2HMLA

Crystal structure of the naphthalene 1,2-dioxygenase f352v mutant bound to phenanthrene.
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTVGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
total genus 162
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmlA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmlA01
4QUPA 4QDDA 2DE6D 3GTEA 1ULJA 4NBDD 4QURA 1UUVA 2E4PA 4HM7A 1VM9A 2BMOA 1L0LE 2ZYLA 2HMKA 3VCPA 3TGUE 1WW9A 1SQPE 1Q90C 3CXHE 5KLVE 1RFSA 1VF5D 3H1KE 3L72E 3H1JE 1O7HA 3DQYA 3GCEA 4P1BH 2HMLA 2HMOA 2HMNA 2B24A 2GBWA 2NVEA 4HM5A 1NDOA 4NBGA 2YFJA 3GB4A 3H1HE 3GKQA 3L73E 2ZT9D 1BE3E 4HM3A 2JZAA 2XSOA 4HM2A 4EMJB 2B1XA 4HJLA 3AZCA 3VMHD 1SQBE 3FOUA 3CX5E 2DE7A 2XRXA 2NVGA 2E4QA 2NVFA 2DE6A 2E76D 1JM1A 2FYUE 2NUKA 3GCFA 1O7NA 3VMID 3GL0A 4NBFD 2A06E 3VMGD 1EG9A 1G8KB 1NTME 2XR8A 1ZRTE 2YFIA 4H0LD 4QDCA 1SJGA 4NB9A 2CKFA 2BMQA 2QPZA 2D2CD 3GKEA 3L70E 1P84E 4QCKA 2YFLA 4NBHD 4NBCD 1BCCE 1SQQE 2QJYC 2E75D 2DE5A 3VCAA 2BCCE 1NTZE 4HM0A 3GZXA 4NBAD 1VCKA 4NBEA 4NBBD 2HMMA 3GOBA 4H13D 4OGQD 4QUQA 4HM1A 4HM4A 2FYNC 4HM6A 1O7WA 4NBDA 1SQVE 4AAYB 3L74E 4HM8A 1UUWA 1KB9E 3L71E 4U3FE 1FQTA 1G8JB 2E74D 4NBGD 4NB8D 5HL4A 3EN1A 1O7MA 4AIVA 5CXMA 2JO6A 3BCCE 2YIUC 4P1CH 3D89A 1KYOE 3GTSA 1O7GA 4NBCA 2IBZE 2NWFA 5KLIC 1Z03A 2DE7D 3H1LE 2QJKC 3N0QA 3H1IE 4NBAA 1NU1E 2Q3WA 1O7PA 4HKVA 4NBBA 1PP9E 3VMHA 5AEWA 1Z02A 2YVJB 3GZYA 1NTKE 3CWBE 2NUMA 1SQXE 4H44D 4NB9D 1PPJE 3C0DA 3EQQA 3VMIA 2HMJA 4PV1D 4NBFA 4PD4E 5BOKA 3VMGA 1WQLA 2XSHA 5KKZC 1NYKA 2I7FA 2DE5D 4NB8A 3L75E 4QDFA 3GL2A 4QDFB 2QJPC 2BMRA 5AEUA 1ULIA 4NBED 1EZVE 1RIEA 4NBHA 2GBXA 1Z01A 1L0NE
chains in the Genus database with same CATH superfamily
4QUPA 4QDDA 2DE6D 3GTEA 1ULJA 4NBDD 4QURA 1UUVA 2E4PA 4HM7A 1VM9A 2BMOA 1L0LE 2ZYLA 2HMKA 3VCPA 3TGUE 1WW9A 1SQPE 1Q90C 3CXHE 5KLVE 1RFSA 1VF5D 3H1KE 3L72E 3H1JE 1O7HA 3DQYA 3GCEA 4P1BH 2HMLA 2HMOA 2HMNA 2B24A 2GBWA 2NVEA 4HM5A 1NDOA 4NBGA 2YFJA 3GB4A 3H1HE 3GKQA 3L73E 2ZT9D 1BE3E 4HM3A 2JZAA 2XSOA 4HM2A 4EMJB 2B1XA 4HJLA 3AZCA 3VMHD 1SQBE 3FOUA 3CX5E 2DE7A 2XRXA 2NVGA 