2HMMA

Crystal structure of naphthalene 1,2-dioxygenase bound to anthracene
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
446
structure length
446
Chain Sequence
b'MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
total genus 159
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmmA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmmA01
2E4QA 2NUKA 2A06E 3D89A 1RFSA 3L70E 2XSOA 3H1KE 2B1XA 3CX5E 1JM1A 3H1JE 3H1LE 4AIVA 5HL4A 1O7GA 3N0QA 4HKVA 2GBXA 2JZAA 1UUVA 5AEUA 3VMGD 4EMJB 3GZYA 4H13D 3VMGA 3H1HE 1NDOA 4PD4E 2JO6A 3BCCE 4H44D 5KLVE 4NBFD 3TGUE 1SQBE 1O7PA 2YFLA 2YFJA 2BMQA 1EZVE 3VMHD 4NBFA 3L75E 1RIEA 3L74E 4PV1D 3GTEA 3CXHE 3VCAA 5KKZC 4NBGA 4HM1A 1PPJE 2DE5D 4NBED 1BCCE 2NVEA 1NU1E 1Z01A 2ZT9D 3AZCA 3L72E 2DE5A 4NBBA 4NBEA 2Q3WA 1ZRTE 2HMJA 1SJGA 3EN1A 4HM7A 3GTSA 4OGQD 2IBZE 1VF5D 1O7MA 4HM4A 4HM8A 4P1CH 2DE7A 2I7FA 3GB4A 1Q90C 2HMNA 1SQXE 3EQQA 4NB8D 2XRXA 3FOUA 2NVGA 4NB8A 2YVJB 1KB9E 4HM5A 2NWFA 4QDFA 4NBGD 3L71E 1Z02A 3VMIA 2BMOA 3GKEA 1SQPE 2GBWA 2QJKC 4NBBD 2HMMA 3CWBE 5CXMA 4QDDA 1ULIA 2E4PA 4HM6A 3GKQA 1VM9A 1O7HA 2ZYLA 2BMRA 1Z03A 1VCKA 3DQYA 1NYKA 2HMLA 2NUMA 3C0DA 2B24A 2DE7D 3GL0A 1G8KB 2BCCE 1FQTA 4NBAA 1ULJA 4NBHA 4HM2A 1KYOE 4QUQA 1NTZE 1EG9A 1G8JB 2NVFA 2XSHA 3L73E 2XR8A 1WQLA 4QUPA 1O7WA 1SQQE 4NBCD 3VMID 2FYUE 1P84E 5AEWA 4NB9D 3VCPA 2HMKA 4NBCA 2D2CD 4NB9A 2YIUC 2FYNC 1L0NE 4HM0A 4AAYB 4QURA 3H1IE 1O7NA 4HJLA 4U3FE 5KLIC 3GCFA 4QCKA 1NTKE 2QPZA 4P1BH 4QDCA 4NBAD 4NBHD 3GCEA 4HM3A 3GZXA 4NBDD 4H0LD 2QJYC 1L0LE 1NTME 2CKFA 4QDFB 4NBDA 1BE3E 2E75D 2QJPC 3GOBA 5BOKA 1PP9E 2DE6D 1UUWA 3VMHA 2E76D 2HMOA 2YFIA 1SQVE 1WW9A 2E74D 2DE6A 3GL2A
chains in the Genus database with same CATH superfamily
2E4QA 2NUKA 2A06E 3D89A 1RFSA 3L70E 2XSOA 3H1KE 2B1XA 3CX5E 1JM1A 3H1JE 3H1LE 4AIVA 5HL4A 1O7GA 3N0QA 4HKVA 2GBXA 2JZAA 1UUVA 5AEUA 3VMGD 4EMJB 3GZYA 4H13D 3VMGA 3H1HE 1NDOA 4PD4E 2JO6A 3BCCE 4H44D 5KLVE 4NBFD 3TGUE 1SQBE 1O7PA 2YFLA 2YFJA 2BMQA 1EZVE 3VMHD 4NBFA 3L75E 1RIEA 3L74E 4PV1D 3GTEA 3CXHE 3VCAA 5KKZC 4NBGA 4HM1A 1PPJE 2DE5D 4NBED 1BCCE 2NVEA 