2HMMA

Crystal structure of naphthalene 1,2-dioxygenase bound to anthracene
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
molecule tags Oxidoreductase
total genus 159
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmmA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmmA01
3N0QA 2B1XA 2XSHA 1VF5D 2E76D 4AAYB 2NVFA 2HMLA 1SQPE 3H1KE 1VM9A 1P84E 4QDCA 5AEWA 3VCPA 1RIEA 2HMJA 3GL0A 3L73E 1KB9E 4OGQD 2DE7A 2YVJB 4NBHA 3VMIA 4QDDA 5CXMA 3GL2A 1EZVE 4NBED 2BMQA 3GOBA 5BOKA 2HMNA 4NBBD 4HM8A 2DE5D 3H1JE 4NBCD 1SQQE 4P1BH 2ZT9D 2BCCE 3GKQA 2BMRA 3GZYA 4HM7A 4NB8A 2XR8A 3GCEA 5KLVE 4NBFA 2I7FA 4QUPA 2YFJA 2FYUE 2QJKC 3GKEA 4PD4E 2DE7D 4H13D 3VMID 4NBHD 3L75E 4NBGA 4P1CH 3VMGA 3L72E 1O7MA 2HMOA 2XRXA 1O7NA 1VCKA 1PPJE 4H0LD 3H1LE 2YFIA 4EMJB 4PV1D 2A06E 3L74E 4NBAA 4QDFB 1G8JB 1Z01A 4NB8D 2CKFA 2D2CD 4NBFD 4QCKA 2GBXA 3CX5E 3GB4A 1SQBE 4HM4A 4HM1A 1SQVE 2E75D 2NVGA 2IBZE 1Q90C 4HM3A 2NUKA 2DE5A 1Z03A 2YFLA 4HM6A 1ULIA 5KKZC 4U3FE 3EQQA 3H1HE 4NBGD 3VMGD 4NB9A 1BCCE 5AEUA 4NBDA 1O7PA 2QJYC 1UUWA 2E74D 4NBAD 2BMOA 2ZYLA 3GTSA 1JM1A 2NWFA 1KYOE 2DE6A 2HMMA 1L0LE 1NTME 1ULJA 2YIUC 1O7WA 4AIVA 1NDOA 5KLIC 3L70E 1FQTA 1O7GA 1Z02A 1L0NE 3GCFA 2GBWA 3GZXA 3BCCE 4NB9D 2E4PA 1RFSA 4HM5A 4NBDD 2QJPC 1NTZE 2NUMA 1ZRTE 1EG9A 3AZCA 3EN1A 3GTEA 3TGUE 1SQXE 2E4QA 2JO6A 4H44D 2XSOA 3VMHA 3CXHE 4HM2A 2DE6D 1NU1E 1SJGA 1UUVA 1O7HA 2HMKA 2JZAA 2B24A 4QURA 1NYKA 1G8KB 2NVEA 4QUQA 1WQLA 4QDFA 1WW9A 3D89A 4HKVA 4HJLA 2QPZA 2FYNC 3C0DA 3VCAA 3L71E 3CWBE 5HL4A 3H1IE 3FOUA 4HM0A 2Q3WA 4NBEA 1BE3E 3DQYA 4NBBA 1PP9E 1NTKE 3VMHD 4NBCA
chains in the Genus database with same CATH superfamily
3N0QA 2B1XA 2XSHA 1VF5D 2E76D 4AAYB 2NVFA 2HMLA 1SQPE 3H1KE 1VM9A 1P84E 4QDCA 5AEWA 3VCPA 1RIEA 2HMJA 3GL0A 3L73E 1KB9E 4OGQD 2DE7A 2YVJB 4NBHA 3VMIA 4QDDA 5CXMA 3GL2A 1EZVE 4NBED 2BMQA 3GOBA 5BOKA 2HMNA 4NBBD 4HM8A 2DE5D 3H1JE 4NBCD 1SQQE 4P1BH 2ZT9D 2BCCE 3GKQA 2BMRA 3GZYA 4HM7A 4NB8A 2XR8A 3GCEA 5KLVE 4NBFA 2I7FA 4QUPA 2YFJA 2FYUE 2QJKC 3GKEA 4PD4E 2DE7D 4H13D 3VMID 4NBHD 3L75E 4NBGA 4P1CH 3VMGA 3L72E 