2E4QA 2NVFA 2DE6A 2E76D 1JM1A 2FYUE 2NUKA 3GCFA 1O7NA 3VMID 3GL0A 4NBFD 2A06E 3VMGD 1EG9A 1G8KB 1NTME 2XR8A 1ZRTE 2YFIA 4H0LD 4QDCA 1SJGA 4NB9A 2CKFA 2BMQA 2QPZA 2D2CD 3GKEA 3L70E 1P84E 4QCKA 2YFLA 4NBHD 4NBCD 1BCCE 1SQQE 2QJYC 2E75D 2DE5A 3VCAA 2BCCE 1NTZE 4HM0A 3GZXA 4NBAD 1VCKA 4NBEA 4NBBD 2HMMA 3GOBA 4H13D 4OGQD 4QUQA 4HM1A 4HM4A 2FYNC 4HM6A 1O7WA 4NBDA 1SQVE 4AAYB 3L74E 4HM8A 1UUWA 1KB9E 3L71E 4U3FE 1FQTA 1G8JB 2E74D 4NBGD 4NB8D 5HL4A 3EN1A 1O7MA 4AIVA 5CXMA 2JO6A 3BCCE 2YIUC 4P1CH 3D89A 1KYOE 3GTSA 1O7GA 4NBCA 2IBZE 2NWFA 5KLIC 1Z03A 2DE7D 3H1LE 2QJKC 3N0QA 3H1IE 4NBAA 1NU1E 2Q3WA 1O7PA 4HKVA 4NBBA 1PP9E 3VMHA 5AEWA 1Z02A 2YVJB 3GZYA 1NTKE 3CWBE 2NUMA 1SQXE 4H44D 4NB9D 1PPJE 3C0DA 3EQQA 3VMIA 2HMJA 4PV1D 4NBFA 4PD4E 5BOKA 3VMGA 1WQLA 2XSHA 5KKZC 1NYKA 2I7FA 2DE5D 4NB8A 3L75E 4QDFA 3GL2A 4QDFB 2QJPC 2BMRA 5AEUA 1ULIA 4NBED 1EZVE 1RIEA 4NBHA 2GBXA 1Z01A 1L0NE
chains in the Genus database with same CATH topology
4QUPA 4QDDA 2DE6D 3GTEA 1ULJA 4NBDD 4QURA 1UUVA 2E4PA 4HM7A 1VM9A 2BMOA 1L0LE 2ZYLA 2HMKA 3VCPA 3TGUE 1WW9A 1SQPE 1Q90C 3CXHE 5KLVE 1RFSA 1VF5D 3H1KE 3L72E 3H1JE 1O7HA 3DQYA 3GCEA 4P1BH 2HMLA 2HMOA 2HMNA 2B24A 2GBWA 2NVEA 4HM5A 1NDOA 4NBGA 2YFJA 3GB4A 3H1HE 3GKQA 3L73E 2ZT9D 1BE3E 4HM3A 2JZAA 2XSOA 4HM2A 4EMJB 2B1XA 4HJLA 3AZCA 3VMHD 1SQBE 3FOUA 3CX5E 2DE7A 2XRXA 2NVGA 2E4QA 2NVFA 2DE6A 2E76D 1JM1A 2FYUE 2NUKA 3GCFA 1O7NA 3VMID 3GL0A 4NBFD 2A06E 3VMGD 1EG9A 1G8KB 1NTME 2XR8A 1ZRTE 2YFIA 4H0LD 4QDCA 1SJGA 4NB9A 2CKFA 2BMQA 2QPZA 2D2CD 3GKEA 3L70E 1P84E 4QCKA 2YFLA 4NBHD 4NBCD 1BCCE 1SQQE 2QJYC 2E75D 2DE5A 3VCAA 2BCCE 1NTZE 4HM0A 3GZXA 4NBAD 1VCKA 4NBEA 4NBBD 2HMMA 3GOBA 4H13D 4OGQD 4QUQA 4HM1A 4HM4A 2FYNC 4HM6A 1O7WA 4NBDA 1SQVE 4AAYB 3L74E 4HM8A 1UUWA 1KB9E 3L71E 4U3FE 1FQTA 1G8JB 2E74D 4NBGD 4NB8D 5HL4A 3EN1A 1O7MA 4AIVA 5CXMA 2JO6A 3BCCE 2YIUC 4P1CH 3D89A 1KYOE 3GTSA 1O7GA 4NBCA 2IBZE 2NWFA 5KLIC 1Z03A 2DE7D 3H1LE 2QJKC 3N0QA 3H1IE 4NBAA 1NU1E 2Q3WA 1O7PA 4HKVA 4NBBA 1PP9E 3VMHA 5AEWA 1Z02A 2YVJB 3GZYA 1NTKE 3CWBE 2NUMA 1SQXE 4H44D 4NB9D 1PPJE 3C0DA 3EQQA 3VMIA 2HMJA 