2HMLA

Crystal structure of the naphthalene 1,2-dioxygenase f352v mutant bound to phenanthrene.
Total Genus 162
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
446
structure length
446
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTVGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
total genus 162
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmlA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmlA01
1RFSA 3VMGD 3L75E 2FYUE 3EQQA 2E74D 1PP9E 1SQBE 1BCCE 2NVEA 3GZYA 4NBBA 3VMID 2DE6D 3GL0A 1SQPE 4HM3A 2QJYC 4NBGD 1JM1A 1SQQE 3CXHE 1NTME 3GZXA 4H0LD 2NUKA 5KKZC 2GBXA 2JZAA 4HM5A 3H1IE 1WQLA 3GKQA 2DE5D 1SJGA 2DE7D 2HMNA 2JO6A 2CKFA 1NYKA 3L71E 3H1KE 4NBCD 3CWBE 4QURA 3GCFA 2BCCE 4NB9D 1ZRTE 2D2CD 5BOKA 2HMLA 2I7FA 1ULJA 3GCEA 4QUPA 1Z01A 2BMOA 4PV1D 2HMKA 2XRXA 2E4QA 4NBED 1VCKA 2NUMA 4NBFD 4NBHA 1G8JB 1NU1E 1Q90C 1P84E 4HM7A 2ZT9D 4NB8D 1G8KB 3C0DA 3H1LE 4QDFA 4HJLA 4HM2A 4NBAD 4OGQD 1SQVE 5AEWA 4AIVA 4NBDA 1ULIA 5CXMA 3FOUA 1KB9E 3TGUE 3BCCE 2E75D 2IBZE 2YFJA 3GKEA 3GOBA 3L74E 2B24A 2HMOA 2HMJA 4H44D 1BE3E 3VMGA 1O7GA 1NTKE 4QDCA 2FYNC 3VMHD 4HM0A 4HM4A 3VMIA 1O7HA 2DE6A 2DE5A 3EN1A 1UUVA 1L0LE 1Z02A 4NBGA 3N0QA 1O7PA 2B1XA 2QJPC 4HM8A 2YFLA 4QDFB 3CX5E 4NBBD 2XSHA 3GL2A 3D89A 5HL4A 2Q3WA 2QJKC 5KLIC 1VF5D 2DE7A 2E4PA 1O7WA 1O7MA 4NBCA 3H1JE 2QPZA 4NB9A 3VCAA 4QUQA 2HMMA 1O7NA 2XSOA 3AZCA 2YFIA 2XR8A 4NBEA 4NBFA 1UUWA 4HM1A 2NVGA 1NTZE 4NB8A 1EG9A 4P1BH 4EMJB 3GB4A 1L0NE 4NBAA 1KYOE 5KLVE 3DQYA 4HM6A 4PD4E 3VCPA 4NBHD 1Z03A 1WW9A 4H13D 2YVJB 2YIUC 2NWFA 3L73E 3GTEA 4U3FE 5AEUA 1VM9A 4HKVA 4P1CH 1PPJE 1SQXE 3H1HE 4AAYB 1FQTA 4QCKA 1NDOA 4NBDD 2ZYLA 4QDDA 1RIEA 3GTSA 2NVFA 3VMHA 2BMQA 2BMRA 1EZVE 2GBWA 2E76D 3L72E 3L70E 2A06E
chains in the Genus database with same CATH superfamily
