2HMMA

Crystal structure of naphthalene 1,2-dioxygenase bound to anthracene
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
source organism Pseudomonas sp.
total genus 159
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmmA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmmA01
2JO6A 2IBZE 2DE7D 3VMID 2CKFA 4P1CH 2HMNA 1PP9E 4NBHD 3L75E 1L0LE 1KYOE 4QUPA 4NBFD 1O7WA 1L0NE 2FYNC 3GB4A 1Z01A 4H0LD 3GZXA 4HM7A 4NBGA 4NBBD 1NTZE 5AEUA 2A06E 1PPJE 2QJKC 2HMLA 1KB9E 4NB8D 2NUMA 4HM0A 1SQVE 3VMGD 3CX5E 1O7PA 2NVFA 3CXHE 2HMOA 2ZYLA 4H13D 4PD4E 4HM3A 3N0QA 5CXMA 2BCCE 3VMHA 1NTKE 4NBBA 2HMMA 2XRXA 4NBAD 4QUQA 2Q3WA 3GTEA 1O7NA 4NB8A 1ULIA 4H44D 1UUWA 1VF5D 4QDDA 2QJPC 4QDFA 2QJYC 5BOKA 2BMQA 1BE3E 3H1HE 3GCFA 4QCKA 2E4QA 3VCAA 1WW9A 3EN1A 3GZYA 1Q90C 3L70E 4NBED 2YFLA 3H1KE 4NBDD 1SQBE 2DE7A 3VMIA 3L74E 2NWFA 3VCPA 3EQQA 1Z02A 4NBHA 2GBXA 5HL4A 1WQLA 4HM1A 4NBFA 2XSHA 4EMJB 3GL2A 4QDFB 4HM5A 4PV1D 2NUKA 4NBEA 3DQYA 4HM6A 2YIUC 2HMJA 2GBWA 5KLVE 1O7MA 3VMGA 1G8JB 1O7GA 3L73E 1SQPE 2BMOA 2NVEA 1NTME 3L71E 4AIVA 2B24A 3GCEA 3BCCE 3L72E 4NB9D 4HM4A 2FYUE 1NDOA 1VCKA 4NBAA 3GKQA 1RFSA 3H1IE 4HKVA 1ZRTE 2DE6D 3FOUA 2E76D 3CWBE 1SQQE 4NBCD 4AAYB 2D2CD 2DE5D 1RIEA 1FQTA 2XR8A 2B1XA 2BMRA 4U3FE 2ZT9D 2E4PA 2HMKA 1UUVA 3H1JE 2YVJB 4NB9A 2QPZA 2XSOA 4HJLA 5KLIC 1P84E 4HM2A 4QURA 5AEWA 3GKEA 1BCCE 1EG9A 1SJGA 2JZAA 2YFIA 2DE6A 4NBDA 4NBCA 3AZCA 2YFJA 2DE5A 3VMHD 2E75D 1SQXE 3D89A 2E74D 4OGQD 3GL0A 4HM8A 1O7HA 4P1BH 2NVGA 1JM1A 1EZVE 2I7FA 1ULJA 4QDCA 1Z03A 3GTSA 3C0DA 1G8KB 3GOBA 4NBGD 3TGUE 1NYKA 1NU1E 3H1LE 1VM9A 5KKZC
chains in the Genus database with same CATH superfamily
2JO6A 2IBZE 2DE7D 3VMID 2CKFA 4P1CH 2HMNA 1PP9E 4NBHD 3L75E 1L0LE 1KYOE 4QUPA 4NBFD 1O7WA 1L0NE 2FYNC 3GB4A 1Z01A 4H0LD 3GZXA 4HM7A 4NBGA 4NBBD 1NTZE 5AEUA 2A06E 1PPJE 2QJKC 2HMLA 1KB9E 4NB8D 2NUMA 4HM0A 1SQVE 3VMGD 3CX5E 1O7PA 2NVFA 3CXHE 2HMOA 2ZYLA 4H13D 4PD4E 4HM3A 3N0QA 5CXMA 2BCCE 3VMHA 1NTKE 4NBBA 2HMMA 2XRXA 4NBAD 4QUQA 2Q3WA 3GTEA 1O7NA 4NB8A 1ULIA 4H44D 1UUWA 1VF5D 4QDDA 2QJPC 4QDFA 2QJYC 5BOKA 2BMQA 1BE3E 3H1HE 3GCFA 4QCKA 2E4QA 3VCAA 1WW9A 3EN1A 3GZYA 1Q90C 3L70E 4NBED 2YFLA 3H1KE 4NBDD 1SQBE 2DE7A 3VMIA 3L74E 2NWFA 3VCPA 3EQQA 1Z02A 4NBHA 2GBXA 5HL4A 1WQLA 4HM1A 4NBFA 2XSHA 4EMJB 3GL2A 4QDFB 4HM5A 4PV1D 2NUKA 4NBEA 3DQYA 4HM6A 2YIUC 2HMJA 2GBWA 5KLVE 1O7MA 3VMGA 1G8JB 1O7GA 3L73E 1SQPE 2BMOA 2NVEA 1NTME 3L71E 4AIVA 2B24A 3GCEA 3BCCE 3L72E 4NB9D 4HM4A 2FYUE 1NDOA 1VCKA 4NBAA 3GKQA 1RFSA 3H1IE 4HKVA 1ZRTE 2DE6D 3FOUA 2E76D 3CWBE 1SQQE 4NBCD 4AAYB 2D2CD 2DE5D 1RIEA 1FQTA 2XR8A 2B1XA 2BMRA 4U3FE 2ZT9D 2E4PA 2HMKA 1UUVA 3H1JE 2YVJB 4NB9A 2QPZA 2XSOA 4HJLA 5KLIC 1P84E 4HM2A 4QURA 5AEWA 3GKEA 1BCCE 1EG9A 1SJGA 2JZAA 2YFIA 2DE6A 4NBDA 4NBCA 3AZCA 2YFJA 2DE5A 3VMHD 2E75D 1SQXE 3D89A 2E74D 4OGQD 3GL0A 4HM8A 1O7HA 4P1BH 2NVGA 1JM1A 1EZVE 2I7FA 1ULJA 4QDCA 1Z03A 3GTSA 3C0DA 1G8KB 3GOBA 4NBGD 3TGUE 1NYKA 1NU1E 3H1LE 1VM9A 5KKZC