4PV1D 4NBFA 4PD4E 5BOKA 3VMGA 1WQLA 2XSHA 5KKZC 1NYKA 2I7FA 2DE5D 4NB8A 3L75E 4QDFA 3GL2A 4QDFB 2QJPC 2BMRA 5AEUA 1ULIA 4NBED 1EZVE 1RIEA 4NBHA 2GBXA 1Z01A 1L0NE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QUP A;  4QDD A;  2DE6 D;  3GTE A;  1ULJ A;  4NBD D;  4QUR A;  1UUV A;  2E4P A;  4HM7 A;  1VM9 A;  2BMO A;  1L0L E;  2ZYL A;  2HMK A;  3VCP A;  3TGU E;  1WW9 A;  1SQP E;  1Q90 C;  3CXH E;  5KLV E;  1RFS A;  1VF5 D;  3H1K E;  3L72 E;  3H1J E;  1O7H A;  3DQY A;  3GCE A;  4P1B H;  2HML A;  2HMO A;  2HMN A;  2B24 A;  2GBW A;  2NVE A;  4HM5 A;  1NDO A;  4NBG A;  2YFJ A;  3GB4 A;  3H1H E;  3GKQ A;  3L73 E;  2ZT9 D;  1BE3 E;  4HM3 A;  2JZA A;  2XSO A;  4HM2 A;  4EMJ B;  2B1X A;  4HJL A;  3AZC A;  3VMH D;  1SQB E;  3FOU A;  3CX5 E;  2DE7 A;  2XRX A;  2NVG A;  2E4Q A;  2NVF A;  2DE6 A;  2E76 D;  1JM1 A;  2FYU E;  2NUK A;  3GCF A;  1O7N A;  3VMI D;  3GL0 A;  4NBF D;  2A06 E;  3VMG D;  1EG9 A;  1G8K B;  1NTM E;  2XR8 A;  1ZRT E;  2YFI A;  4H0L D;  4QDC A;  1SJG A;  4NB9 A;  2CKF A;  2BMQ A;  2QPZ A;  2D2C D;  3GKE A;  3L70 E;  1P84 E;  4QCK A;  2YFL A;  4NBH D;  4NBC D;  1BCC E;  1SQQ E;  2QJY C;  2E75 D;  2DE5 A;  3VCA A;  2BCC E;  1NTZ E;  4HM0 A;  3GZX A;  4NBA D;  1VCK A;  4NBE A;  4NBB D;  2HMM A;  3GOB A;  4H13 D;  4OGQ D;  4QUQ A;  4HM1 A;  4HM4 A;  2FYN C;  4HM6 A;  1O7W A;  4NBD A;  1SQV E;  4AAY B;  3L74 E;  4HM8 A;  1UUW A;  1KB9 E;  3L71 E;  4U3F E;  1FQT A;  1G8J B;  2E74 D;  4NBG D;  4NB8 D;  5HL4 A;  3EN1 A;  1O7M A;  4AIV A;  5CXM A;  2JO6 A;  3BCC E;  2YIU C;  4P1C H;  3D89 A;  1KYO E;  3GTS A;  1O7G A;  4NBC A;  2IBZ E;  2NWF A;  5KLI C;  1Z03 A;  2DE7 D;  3H1L E;  2QJK C;  3N0Q A;  3H1I E;  4NBA A;  1NU1 E;  2Q3W A;  1O7P A;  4HKV A;  4NBB A;  1PP9 E;  3VMH A;  5AEW A;  1Z02 A;  2YVJ B;  3GZY A;  1NTK E;  3CWB E;  2NUM A;  1SQX E;  4H44 D;  4NB9 D;  1PPJ E;  3C0D A;  3EQQ A;  3VMI A;  2HMJ A;  4PV1 D;  4NBF A;  4PD4 E;  5BOK A;  3VMG A;  1WQL A;  2XSH A;  5KKZ C;  1NYK A;  2I7F A;  2DE5 D;  4NB8 A;  3L75 E;  4QDF A;  3GL2 A;  4QDF B;  2QJP C;  2BMR A;  5AEU A;  1ULI A;  4NBE D;  1EZV E;  1RIE A;  4NBH A;  2GBX A;  1Z01 A;  1L0N E; 
