  4NB8 A;  1WW9 A;  2XR8 A;  4P1B H;  1UUV A;  3L75 E;  4NBF A;  4NBC A;  4NBD A;  3BCC E;  1NTZ E;  1NDO A;  1ULI A;  4HM3 A;  3VCP A;  3VMI D;  5BOK A;  1SQQ E;  2Q3W A;  4PV1 D;  3H1J E;  3VMH A;  1NTM E;  4NB9 A;  1BE3 E;  4NBE A;  2FYN C;  2GBX A;  3H1H E;  3GZY A;  4NBH A;  1L0L E;  2CKF A;  2B24 A;  4HM5 A;  2IBZ E;  2A06 E;  2BMR A;  3H1I E;  2BMO A;  5KLI C;  2ZT9 D;  2FYU E;  3GTS A;  1Z01 A;  2NVF A;  2XSO A;  1ULJ A;  2BCC E;  1NU1 E;  2E4P A;  2NUK A;  2DE7 A;  2BMQ A;  2DE5 A;  1KYO E;  1UUW A;  2QJP C;  4PD4 E;  2DE6 A;  1EG9 A;  2GBW A;  1SQX E;  3VCA A;  4H13 D;  4H0L D;  1SJG A;  4P1C H;  3CWB E;  2YVJ B;  1O7P A;  4H44 D;  5KLV E;  2NVE A;  3GL2 A;  2QJK C;  4NBA D;  1G8K B;  1PPJ E;  4HM0 A;  2HML A;  3L71 E;  4HM1 A;  2JO6 A;  3D89 A;  3CX5 E;  1JM1 A;  2NVG A;  2QJY C;  3H1L E;  3VMI A;  1Q90 C;  3GKQ A;  2E75 D;  4QDC A;  2YFI A;  1Z02 A;  2ZYL A;  4OGQ D;  3GB4 A;  1NYK A;  1P84 E;  4AAY B;  3GKE A;  3VMG D;  4NBB D;  3C0D A;  3GTE A;  5AEU A;  1VCK A;  3FOU A;  4NBG D;  2HMK A;  2XSH A;  3CXH E;  4HM4 A;  4QDD A;  4EMJ B;  3GCE A;  5AEW A;  2XRX A;  2YFL A;  1VM9 A;  1KB9 E;  4U3F E;  1FQT A;  1ZRT E;  1O7W A;  2HMO A;  3H1K E;  3L74 E;  4HM8 A;  3EN1 A;  4NBA A;  2YIU C;  4HM2 A;  1SQP E;  3AZC A;  1SQB E;  3DQY A;  4QUQ A;  4NB8 D;  2NUM A;  1O7H A;  4HJL A;  1RIE A;  3GCF A;  1O7N A;  3GZX A;  3GL0 A;  3N0Q A;  3L70 E;  1L0N E;  2E4Q A;  4NBF D;  4NBC D;  4NBD D;  2HMM A;  1EZV E;  1RFS A;  1PP9 E;  2JZA A;  1G8J B;  1SQV E;  1O7M A;  3VMG A;  2YFJ A;  4NBB A;  5HL4 A;  2E74 D;  4QDF A;  1NTK E;  3VMH D; 
#chains in the Genus database with same CATH topology
 4NB9 D;  1WQL A;  2B1X A;  4NBE D;  2E76 D;  5CXM A;  4NBG A;  3L73 E;  3EQQ A;  4NBH D;  1Z03 A;  2D2C D;  2NWF A;  4QCK A;  4QUR A;  3GOB A;  3L72 E;  1VF5 D;  4QUP A;  2I7F A;  4HM7 A;  5KKZ C;  4HM6 A;  4AIV A;  2DE7 D;  3TGU E;  2DE5 D;  1O7G A;  4HKV A;  4QDF B;  2DE6 D;  2HMN A;  2HMJ A;  1BCC E;  2QPZ A;  4NB8 A;  1WW9 A;  2XR8 A;  4P1B H;  1UUV A;  3L75 E;  4NBF A;  4NBC A;  4NBD A;  3BCC E;  1NTZ E;  1NDO A;  1ULI A;  4HM3 A;  3VCP A;  3VMI D;  5BOK A;  1SQQ E;  2Q3W A;  4PV1 D;  3H1J E;  3VMH A;  1NTM E;  4NB9 A;  1BE3 E;  4NBE A;  2FYN C;  2GBX A;  3H1H E;  3GZY A;  4NBH A;  1L0L E;  2CKF A;  2B24 A;  4HM5 A;  2IBZ E;  2A06 E;  2BMR A;  3H1I E;  2BMO A;  5KLI C;  2ZT9 D;  2FYU E;  3GTS A;  1Z01 A;  2NVF A;  2XSO A;  1ULJ A;  2BCC E;  1NU1 E;  2E4P A;  2NUK A;  2DE7 A;  2BMQ A;  2DE5 A;  1KYO E;  1UUW A;  2QJP C;  4PD4 E;  2DE6 A;  1EG9 A;  2GBW A;  1SQX E;  3VCA A;  4H13 D;  4H0L D;  1SJG A;  4P1C H;  3CWB E;  2YVJ B;  1O7P A;  4H44 D;  5KLV E;  2NVE A;  3GL2 A;  2QJK C;  4NBA D;  1G8K B;  1PPJ E;  4HM0 A;  2HML A;  3L71 E;  4HM1 A;  2JO6 A;  3D89 A;  3CX5 E;  1JM1 A;  2NVG A;  2QJY C;  3H1L E;  3VMI A;  1Q90 C;  