1RFSA 3VMGD 3L75E 2FYUE 3EQQA 2E74D 1PP9E 1SQBE 1BCCE 2NVEA 3GZYA 4NBBA 3VMID 2DE6D 3GL0A 1SQPE 4HM3A 2QJYC 4NBGD 1JM1A 1SQQE 3CXHE 1NTME 3GZXA 4H0LD 2NUKA 5KKZC 2GBXA 2JZAA 4HM5A 3H1IE 1WQLA 3GKQA 2DE5D 1SJGA 2DE7D 2HMNA 2JO6A 2CKFA 1NYKA 3L71E 3H1KE 4NBCD 3CWBE 4QURA 3GCFA 2BCCE 4NB9D 1ZRTE 2D2CD 5BOKA 2HMLA 2I7FA 1ULJA 3GCEA 4QUPA 1Z01A 2BMOA 4PV1D 2HMKA 2XRXA 2E4QA 4NBED 1VCKA 2NUMA 4NBFD 4NBHA 1G8JB 1NU1E 1Q90C 1P84E 4HM7A 2ZT9D 4NB8D 1G8KB 3C0DA 3H1LE 4QDFA 4HJLA 4HM2A 4NBAD 4OGQD 1SQVE 5AEWA 4AIVA 4NBDA 1ULIA 5CXMA 3FOUA 1KB9E 3TGUE 3BCCE 2E75D 2IBZE 2YFJA 3GKEA 3GOBA 3L74E 2B24A 2HMOA 2HMJA 4H44D 1BE3E 3VMGA 1O7GA 1NTKE 4QDCA 2FYNC 3VMHD 4HM0A 4HM4A 3VMIA 1O7HA 2DE6A 2DE5A 3EN1A 1UUVA 1L0LE 1Z02A 4NBGA 3N0QA 1O7PA 2B1XA 2QJPC 4HM8A 2YFLA 4QDFB 3CX5E 4NBBD 2XSHA 3GL2A 3D89A 5HL4A 2Q3WA 2QJKC 5KLIC 1VF5D 2DE7A 2E4PA 1O7WA 1O7MA 4NBCA 3H1JE 2QPZA 4NB9A 3VCAA 4QUQA 2HMMA 1O7NA 2XSOA 3AZCA 2YFIA 2XR8A 4NBEA 4NBFA 1UUWA 4HM1A 2NVGA 1NTZE 4NB8A 1EG9A 4P1BH 4EMJB 3GB4A 1L0NE 4NBAA 1KYOE 5KLVE 3DQYA 4HM6A 4PD4E 3VCPA 4NBHD 1Z03A 1WW9A 4H13D 2YVJB 2YIUC 2NWFA 3L73E 3GTEA 4U3FE 5AEUA 1VM9A 4HKVA 4P1CH 1PPJE 1SQXE 3H1HE 4AAYB 1FQTA 4QCKA 1NDOA 4NBDD 2ZYLA 4QDDA 1RIEA 3GTSA 2NVFA 3VMHA 2BMQA 2BMRA 1EZVE 2GBWA 2E76D 3L72E 3L70E 2A06E
chains in the Genus database with same CATH topology
1RFSA 3VMGD 3L75E 2FYUE 3EQQA 2E74D 1PP9E 1SQBE 1BCCE 2NVEA 3GZYA 4NBBA 3VMID 2DE6D 3GL0A 1SQPE 4HM3A 2QJYC 4NBGD 1JM1A 1SQQE 3CXHE 1NTME 3GZXA 4H0LD 2NUKA 5KKZC 2GBXA 2JZAA 4HM5A 3H1IE 1WQLA 3GKQA 2DE5D 1SJGA 2DE7D 2HMNA 2JO6A 2CKFA 1NYKA 3L71E 3H1KE 4NBCD 3CWBE 4QURA 3GCFA 2BCCE 4NB9D 1ZRTE 2D2CD 5BOKA 2HMLA 2I7FA 1ULJA 3GCEA 4QUPA 1Z01A 2BMOA 4PV1D 2HMKA 2XRXA 2E4QA 4NBED 1VCKA 2NUMA 4NBFD 4NBHA 1G8JB 1NU1E 1Q90C 1P84E 4HM7A 2ZT9D 4NB8D 1G8KB 3C0DA 3H1LE 4QDFA 4HJLA 4HM2A 4NBAD 4OGQD 1SQVE 5AEWA 4AIVA 4NBDA 1ULIA 5CXMA 3FOUA 1KB9E 3TGUE 3BCCE 2E75D 2IBZE 2YFJA 3GKEA 3GOBA 3L74E 2B24A 2HMOA 2HMJA 4H44D 1BE3E 3VMGA 1O7GA 1NTKE 4QDCA 2FYNC 3VMHD 4HM0A 4HM4A 3VMIA 1O7HA 2DE6A 2DE5A 3EN1A 1UUVA 1L0LE 1Z02A 4NBGA 3N0QA 1O7PA 2B1XA 2QJPC 4HM8A 2YFLA 4QDFB 3CX5E 4NBBD 2XSHA 3GL2A 3D89A 5HL4A 2Q3WA 2QJKC 5KLIC 1VF5D 2DE7A 2E4PA 1O7WA 1O7MA 4NBCA 3H1JE 2QPZA 4NB9A 3VCAA 4QUQA 2HMMA 1O7NA 2XSOA 3AZCA 2YFIA 2XR8A 4NBEA 4NBFA 1UUWA 4HM1A 2NVGA 1NTZE 4NB8A 1EG9A 4P1BH 4EMJB 3GB4A 1L0NE 4NBAA 1KYOE 5KLVE 