#chains in the Genus database with same CATH topology
 4QUP A;  4QDD A;  2DE6 D;  3GTE A;  1ULJ A;  4NBD D;  4QUR A;  1UUV A;  2E4P A;  4HM7 A;  1VM9 A;  2BMO A;  1L0L E;  2ZYL A;  2HMK A;  3VCP A;  3TGU E;  1WW9 A;  1SQP E;  1Q90 C;  3CXH E;  5KLV E;  1RFS A;  1VF5 D;  3H1K E;  3L72 E;  3H1J E;  1O7H A;  3DQY A;  3GCE A;  4P1B H;  2HML A;  2HMO A;  2HMN A;  2B24 A;  2GBW A;  2NVE A;  4HM5 A;  1NDO A;  4NBG A;  2YFJ A;  3GB4 A;  3H1H E;  3GKQ A;  3L73 E;  2ZT9 D;  1BE3 E;  4HM3 A;  2JZA A;  2XSO A;  4HM2 A;  4EMJ B;  2B1X A;  4HJL A;  3AZC A;  3VMH D;  1SQB E;  3FOU A;  3CX5 E;  2DE7 A;  2XRX A;  2NVG A;  2E4Q A;  2NVF A;  2DE6 A;  2E76 D;  1JM1 A;  2FYU E;  2NUK A;  3GCF A;  1O7N A;  3VMI D;  3GL0 A;  4NBF D;  2A06 E;  3VMG D;  1EG9 A;  1G8K B;  1NTM E;  2XR8 A;  1ZRT E;  2YFI A;  4H0L D;  4QDC A;  1SJG A;  4NB9 A;  2CKF A;  2BMQ A;  2QPZ A;  2D2C D;  3GKE A;  3L70 E;  1P84 E;  4QCK A;  2YFL A;  4NBH D;  4NBC D;  1BCC E;  1SQQ E;  2QJY C;  2E75 D;  2DE5 A;  3VCA A;  2BCC E;  1NTZ E;  4HM0 A;  3GZX A;  4NBA D;  1VCK A;  4NBE A;  4NBB D;  2HMM A;  3GOB A;  4H13 D;  4OGQ D;  4QUQ A;  4HM1 A;  4HM4 A;  2FYN C;  4HM6 A;  1O7W A;  4NBD A;  1SQV E;  4AAY B;  3L74 E;  4HM8 A;  1UUW A;  1KB9 E;  3L71 E;  4U3F E;  1FQT A;  1G8J B;  2E74 D;  4NBG D;  4NB8 D;  5HL4 A;  3EN1 A;  1O7M A;  4AIV A;  5CXM A;  2JO6 A;  3BCC E;  2YIU C;  4P1C H;  3D89 A;  1KYO E;  3GTS A;  1O7G A;  4NBC A;  2IBZ E;  2NWF A;  5KLI C;  1Z03 A;  2DE7 D;  3H1L E;  2QJK C;  3N0Q A;  3H1I E;  4NBA A;  1NU1 E;  2Q3W A;  1O7P A;  4HKV A;  4NBB A;  1PP9 E;  3VMH A;  5AEW A;  1Z02 A;  2YVJ B;  3GZY A;  1NTK E;  3CWB E;  2NUM A;  1SQX E;  4H44 D;  4NB9 D;  1PPJ E;  3C0D A;  3EQQ A;  3VMI A;  2HMJ A;  4PV1 D;  4NBF A;  4PD4 E;  5BOK A;  3VMG A;  1WQL A;  2XSH A;  5KKZ C;  1NYK A;  2I7F A;  2DE5 D;  4NB8 A;  3L75 E;  4QDF A;  3GL2 A;  4QDF B;  2QJP C;  2BMR A;  5AEU A;  1ULI A;  4NBE D;  1EZV E;  1RIE A;  4NBH A;  2GBX A;  1Z01 A;  1L0N E; 