3GKQ A;  2E75 D;  4QDC A;  2YFI A;  1Z02 A;  2ZYL A;  4OGQ D;  3GB4 A;  1NYK A;  1P84 E;  4AAY B;  3GKE A;  3VMG D;  4NBB D;  3C0D A;  3GTE A;  5AEU A;  1VCK A;  3FOU A;  4NBG D;  2HMK A;  2XSH A;  3CXH E;  4HM4 A;  4QDD A;  4EMJ B;  3GCE A;  5AEW A;  2XRX A;  2YFL A;  1VM9 A;  1KB9 E;  4U3F E;  1FQT A;  1ZRT E;  1O7W A;  2HMO A;  3H1K E;  3L74 E;  4HM8 A;  3EN1 A;  4NBA A;  2YIU C;  4HM2 A;  1SQP E;  3AZC A;  1SQB E;  3DQY A;  4QUQ A;  4NB8 D;  2NUM A;  1O7H A;  4HJL A;  1RIE A;  3GCF A;  1O7N A;  3GZX A;  3GL0 A;  3N0Q A;  3L70 E;  1L0N E;  2E4Q A;  4NBF D;  4NBC D;  4NBD D;  2HMM A;  1EZV E;  1RFS A;  1PP9 E;  2JZA A;  1G8J B;  1SQV E;  1O7M A;  3VMG A;  2YFJ A;  4NBB A;  5HL4 A;  2E74 D;  4QDF A;  1NTK E;  3VMH D; 
#chains in the Genus database with same CATH homology
 4NB9 D;  1WQL A;  2B1X A;  4NBE D;  2E76 D;  5CXM A;  4NBG A;  3L73 E;  3EQQ A;  4NBH D;  1Z03 A;  2D2C D;  2NWF A;  4QCK A;  4QUR A;  3GOB A;  3L72 E;  1VF5 D;  4QUP A;  2I7F A;  4HM7 A;  5KKZ C;  4HM6 A;  4AIV A;  2DE7 D;  3TGU E;  2DE5 D;  1O7G A;  4HKV A;  4QDF B;  2DE6 D;  2HMN A;  2HMJ A;  1BCC E;  2QPZ A;  4NB8 A;  1WW9 A;  2XR8 A;  4P1B H;  1UUV A;  3L75 E;  4NBF A;  4NBC A;  4NBD A;  3BCC E;  1NTZ E;  1NDO A;  1ULI A;  4HM3 A;  3VCP A;  3VMI D;  5BOK A;  1SQQ E;  2Q3W A;  4PV1 D;  3H1J E;  3VMH A;  1NTM E;  4NB9 A;  1BE3 E;  4NBE A;  2FYN C;  2GBX A;  3H1H E;  3GZY A;  4NBH A;  1L0L E;  2CKF A;  2B24 A;  4HM5 A;  2IBZ E;  2A06 E;  2BMR A;  3H1I E;  2BMO A;  5KLI C;  2ZT9 D;  2FYU E;  3GTS A;  1Z01 A;  2NVF A;  2XSO A;  1ULJ A;  2BCC E;  1NU1 E;  2E4P A;  2NUK A;  2DE7 A;  2BMQ A;  2DE5 A;  1KYO E;  1UUW A;  2QJP C;  4PD4 E;  2DE6 A;  1EG9 A;  2GBW A;  1SQX E;  3VCA A;  4H13 D;  4H0L D;  1SJG A;  4P1C H;  3CWB E;  2YVJ B;  1O7P A;  4H44 D;  5KLV E;  2NVE A;  3GL2 A;  2QJK C;  4NBA D;  1G8K B;  1PPJ E;  4HM0 A;  2HML A;  3L71 E;  4HM1 A;  2JO6 A;  3D89 A;  3CX5 E;  1JM1 A;  2NVG A;  2QJY C;  3H1L E;  3VMI A;  1Q90 C;  3GKQ A;  2E75 D;  4QDC A;  2YFI A;  1Z02 A;  2ZYL A;  4OGQ D;  3GB4 A;  1NYK A;  1P84 E;  4AAY B;  3GKE A;  3VMG D;  4NBB D;  3C0D A;  3GTE A;  5AEU A;  1VCK A;  3FOU A;  4NBG D;  2HMK A;  2XSH A;  3CXH E;  4HM4 A;  4QDD A;  4EMJ B;  3GCE A;  5AEW A;  2XRX A;  2YFL A;  1VM9 A;  1KB9 E;  4U3F E;  1FQT A;  1ZRT E;  1O7W A;  2HMO A;  3H1K E;  3L74 E;  4HM8 A;  3EN1 A;  4NBA A;  2YIU C;  4HM2 A;  1SQP E;  3AZC A;  1SQB E;  3DQY A;  4QUQ A;  4NB8 D;  2NUM A;  1O7H A;  4HJL A;  1RIE A;  3GCF A;  1O7N A;  3GZX A;  3GL0 A;  3N0Q A;  3L70 E;  1L0N E;  2E4Q A;  4NBF D;  4NBC D;  4NBD D;  2HMM A;  1EZV E;  1RFS A;  1PP9 E;  2JZA A;  1G8J B;  1SQV E;  1O7M A;  3VMG A;  2YFJ A;  4NBB A;  5HL4 A;  2E74 D;  4QDF A;  1NTK E;  3VMH D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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