1NU1E 1Z01A 2ZT9D 3AZCA 3L72E 2DE5A 4NBBA 4NBEA 2Q3WA 1ZRTE 2HMJA 1SJGA 3EN1A 4HM7A 3GTSA 4OGQD 2IBZE 1VF5D 1O7MA 4HM4A 4HM8A 4P1CH 2DE7A 2I7FA 3GB4A 1Q90C 2HMNA 1SQXE 3EQQA 4NB8D 2XRXA 3FOUA 2NVGA 4NB8A 2YVJB 1KB9E 4HM5A 2NWFA 4QDFA 4NBGD 3L71E 1Z02A 3VMIA 2BMOA 3GKEA 1SQPE 2GBWA 2QJKC 4NBBD 2HMMA 3CWBE 5CXMA 4QDDA 1ULIA 2E4PA 4HM6A 3GKQA 1VM9A 1O7HA 2ZYLA 2BMRA 1Z03A 1VCKA 3DQYA 1NYKA 2HMLA 2NUMA 3C0DA 2B24A 2DE7D 3GL0A 1G8KB 2BCCE 1FQTA 4NBAA 1ULJA 4NBHA 4HM2A 1KYOE 4QUQA 1NTZE 1EG9A 1G8JB 2NVFA 2XSHA 3L73E 2XR8A 1WQLA 4QUPA 1O7WA 1SQQE 4NBCD 3VMID 2FYUE 1P84E 5AEWA 4NB9D 3VCPA 2HMKA 4NBCA 2D2CD 4NB9A 2YIUC 2FYNC 1L0NE 4HM0A 4AAYB 4QURA 3H1IE 1O7NA 4HJLA 4U3FE 5KLIC 3GCFA 4QCKA 1NTKE 2QPZA 4P1BH 4QDCA 4NBAD 4NBHD 3GCEA 4HM3A 3GZXA 4NBDD 4H0LD 2QJYC 1L0LE 1NTME 2CKFA 4QDFB 4NBDA 1BE3E 2E75D 2QJPC 3GOBA 5BOKA 1PP9E 2DE6D 1UUWA 3VMHA 2E76D 2HMOA 2YFIA 1SQVE 1WW9A 2E74D 2DE6A 3GL2A
chains in the Genus database with same CATH topology
2E4QA 2NUKA 2A06E 3D89A 1RFSA 3L70E 2XSOA 3H1KE 2B1XA 3CX5E 1JM1A 3H1JE 3H1LE 4AIVA 5HL4A 1O7GA 3N0QA 4HKVA 2GBXA 2JZAA 1UUVA 5AEUA 3VMGD 4EMJB 3GZYA 4H13D 3VMGA 3H1HE 1NDOA 4PD4E 2JO6A 3BCCE 4H44D 5KLVE 4NBFD 3TGUE 1SQBE 1O7PA 2YFLA 2YFJA 2BMQA 1EZVE 3VMHD 4NBFA 3L75E 1RIEA 3L74E 4PV1D 3GTEA 3CXHE 3VCAA 5KKZC 4NBGA 4HM1A 1PPJE 2DE5D 4NBED 1BCCE 2NVEA 1NU1E 1Z01A 2ZT9D 3AZCA 3L72E 2DE5A 4NBBA 4NBEA 2Q3WA 1ZRTE 2HMJA 1SJGA 3EN1A 4HM7A 3GTSA 4OGQD 2IBZE 1VF5D 1O7MA 4HM4A 4HM8A 4P1CH 2DE7A 2I7FA 3GB4A 1Q90C 2HMNA 1SQXE 3EQQA 4NB8D 2XRXA 3FOUA 2NVGA 4NB8A 2YVJB 1KB9E 4HM5A 2NWFA 4QDFA 4NBGD 3L71E 1Z02A 3VMIA 2BMOA 3GKEA 1SQPE 2GBWA 2QJKC 4NBBD 2HMMA 3CWBE 5CXMA 4QDDA 1ULIA 2E4PA 4HM6A 3GKQA 1VM9A 1O7HA 2ZYLA 2BMRA 1Z03A 1VCKA 3DQYA 1NYKA 2HMLA 2NUMA 3C0DA 2B24A 2DE7D 3GL0A 1G8KB 2BCCE 1FQTA 4NBAA 1ULJA 4NBHA 4HM2A 1KYOE 4QUQA 1NTZE 1EG9A 1G8JB 2NVFA 2XSHA 3L73E 2XR8A 1WQLA 4QUPA 1O7WA 1SQQE 4NBCD 3VMID 2FYUE 1P84E 5AEWA 4NB9D 3VCPA 2HMKA 4NBCA 2D2CD 4NB9A 2YIUC 2FYNC 1L0NE 4HM0A 4AAYB 4QURA 3H1IE 1O7NA 4HJLA 4U3FE 5KLIC 3GCFA 4QCKA 1NTKE 2QPZA 4P1BH 4QDCA 4NBAD 