#chains in the Genus database with same CATH homology
 4QUP A;  4QDD A;  2DE6 D;  3GTE A;  1ULJ A;  4NBD D;  4QUR A;  1UUV A;  2E4P A;  4HM7 A;  1VM9 A;  2BMO A;  1L0L E;  2ZYL A;  2HMK A;  3VCP A;  3TGU E;  1WW9 A;  1SQP E;  1Q90 C;  3CXH E;  5KLV E;  1RFS A;  1VF5 D;  3H1K E;  3L72 E;  3H1J E;  1O7H A;  3DQY A;  3GCE A;  4P1B H;  2HML A;  2HMO A;  2HMN A;  2B24 A;  2GBW A;  2NVE A;  4HM5 A;  1NDO A;  4NBG A;  2YFJ A;  3GB4 A;  3H1H E;  3GKQ A;  3L73 E;  2ZT9 D;  1BE3 E;  4HM3 A;  2JZA A;  2XSO A;  4HM2 A;  4EMJ B;  2B1X A;  4HJL A;  3AZC A;  3VMH D;  1SQB E;  3FOU A;  3CX5 E;  2DE7 A;  2XRX A;  2NVG A;  2E4Q A;  2NVF A;  2DE6 A;  2E76 D;  1JM1 A;  2FYU E;  2NUK A;  3GCF A;  1O7N A;  3VMI D;  3GL0 A;  4NBF D;  2A06 E;  3VMG D;  1EG9 A;  1G8K B;  1NTM E;  2XR8 A;  1ZRT E;  2YFI A;  4H0L D;  4QDC A;  1SJG A;  4NB9 A;  2CKF A;  2BMQ A;  2QPZ A;  2D2C D;  3GKE A;  3L70 E;  1P84 E;  4QCK A;  2YFL A;  4NBH D;  4NBC D;  1BCC E;  1SQQ E;  2QJY C;  2E75 D;  2DE5 A;  3VCA A;  2BCC E;  1NTZ E;  4HM0 A;  3GZX A;  4NBA D;  1VCK A;  4NBE A;  4NBB D;  2HMM A;  3GOB A;  4H13 D;  4OGQ D;  4QUQ A;  4HM1 A;  4HM4 A;  2FYN C;  4HM6 A;  1O7W A;  4NBD A;  1SQV E;  4AAY B;  3L74 E;  4HM8 A;  1UUW A;  1KB9 E;  3L71 E;  4U3F E;  1FQT A;  1G8J B;  2E74 D;  4NBG D;  4NB8 D;  5HL4 A;  3EN1 A;  1O7M A;  4AIV A;  5CXM A;  2JO6 A;  3BCC E;  2YIU C;  4P1C H;  3D89 A;  1KYO E;  3GTS A;  1O7G A;  4NBC A;  2IBZ E;  2NWF A;  5KLI C;  1Z03 A;  2DE7 D;  3H1L E;  2QJK C;  3N0Q A;  3H1I E;  4NBA A;  1NU1 E;  2Q3W A;  1O7P A;  4HKV A;  4NBB A;  1PP9 E;  3VMH A;  5AEW A;  1Z02 A;  2YVJ B;  3GZY A;  1NTK E;  3CWB E;  2NUM A;  1SQX E;  4H44 D;  4NB9 D;  1PPJ E;  3C0D A;  3EQQ A;  3VMI A;  2HMJ A;  4PV1 D;  4NBF A;  4PD4 E;  5BOK A;  3VMG A;  1WQL A;  2XSH A;  5KKZ C;  1NYK A;  2I7F A;  2DE5 D;  4NB8 A;  3L75 E;  4QDF A;  3GL2 A;  4QDF B;  2QJP C;  2BMR A;  5AEU A;  1ULI A;  4NBE D;  1EZV E;  1RIE A;  4NBH A;  2GBX A;  1Z01 A;  1L0N E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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