3DQYA 4HM6A 4PD4E 3VCPA 4NBHD 1Z03A 1WW9A 4H13D 2YVJB 2YIUC 2NWFA 3L73E 3GTEA 4U3FE 5AEUA 1VM9A 4HKVA 4P1CH 1PPJE 1SQXE 3H1HE 4AAYB 1FQTA 4QCKA 1NDOA 4NBDD 2ZYLA 4QDDA 1RIEA 3GTSA 2NVFA 3VMHA 2BMQA 2BMRA 1EZVE 2GBWA 2E76D 3L72E 3L70E 2A06E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RFS A;  3VMG D;  3L75 E;  2FYU E;  3EQQ A;  2E74 D;  1PP9 E;  1SQB E;  1BCC E;  2NVE A;  3GZY A;  4NBB A;  3VMI D;  2DE6 D;  3GL0 A;  1SQP E;  4HM3 A;  2QJY C;  4NBG D;  1JM1 A;  1SQQ E;  3CXH E;  1NTM E;  3GZX A;  4H0L D;  2NUK A;  5KKZ C;  2GBX A;  2JZA A;  4HM5 A;  3H1I E;  1WQL A;  3GKQ A;  2DE5 D;  1SJG A;  2DE7 D;  2HMN A;  2JO6 A;  2CKF A;  1NYK A;  3L71 E;  3H1K E;  4NBC D;  3CWB E;  4QUR A;  3GCF A;  2BCC E;  4NB9 D;  1ZRT E;  2D2C D;  5BOK A;  2HML A;  2I7F A;  1ULJ A;  3GCE A;  4QUP A;  1Z01 A;  2BMO A;  4PV1 D;  2HMK A;  2XRX A;  2E4Q A;  4NBE D;  1VCK A;  2NUM A;  4NBF D;  4NBH A;  1G8J B;  1NU1 E;  1Q90 C;  1P84 E;  4HM7 A;  2ZT9 D;  4NB8 D;  1G8K B;  3C0D A;  3H1L E;  4QDF A;  4HJL A;  4HM2 A;  4NBA D;  4OGQ D;  1SQV E;  5AEW A;  4AIV A;  4NBD A;  1ULI A;  5CXM A;  3FOU A;  1KB9 E;  3TGU E;  3BCC E;  2E75 D;  2IBZ E;  2YFJ A;  3GKE A;  3GOB A;  3L74 E;  2B24 A;  2HMO A;  2HMJ A;  4H44 D;  1BE3 E;  3VMG A;  1O7G A;  1NTK E;  4QDC A;  2FYN C;  3VMH D;  4HM0 A;  4HM4 A;  3VMI A;  1O7H A;  2DE6 A;  2DE5 A;  3EN1 A;  1UUV A;  1L0L E;  1Z02 A;  4NBG A;  3N0Q A;  1O7P A;  2B1X A;  2QJP C;  4HM8 A;  2YFL A;  4QDF B;  3CX5 E;  4NBB D;  2XSH A;  3GL2 A;  3D89 A;  5HL4 A;  2Q3W A;  2QJK C;  5KLI C;  1VF5 D;  2DE7 A;  2E4P A;  1O7W A;  1O7M A;  4NBC A;  3H1J E;  2QPZ A;  4NB9 A;  3VCA A;  4QUQ A;  2HMM A;  1O7N A;  2XSO A;  3AZC A;  2YFI A;  2XR8 A;  4NBE A;  4NBF A;  1UUW A;  4HM1 A;  2NVG A;  1NTZ E;  4NB8 A;  1EG9 A;  4P1B H;  4EMJ B;  3GB4 A;  1L0N E;  4NBA A;  1KYO E;  5KLV E;  3DQY A;  4HM6 A;  4PD4 E;  3VCP A;  4NBH D;  1Z03 A;  1WW9 A;  4H13 D;  2YVJ B;  2YIU C;  2NWF A;  3L73 E;  3GTE A;  4U3F E;  5AEU A;  1VM9 A;  4HKV A;  4P1C H;  1PPJ E;  1SQX E;  3H1H E;  4AAY B;  1FQT A;  4QCK A;  1NDO A;  4NBD D;  2ZYL A;  4QDD A;  1RIE A;  3GTS A;  2NVF A;  3VMH A;  2BMQ A;  2BMR A;  1EZV E;  2GBW A;  2E76 D;  3L72 E;  3L70 E;  2A06 E; 