4NBHD 3GCEA 4HM3A 3GZXA 4NBDD 4H0LD 2QJYC 1L0LE 1NTME 2CKFA 4QDFB 4NBDA 1BE3E 2E75D 2QJPC 3GOBA 5BOKA 1PP9E 2DE6D 1UUWA 3VMHA 2E76D 2HMOA 2YFIA 1SQVE 1WW9A 2E74D 2DE6A 3GL2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E4Q A;  2NUK A;  2A06 E;  3D89 A;  1RFS A;  3L70 E;  2XSO A;  3H1K E;  2B1X A;  3CX5 E;  1JM1 A;  3H1J E;  3H1L E;  4AIV A;  5HL4 A;  1O7G A;  3N0Q A;  4HKV A;  2GBX A;  2JZA A;  1UUV A;  5AEU A;  3VMG D;  4EMJ B;  3GZY A;  4H13 D;  3VMG A;  3H1H E;  1NDO A;  4PD4 E;  2JO6 A;  3BCC E;  4H44 D;  5KLV E;  4NBF D;  3TGU E;  1SQB E;  1O7P A;  2YFL A;  2YFJ A;  2BMQ A;  1EZV E;  3VMH D;  4NBF A;  3L75 E;  1RIE A;  3L74 E;  4PV1 D;  3GTE A;  3CXH E;  3VCA A;  5KKZ C;  4NBG A;  4HM1 A;  1PPJ E;  2DE5 D;  4NBE D;  1BCC E;  2NVE A;  1NU1 E;  1Z01 A;  2ZT9 D;  3AZC A;  3L72 E;  2DE5 A;  4NBB A;  4NBE A;  2Q3W A;  1ZRT E;  2HMJ A;  1SJG A;  3EN1 A;  4HM7 A;  3GTS A;  4OGQ D;  2IBZ E;  1VF5 D;  1O7M A;  4HM4 A;  4HM8 A;  4P1C H;  2DE7 A;  2I7F A;  3GB4 A;  1Q90 C;  2HMN A;  1SQX E;  3EQQ A;  4NB8 D;  2XRX A;  3FOU A;  2NVG A;  4NB8 A;  2YVJ B;  1KB9 E;  4HM5 A;  2NWF A;  4QDF A;  4NBG D;  3L71 E;  1Z02 A;  3VMI A;  2BMO A;  3GKE A;  1SQP E;  2GBW A;  2QJK C;  4NBB D;  2HMM A;  3CWB E;  5CXM A;  4QDD A;  1ULI A;  2E4P A;  4HM6 A;  3GKQ A;  1VM9 A;  1O7H A;  2ZYL A;  2BMR A;  1Z03 A;  1VCK A;  3DQY A;  1NYK A;  2HML A;  2NUM A;  3C0D A;  2B24 A;  2DE7 D;  3GL0 A;  1G8K B;  2BCC E;  1FQT A;  4NBA A;  1ULJ A;  4NBH A;  4HM2 A;  1KYO E;  4QUQ A;  1NTZ E;  1EG9 A;  1G8J B;  2NVF A;  2XSH A;  3L73 E;  2XR8 A;  1WQL A;  4QUP A;  1O7W A;  1SQQ E;  4NBC D;  3VMI D;  2FYU E;  1P84 E;  5AEW A;  4NB9 D;  3VCP A;  2HMK A;  4NBC A;  2D2C D;  4NB9 A;  2YIU C;  2FYN C;  1L0N E;  4HM0 A;  4AAY B;  4QUR A;  3H1I E;  1O7N A;  4HJL A;  4U3F E;  5KLI C;  3GCF A;  4QCK A;  1NTK E;  2QPZ A;  4P1B H;  4QDC A;  4NBA D;  4NBH D;  3GCE A;  4HM3 A;  3GZX A;  4NBD D;  4H0L D;  2QJY C;  1L0L E;  1NTM E;  2CKF A;  4QDF B;  4NBD A;  1BE3 E;  2E75 D;  2QJP C;  3GOB A;  5BOK A;  1PP9 E;  2DE6 D;  1UUW A;  3VMH A;  2E76 D;  2HMO A;  2YFI A;  1SQV E;  1WW9 A;  2E74 D;  2DE6 A;  3GL2 A; 