1O7MA 2HMOA 2XRXA 1O7NA 1VCKA 1PPJE 4H0LD 3H1LE 2YFIA 4EMJB 4PV1D 2A06E 3L74E 4NBAA 4QDFB 1G8JB 1Z01A 4NB8D 2CKFA 2D2CD 4NBFD 4QCKA 2GBXA 3CX5E 3GB4A 1SQBE 4HM4A 4HM1A 1SQVE 2E75D 2NVGA 2IBZE 1Q90C 4HM3A 2NUKA 2DE5A 1Z03A 2YFLA 4HM6A 1ULIA 5KKZC 4U3FE 3EQQA 3H1HE 4NBGD 3VMGD 4NB9A 1BCCE 5AEUA 4NBDA 1O7PA 2QJYC 1UUWA 2E74D 4NBAD 2BMOA 2ZYLA 3GTSA 1JM1A 2NWFA 1KYOE 2DE6A 2HMMA 1L0LE 1NTME 1ULJA 2YIUC 1O7WA 4AIVA 1NDOA 5KLIC 3L70E 1FQTA 1O7GA 1Z02A 1L0NE 3GCFA 2GBWA 3GZXA 3BCCE 4NB9D 2E4PA 1RFSA 4HM5A 4NBDD 2QJPC 1NTZE 2NUMA 1ZRTE 1EG9A 3AZCA 3EN1A 3GTEA 3TGUE 1SQXE 2E4QA 2JO6A 4H44D 2XSOA 3VMHA 3CXHE 4HM2A 2DE6D 1NU1E 1SJGA 1UUVA 1O7HA 2HMKA 2JZAA 2B24A 4QURA 1NYKA 1G8KB 2NVEA 4QUQA 1WQLA 4QDFA 1WW9A 3D89A 4HKVA 4HJLA 2QPZA 2FYNC 3C0DA 3VCAA 3L71E 3CWBE 5HL4A 3H1IE 3FOUA 4HM0A 2Q3WA 4NBEA 1BE3E 3DQYA 4NBBA 1PP9E 1NTKE 3VMHD 4NBCA
chains in the Genus database with same CATH topology
3N0QA 2B1XA 2XSHA 1VF5D 2E76D 4AAYB 2NVFA 2HMLA 1SQPE 3H1KE 1VM9A 1P84E 4QDCA 5AEWA 3VCPA 1RIEA 2HMJA 3GL0A 3L73E 1KB9E 4OGQD 2DE7A 2YVJB 4NBHA 3VMIA 4QDDA 5CXMA 3GL2A 1EZVE 4NBED 2BMQA 3GOBA 5BOKA 2HMNA 4NBBD 4HM8A 2DE5D 3H1JE 4NBCD 1SQQE 4P1BH 2ZT9D 2BCCE 3GKQA 2BMRA 3GZYA 4HM7A 4NB8A 2XR8A 3GCEA 5KLVE 4NBFA 2I7FA 4QUPA 2YFJA 2FYUE 2QJKC 3GKEA 4PD4E 2DE7D 4H13D 3VMID 4NBHD 3L75E 4NBGA 4P1CH 3VMGA 3L72E 1O7MA 2HMOA 2XRXA 1O7NA 1VCKA 1PPJE 4H0LD 3H1LE 2YFIA 4EMJB 4PV1D 2A06E 3L74E 4NBAA 4QDFB 1G8JB 1Z01A 4NB8D 2CKFA 2D2CD 4NBFD 4QCKA 2GBXA 3CX5E 3GB4A 1SQBE 4HM4A 4HM1A 1SQVE 2E75D 2NVGA 2IBZE 1Q90C 4HM3A 2NUKA 2DE5A 1Z03A 2YFLA 4HM6A 1ULIA 5KKZC 4U3FE 3EQQA 3H1HE 4NBGD 3VMGD 4NB9A 1BCCE 5AEUA 4NBDA 1O7PA 2QJYC 1UUWA 2E74D 4NBAD 2BMOA 2ZYLA 3GTSA 1JM1A 2NWFA 1KYOE 2DE6A 2HMMA 1L0LE 1NTME 1ULJA 2YIUC 1O7WA 4AIVA 1NDOA 5KLIC 3L70E 1FQTA 1O7GA 1Z02A 1L0NE 3GCFA 2GBWA 3GZXA 3BCCE 4NB9D 2E4PA 1RFSA 4HM5A 4NBDD 2QJPC 1NTZE 2NUMA 1ZRTE 1EG9A 3AZCA 3EN1A 3GTEA 3TGUE 1SQXE 2E4QA 2JO6A 4H44D 2XSOA 3VMHA 3CXHE 4HM2A 2DE6D 1NU1E 1SJGA 1UUVA 1O7HA 2HMKA 2JZAA 2B24A 4QURA 1NYKA 1G8KB 2NVEA 4QUQA 1WQLA 4QDFA 