#chains in the Genus database with same CATH topology
 1RFS A;  3VMG D;  3L75 E;  2FYU E;  3EQQ A;  2E74 D;  1PP9 E;  1SQB E;  1BCC E;  2NVE A;  3GZY A;  4NBB A;  3VMI D;  2DE6 D;  3GL0 A;  1SQP E;  4HM3 A;  2QJY C;  4NBG D;  1JM1 A;  1SQQ E;  3CXH E;  1NTM E;  3GZX A;  4H0L D;  2NUK A;  5KKZ C;  2GBX A;  2JZA A;  4HM5 A;  3H1I E;  1WQL A;  3GKQ A;  2DE5 D;  1SJG A;  2DE7 D;  2HMN A;  2JO6 A;  2CKF A;  1NYK A;  3L71 E;  3H1K E;  4NBC D;  3CWB E;  4QUR A;  3GCF A;  2BCC E;  4NB9 D;  1ZRT E;  2D2C D;  5BOK A;  2HML A;  2I7F A;  1ULJ A;  3GCE A;  4QUP A;  1Z01 A;  2BMO A;  4PV1 D;  2HMK A;  2XRX A;  2E4Q A;  4NBE D;  1VCK A;  2NUM A;  4NBF D;  4NBH A;  1G8J B;  1NU1 E;  1Q90 C;  1P84 E;  4HM7 A;  2ZT9 D;  4NB8 D;  1G8K B;  3C0D A;  3H1L E;  4QDF A;  4HJL A;  4HM2 A;  4NBA D;  4OGQ D;  1SQV E;  5AEW A;  4AIV A;  4NBD A;  1ULI A;  5CXM A;  3FOU A;  1KB9 E;  3TGU E;  3BCC E;  2E75 D;  2IBZ E;  2YFJ A;  3GKE A;  3GOB A;  3L74 E;  2B24 A;  2HMO A;  2HMJ A;  4H44 D;  1BE3 E;  3VMG A;  1O7G A;  1NTK E;  4QDC A;  2FYN C;  3VMH D;  4HM0 A;  4HM4 A;  3VMI A;  1O7H A;  2DE6 A;  2DE5 A;  3EN1 A;  1UUV A;  1L0L E;  1Z02 A;  4NBG A;  3N0Q A;  1O7P A;  2B1X A;  2QJP C;  4HM8 A;  2YFL A;  4QDF B;  3CX5 E;  4NBB D;  2XSH A;  3GL2 A;  3D89 A;  5HL4 A;  2Q3W A;  2QJK C;  5KLI C;  1VF5 D;  2DE7 A;  2E4P A;  1O7W A;  1O7M A;  4NBC A;  3H1J E;  2QPZ A;  4NB9 A;  3VCA A;  4QUQ A;  2HMM A;  1O7N A;  2XSO A;  3AZC A;  2YFI A;  2XR8 A;  4NBE A;  4NBF A;  1UUW A;  4HM1 A;  2NVG A;  1NTZ E;  4NB8 A;  1EG9 A;  4P1B H;  4EMJ B;  3GB4 A;  1L0N E;  4NBA A;  1KYO E;  5KLV E;  3DQY A;  4HM6 A;  4PD4 E;  3VCP A;  4NBH D;  1Z03 A;  1WW9 A;  4H13 D;  2YVJ B;  2YIU C;  2NWF A;  3L73 E;  3GTE A;  4U3F E;  5AEU A;  1VM9 A;  4HKV A;  4P1C H;  1PPJ E;  1SQX E;  3H1H E;  4AAY B;  1FQT A;  4QCK A;  1NDO A;  4NBD D;  2ZYL A;  4QDD A;  1RIE A;  3GTS A;  2NVF A;  3VMH A;  2BMQ A;  2BMR A;  1EZV E;  2GBW A;  2E76 D;  3L72 E;  3L70 E;  2A06 E; 