#chains in the Genus database with same CATH topology
 2E4Q A;  2NUK A;  2A06 E;  3D89 A;  1RFS A;  3L70 E;  2XSO A;  3H1K E;  2B1X A;  3CX5 E;  1JM1 A;  3H1J E;  3H1L E;  4AIV A;  5HL4 A;  1O7G A;  3N0Q A;  4HKV A;  2GBX A;  2JZA A;  1UUV A;  5AEU A;  3VMG D;  4EMJ B;  3GZY A;  4H13 D;  3VMG A;  3H1H E;  1NDO A;  4PD4 E;  2JO6 A;  3BCC E;  4H44 D;  5KLV E;  4NBF D;  3TGU E;  1SQB E;  1O7P A;  2YFL A;  2YFJ A;  2BMQ A;  1EZV E;  3VMH D;  4NBF A;  3L75 E;  1RIE A;  3L74 E;  4PV1 D;  3GTE A;  3CXH E;  3VCA A;  5KKZ C;  4NBG A;  4HM1 A;  1PPJ E;  2DE5 D;  4NBE D;  1BCC E;  2NVE A;  1NU1 E;  1Z01 A;  2ZT9 D;  3AZC A;  3L72 E;  2DE5 A;  4NBB A;  4NBE A;  2Q3W A;  1ZRT E;  2HMJ A;  1SJG A;  3EN1 A;  4HM7 A;  3GTS A;  4OGQ D;  2IBZ E;  1VF5 D;  1O7M A;  4HM4 A;  4HM8 A;  4P1C H;  2DE7 A;  2I7F A;  3GB4 A;  1Q90 C;  2HMN A;  1SQX E;  3EQQ A;  4NB8 D;  2XRX A;  3FOU A;  2NVG A;  4NB8 A;  2YVJ B;  1KB9 E;  4HM5 A;  2NWF A;  4QDF A;  4NBG D;  3L71 E;  1Z02 A;  3VMI A;  2BMO A;  3GKE A;  1SQP E;  2GBW A;  2QJK C;  4NBB D;  2HMM A;  3CWB E;  5CXM A;  4QDD A;  1ULI A;  2E4P A;  4HM6 A;  3GKQ A;  1VM9 A;  1O7H A;  2ZYL A;  2BMR A;  1Z03 A;  1VCK A;  3DQY A;  1NYK A;  2HML A;  2NUM A;  3C0D A;  2B24 A;  2DE7 D;  3GL0 A;  1G8K B;  2BCC E;  1FQT A;  4NBA A;  1ULJ A;  4NBH A;  4HM2 A;  1KYO E;  4QUQ A;  1NTZ E;  1EG9 A;  1G8J B;  2NVF A;  2XSH A;  3L73 E;  2XR8 A;  1WQL A;  4QUP A;  1O7W A;  1SQQ E;  4NBC D;  3VMI D;  2FYU E;  1P84 E;  5AEW A;  4NB9 D;  3VCP A;  2HMK A;  4NBC A;  2D2C D;  4NB9 A;  2YIU C;  2FYN C;  1L0N E;  4HM0 A;  4AAY B;  4QUR A;  3H1I E;  1O7N A;  4HJL A;  4U3F E;  5KLI C;  3GCF A;  4QCK A;  1NTK E;  2QPZ A;  4P1B H;  4QDC A;  4NBA D;  4NBH D;  3GCE A;  4HM3 A;  3GZX A;  4NBD D;  4H0L D;  2QJY C;  1L0L E;  1NTM E;  2CKF A;  4QDF B;  4NBD A;  1BE3 E;  2E75 D;  2QJP C;  3GOB A;  5BOK A;  1PP9 E;  2DE6 D;  1UUW A;  3VMH A;  2E76 D;  2HMO A;  2YFI A;  1SQV E;  1WW9 A;  2E74 D;  2DE6 A;  3GL2 A; 