1WW9A 3D89A 4HKVA 4HJLA 2QPZA 2FYNC 3C0DA 3VCAA 3L71E 3CWBE 5HL4A 3H1IE 3FOUA 4HM0A 2Q3WA 4NBEA 1BE3E 3DQYA 4NBBA 1PP9E 1NTKE 3VMHD 4NBCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N0Q A;  2B1X A;  2XSH A;  1VF5 D;  2E76 D;  4AAY B;  2NVF A;  2HML A;  1SQP E;  3H1K E;  1VM9 A;  1P84 E;  4QDC A;  5AEW A;  3VCP A;  1RIE A;  2HMJ A;  3GL0 A;  3L73 E;  1KB9 E;  4OGQ D;  2DE7 A;  2YVJ B;  4NBH A;  3VMI A;  4QDD A;  5CXM A;  3GL2 A;  1EZV E;  4NBE D;  2BMQ A;  3GOB A;  5BOK A;  2HMN A;  4NBB D;  4HM8 A;  2DE5 D;  3H1J E;  4NBC D;  1SQQ E;  4P1B H;  2ZT9 D;  2BCC E;  3GKQ A;  2BMR A;  3GZY A;  4HM7 A;  4NB8 A;  2XR8 A;  3GCE A;  5KLV E;  4NBF A;  2I7F A;  4QUP A;  2YFJ A;  2FYU E;  2QJK C;  3GKE A;  4PD4 E;  2DE7 D;  4H13 D;  3VMI D;  4NBH D;  3L75 E;  4NBG A;  4P1C H;  3VMG A;  3L72 E;  1O7M A;  2HMO A;  2XRX A;  1O7N A;  1VCK A;  1PPJ E;  4H0L D;  3H1L E;  2YFI A;  4EMJ B;  4PV1 D;  2A06 E;  3L74 E;  4NBA A;  4QDF B;  1G8J B;  1Z01 A;  4NB8 D;  2CKF A;  2D2C D;  4NBF D;  4QCK A;  2GBX A;  3CX5 E;  3GB4 A;  1SQB E;  4HM4 A;  4HM1 A;  1SQV E;  2E75 D;  2NVG A;  2IBZ E;  1Q90 C;  4HM3 A;  2NUK A;  2DE5 A;  1Z03 A;  2YFL A;  4HM6 A;  1ULI A;  5KKZ C;  4U3F E;  3EQQ A;  3H1H E;  4NBG D;  3VMG D;  4NB9 A;  1BCC E;  5AEU A;  4NBD A;  1O7P A;  2QJY C;  1UUW A;  2E74 D;  4NBA D;  2BMO A;  2ZYL A;  3GTS A;  1JM1 A;  2NWF A;  1KYO E;  2DE6 A;  2HMM A;  1L0L E;  1NTM E;  1ULJ A;  2YIU C;  1O7W A;  4AIV A;  1NDO A;  5KLI C;  3L70 E;  1FQT A;  1O7G A;  1Z02 A;  1L0N E;  3GCF A;  2GBW A;  3GZX A;  3BCC E;  4NB9 D;  2E4P A;  1RFS A;  4HM5 A;  4NBD D;  2QJP C;  1NTZ E;  2NUM A;  1ZRT E;  1EG9 A;  3AZC A;  3EN1 A;  3GTE A;  3TGU E;  1SQX E;  2E4Q A;  2JO6 A;  4H44 D;  2XSO A;  3VMH A;  3CXH E;  4HM2 A;  2DE6 D;  1NU1 E;  1SJG A;  1UUV A;  1O7H A;  2HMK A;  2JZA A;  2B24 A;  4QUR A;  1NYK A;  1G8K B;  2NVE A;  4QUQ A;  1WQL A;  4QDF A;  1WW9 A;  3D89 A;  4HKV A;  4HJL A;  2QPZ A;  2FYN C;  3C0D A;  3VCA A;  3L71 E;  3CWB E;  5HL4 A;  3H1I E;  3FOU A;  4HM0 A;  2Q3W A;  4NBE A;  1BE3 E;  3DQY A;  4NBB A;  1PP9 E;  1NTK E;  3VMH D;  4NBC A; 