#chains in the Genus database with same CATH homology
 1RFS A;  3VMG D;  3L75 E;  2FYU E;  3EQQ A;  2E74 D;  1PP9 E;  1SQB E;  1BCC E;  2NVE A;  3GZY A;  4NBB A;  3VMI D;  2DE6 D;  3GL0 A;  1SQP E;  4HM3 A;  2QJY C;  4NBG D;  1JM1 A;  1SQQ E;  3CXH E;  1NTM E;  3GZX A;  4H0L D;  2NUK A;  5KKZ C;  2GBX A;  2JZA A;  4HM5 A;  3H1I E;  1WQL A;  3GKQ A;  2DE5 D;  1SJG A;  2DE7 D;  2HMN A;  2JO6 A;  2CKF A;  1NYK A;  3L71 E;  3H1K E;  4NBC D;  3CWB E;  4QUR A;  3GCF A;  2BCC E;  4NB9 D;  1ZRT E;  2D2C D;  5BOK A;  2HML A;  2I7F A;  1ULJ A;  3GCE A;  4QUP A;  1Z01 A;  2BMO A;  4PV1 D;  2HMK A;  2XRX A;  2E4Q A;  4NBE D;  1VCK A;  2NUM A;  4NBF D;  4NBH A;  1G8J B;  1NU1 E;  1Q90 C;  1P84 E;  4HM7 A;  2ZT9 D;  4NB8 D;  1G8K B;  3C0D A;  3H1L E;  4QDF A;  4HJL A;  4HM2 A;  4NBA D;  4OGQ D;  1SQV E;  5AEW A;  4AIV A;  4NBD A;  1ULI A;  5CXM A;  3FOU A;  1KB9 E;  3TGU E;  3BCC E;  2E75 D;  2IBZ E;  2YFJ A;  3GKE A;  3GOB A;  3L74 E;  2B24 A;  2HMO A;  2HMJ A;  4H44 D;  1BE3 E;  3VMG A;  1O7G A;  1NTK E;  4QDC A;  2FYN C;  3VMH D;  4HM0 A;  4HM4 A;  3VMI A;  1O7H A;  2DE6 A;  2DE5 A;  3EN1 A;  1UUV A;  1L0L E;  1Z02 A;  4NBG A;  3N0Q A;  1O7P A;  2B1X A;  2QJP C;  4HM8 A;  2YFL A;  4QDF B;  3CX5 E;  4NBB D;  2XSH A;  3GL2 A;  3D89 A;  5HL4 A;  2Q3W A;  2QJK C;  5KLI C;  1VF5 D;  2DE7 A;  2E4P A;  1O7W A;  1O7M A;  4NBC A;  3H1J E;  2QPZ A;  4NB9 A;  3VCA A;  4QUQ A;  2HMM A;  1O7N A;  2XSO A;  3AZC A;  2YFI A;  2XR8 A;  4NBE A;  4NBF A;  1UUW A;  4HM1 A;  2NVG A;  1NTZ E;  4NB8 A;  1EG9 A;  4P1B H;  4EMJ B;  3GB4 A;  1L0N E;  4NBA A;  1KYO E;  5KLV E;  3DQY A;  4HM6 A;  4PD4 E;  3VCP A;  4NBH D;  1Z03 A;  1WW9 A;  4H13 D;  2YVJ B;  2YIU C;  2NWF A;  3L73 E;  3GTE A;  4U3F E;  5AEU A;  1VM9 A;  4HKV A;  4P1C H;  1PPJ E;  1SQX E;  3H1H E;  4AAY B;  1FQT A;  4QCK A;  1NDO A;  4NBD D;  2ZYL A;  4QDD A;  1RIE A;  3GTS A;  2NVF A;  3VMH A;  2BMQ A;  2BMR A;  1EZV E;  2GBW A;  2E76 D;  3L72 E;  3L70 E;  2A06 E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...