#chains in the Genus database with same CATH homology
 2E4Q A;  2NUK A;  2A06 E;  3D89 A;  1RFS A;  3L70 E;  2XSO A;  3H1K E;  2B1X A;  3CX5 E;  1JM1 A;  3H1J E;  3H1L E;  4AIV A;  5HL4 A;  1O7G A;  3N0Q A;  4HKV A;  2GBX A;  2JZA A;  1UUV A;  5AEU A;  3VMG D;  4EMJ B;  3GZY A;  4H13 D;  3VMG A;  3H1H E;  1NDO A;  4PD4 E;  2JO6 A;  3BCC E;  4H44 D;  5KLV E;  4NBF D;  3TGU E;  1SQB E;  1O7P A;  2YFL A;  2YFJ A;  2BMQ A;  1EZV E;  3VMH D;  4NBF A;  3L75 E;  1RIE A;  3L74 E;  4PV1 D;  3GTE A;  3CXH E;  3VCA A;  5KKZ C;  4NBG A;  4HM1 A;  1PPJ E;  2DE5 D;  4NBE D;  1BCC E;  2NVE A;  1NU1 E;  1Z01 A;  2ZT9 D;  3AZC A;  3L72 E;  2DE5 A;  4NBB A;  4NBE A;  2Q3W A;  1ZRT E;  2HMJ A;  1SJG A;  3EN1 A;  4HM7 A;  3GTS A;  4OGQ D;  2IBZ E;  1VF5 D;  1O7M A;  4HM4 A;  4HM8 A;  4P1C H;  2DE7 A;  2I7F A;  3GB4 A;  1Q90 C;  2HMN A;  1SQX E;  3EQQ A;  4NB8 D;  2XRX A;  3FOU A;  2NVG A;  4NB8 A;  2YVJ B;  1KB9 E;  4HM5 A;  2NWF A;  4QDF A;  4NBG D;  3L71 E;  1Z02 A;  3VMI A;  2BMO A;  3GKE A;  1SQP E;  2GBW A;  2QJK C;  4NBB D;  2HMM A;  3CWB E;  5CXM A;  4QDD A;  1ULI A;  2E4P A;  4HM6 A;  3GKQ A;  1VM9 A;  1O7H A;  2ZYL A;  2BMR A;  1Z03 A;  1VCK A;  3DQY A;  1NYK A;  2HML A;  2NUM A;  3C0D A;  2B24 A;  2DE7 D;  3GL0 A;  1G8K B;  2BCC E;  1FQT A;  4NBA A;  1ULJ A;  4NBH A;  4HM2 A;  1KYO E;  4QUQ A;  1NTZ E;  1EG9 A;  1G8J B;  2NVF A;  2XSH A;  3L73 E;  2XR8 A;  1WQL A;  4QUP A;  1O7W A;  1SQQ E;  4NBC D;  3VMI D;  2FYU E;  1P84 E;  5AEW A;  4NB9 D;  3VCP A;  2HMK A;  4NBC A;  2D2C D;  4NB9 A;  2YIU C;  2FYN C;  1L0N E;  4HM0 A;  4AAY B;  4QUR A;  3H1I E;  1O7N A;  4HJL A;  4U3F E;  5KLI C;  3GCF A;  4QCK A;  1NTK E;  2QPZ A;  4P1B H;  4QDC A;  4NBA D;  4NBH D;  3GCE A;  4HM3 A;  3GZX A;  4NBD D;  4H0L D;  2QJY C;  1L0L E;  1NTM E;  2CKF A;  4QDF B;  4NBD A;  1BE3 E;  2E75 D;  2QJP C;  3GOB A;  5BOK A;  1PP9 E;  2DE6 D;  1UUW A;  3VMH A;  2E76 D;  2HMO A;  2YFI A;  1SQV E;  1WW9 A;  2E74 D;  2DE6 A;  3GL2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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