#chains in the Genus database with same CATH topology
 3N0Q A;  2B1X A;  2XSH A;  1VF5 D;  2E76 D;  4AAY B;  2NVF A;  2HML A;  1SQP E;  3H1K E;  1VM9 A;  1P84 E;  4QDC A;  5AEW A;  3VCP A;  1RIE A;  2HMJ A;  3GL0 A;  3L73 E;  1KB9 E;  4OGQ D;  2DE7 A;  2YVJ B;  4NBH A;  3VMI A;  4QDD A;  5CXM A;  3GL2 A;  1EZV E;  4NBE D;  2BMQ A;  3GOB A;  5BOK A;  2HMN A;  4NBB D;  4HM8 A;  2DE5 D;  3H1J E;  4NBC D;  1SQQ E;  4P1B H;  2ZT9 D;  2BCC E;  3GKQ A;  2BMR A;  3GZY A;  4HM7 A;  4NB8 A;  2XR8 A;  3GCE A;  5KLV E;  4NBF A;  2I7F A;  4QUP A;  2YFJ A;  2FYU E;  2QJK C;  3GKE A;  4PD4 E;  2DE7 D;  4H13 D;  3VMI D;  4NBH D;  3L75 E;  4NBG A;  4P1C H;  3VMG A;  3L72 E;  1O7M A;  2HMO A;  2XRX A;  1O7N A;  1VCK A;  1PPJ E;  4H0L D;  3H1L E;  2YFI A;  4EMJ B;  4PV1 D;  2A06 E;  3L74 E;  4NBA A;  4QDF B;  1G8J B;  1Z01 A;  4NB8 D;  2CKF A;  2D2C D;  4NBF D;  4QCK A;  2GBX A;  3CX5 E;  3GB4 A;  1SQB E;  4HM4 A;  4HM1 A;  1SQV E;  2E75 D;  2NVG A;  2IBZ E;  1Q90 C;  4HM3 A;  2NUK A;  2DE5 A;  1Z03 A;  2YFL A;  4HM6 A;  1ULI A;  5KKZ C;  4U3F E;  3EQQ A;  3H1H E;  4NBG D;  3VMG D;  4NB9 A;  1BCC E;  5AEU A;  4NBD A;  1O7P A;  2QJY C;  1UUW A;  2E74 D;  4NBA D;  2BMO A;  2ZYL A;  3GTS A;  1JM1 A;  2NWF A;  1KYO E;  2DE6 A;  2HMM A;  1L0L E;  1NTM E;  1ULJ A;  2YIU C;  1O7W A;  4AIV A;  1NDO A;  5KLI C;  3L70 E;  1FQT A;  1O7G A;  1Z02 A;  1L0N E;  3GCF A;  2GBW A;  3GZX A;  3BCC E;  4NB9 D;  2E4P A;  1RFS A;  4HM5 A;  4NBD D;  2QJP C;  1NTZ E;  2NUM A;  1ZRT E;  1EG9 A;  3AZC A;  3EN1 A;  3GTE A;  3TGU E;  1SQX E;  2E4Q A;  2JO6 A;  4H44 D;  2XSO A;  3VMH A;  3CXH E;  4HM2 A;  2DE6 D;  1NU1 E;  1SJG A;  1UUV A;  1O7H A;  2HMK A;  2JZA A;  2B24 A;  4QUR A;  1NYK A;  1G8K B;  2NVE A;  4QUQ A;  1WQL A;  4QDF A;  1WW9 A;  3D89 A;  4HKV A;  4HJL A;  2QPZ A;  2FYN C;  3C0D A;  3VCA A;  3L71 E;  3CWB E;  5HL4 A;  3H1I E;  3FOU A;  4HM0 A;  2Q3W A;  4NBE A;  1BE3 E;  3DQY A;  4NBB A;  1PP9 E;  1NTK E;  3VMH D;  4NBC A; 
#chains in the Genus database with same CATH homology
 3N0Q A;  2B1X A;  2XSH A;  1VF5 D;  2E76 D;  4AAY B;  2NVF A;  2HML A;  1SQP E;  3H1K E;  1VM9 A;  1P84 E;  4QDC A;  5AEW A;  3VCP A;  1RIE A;  2HMJ A;  3GL0 A;  3L73 E;  1KB9 E;  4OGQ D;  2DE7 A;  2YVJ B;  4NBH A;  3VMI A;  4QDD A;  5CXM A;  3GL2 A;  1EZV E;  4NBE D;  2BMQ A;  3GOB A;  5BOK A;  2HMN A;  4NBB D;  4HM8 A;  2DE5 D;  3H1J E;  4NBC D;  1SQQ E;  4P1B H;  2ZT9 D;  2BCC E;  3GKQ A;  2BMR A;  3GZY A;  4HM7 A;  4NB8 A;  2XR8 A;  3GCE A;  5KLV E;  4NBF A;  2I7F A;  4QUP A;  2YFJ A;  2FYU E;  2QJK C;  3GKE A;  4PD4 E;  2DE7 D;  4H13 D;  3VMI D;  4NBH D;  3L75 E;  4NBG A;  4P1C H;  3VMG A;  3L72 E;  1O7M A;  2HMO A;  2XRX A;  1O7N A;  1VCK A;  1PPJ E;  4H0L D;  3H1L E;  2YFI A;  4EMJ B;  4PV1 D;  2A06 E;  3L74 E;  4NBA A;  4QDF B;  1G8J B;  1Z01 A;  4NB8 D;  2CKF A;  2D2C D;  4NBF D;  4QCK A;  2GBX A;  3CX5 E;  3GB4 A;  1SQB E;  4HM4 A;  4HM1 A;  1SQV E;  2E75 D;  2NVG A;  2IBZ E;  1Q90 C;  4HM3 A;  2NUK A;  2DE5 A;  1Z03 A;  2YFL A;  4HM6 A;  1ULI A;  5KKZ C;  4U3F E;  3EQQ A;  3H1H E;  4NBG D;  3VMG D;  4NB9 A;  1BCC E;  5AEU A;  4NBD A;  1O7P A;  2QJY C;  1UUW A;  2E74 D;  4NBA D;  2BMO A;  2ZYL A;  3GTS A;  1JM1 A;  2NWF A;  1KYO E;  2DE6 A;  2HMM A;  1L0L E;  1NTM E;  1ULJ A;  2YIU C;  1O7W A;  4AIV A;  1NDO A;  5KLI C;  3L70 E;  1FQT A;  1O7G A;  1Z02 A;  1L0N E;  3GCF A;  2GBW A;  3GZX A;  3BCC E;  4NB9 D;  2E4P A;  1RFS A;  4HM5 A;  4NBD D;  2QJP C;  1NTZ E;  2NUM A;  1ZRT E;  1EG9 A;  3AZC A;  3EN1 A;  3GTE A;  3TGU E;  1SQX E;  2E4Q A;  2JO6 A;  4H44 D;  2XSO A;  3VMH A;  3CXH E;  4HM2 A;  2DE6 D;  1NU1 E;  1SJG A;  1UUV A;  1O7H A;  2HMK A;  2JZA A;  2B24 A;  4QUR A;  1NYK A;  1G8K B;  2NVE A;  4QUQ A;  1WQL A;  4QDF A;  1WW9 A;  3D89 A;  4HKV A;  4HJL A;  2QPZ A;  2FYN C;  3C0D A;  3VCA A;  3L71 E;  3CWB E;  5HL4 A;  3H1I E;  3FOU A;  4HM0 A;  2Q3W A;  4NBE A;  1BE3 E;  3DQY A;  4NBB A;  1PP9 E;  1NTK E;  3VMH D;  4NBC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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