chains in the Genus database with same CATH topology
2JO6A 2IBZE 2DE7D 3VMID 2CKFA 4P1CH 2HMNA 1PP9E 4NBHD 3L75E 1L0LE 1KYOE 4QUPA 4NBFD 1O7WA 1L0NE 2FYNC 3GB4A 1Z01A 4H0LD 3GZXA 4HM7A 4NBGA 4NBBD 1NTZE 5AEUA 2A06E 1PPJE 2QJKC 2HMLA 1KB9E 4NB8D 2NUMA 4HM0A 1SQVE 3VMGD 3CX5E 1O7PA 2NVFA 3CXHE 2HMOA 2ZYLA 4H13D 4PD4E 4HM3A 3N0QA 5CXMA 2BCCE 3VMHA 1NTKE 4NBBA 2HMMA 2XRXA 4NBAD 4QUQA 2Q3WA 3GTEA 1O7NA 4NB8A 1ULIA 4H44D 1UUWA 1VF5D 4QDDA 2QJPC 4QDFA 2QJYC 5BOKA 2BMQA 1BE3E 3H1HE 3GCFA 4QCKA 2E4QA 3VCAA 1WW9A 3EN1A 3GZYA 1Q90C 3L70E 4NBED 2YFLA 3H1KE 4NBDD 1SQBE 2DE7A 3VMIA 3L74E 2NWFA 3VCPA 3EQQA 1Z02A 4NBHA 2GBXA 5HL4A 1WQLA 4HM1A 4NBFA 2XSHA 4EMJB 3GL2A 4QDFB 4HM5A 4PV1D 2NUKA 4NBEA 3DQYA 4HM6A 2YIUC 2HMJA 2GBWA 5KLVE 1O7MA 3VMGA 1G8JB 1O7GA 3L73E 1SQPE 2BMOA 2NVEA 1NTME 3L71E 4AIVA 2B24A 3GCEA 3BCCE 3L72E 4NB9D 4HM4A 2FYUE 1NDOA 1VCKA 4NBAA 3GKQA 1RFSA 3H1IE 4HKVA 1ZRTE 2DE6D 3FOUA 2E76D 3CWBE 1SQQE 4NBCD 4AAYB 2D2CD 2DE5D 1RIEA 1FQTA 2XR8A 2B1XA 2BMRA 4U3FE 2ZT9D 2E4PA 2HMKA 1UUVA 3H1JE 2YVJB 4NB9A 2QPZA 2XSOA 4HJLA 5KLIC 1P84E 4HM2A 4QURA 5AEWA 3GKEA 1BCCE 1EG9A 1SJGA 2JZAA 2YFIA 2DE6A 4NBDA 4NBCA 3AZCA 2YFJA 2DE5A 3VMHD 2E75D 1SQXE 3D89A 2E74D 4OGQD 3GL0A 4HM8A 1O7HA 4P1BH 2NVGA 1JM1A 1EZVE 2I7FA 1ULJA 4QDCA 1Z03A 3GTSA 3C0DA 1G8KB 3GOBA 4NBGD 3TGUE 1NYKA 1NU1E 3H1LE 1VM9A 5KKZC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JO6 A;  2IBZ E;  2DE7 D;  3VMI D;  2CKF A;  4P1C H;  2HMN A;  1PP9 E;  4NBH D;  3L75 E;  1L0L E;  1KYO E;  4QUP A;  4NBF D;  1O7W A;  1L0N E;  2FYN C;  3GB4 A;  1Z01 A;  4H0L D;  3GZX A;  4HM7 A;  4NBG A;  4NBB D;  1NTZ E;  5AEU A;  2A06 E;  1PPJ E;  2QJK C;  2HML A;  1KB9 E;  4NB8 D;  2NUM A;  4HM0 A;  1SQV E;  3VMG D;  3CX5 E;  1O7P A;  2NVF A;  3CXH E;  2HMO A;  2ZYL A;  4H13 D;  4PD4 E;  4HM3 A;  3N0Q A;  5CXM A;  2BCC E;  3VMH A;  1NTK E;  4NBB A;  2HMM A;  2XRX A;  4NBA D;  4QUQ A;  2Q3W A;  3GTE A;  1O7N A;  4NB8 A;  1ULI A;  4H44 D;  1UUW A;  1VF5 D;  4QDD A;  2QJP C;  4QDF A;  2QJY C;  5BOK A;  2BMQ A;  1BE3 E;  3H1H E;  3GCF A;  4QCK A;  2E4Q A;  3VCA A;  1WW9 A;  3EN1 A;  3GZY A;  1Q90 C;  3L70 E;  4NBE D;  2YFL A;  3H1K E;  4NBD D;  1SQB E;  2DE7 A;  3VMI A;  3L74 E;  2NWF A;  3VCP A;  3EQQ A;  1Z02 A;  4NBH A;  2GBX A;  5HL4 A;  1WQL A;  4HM1 A;  4NBF A;  2XSH A;  4EMJ B;  3GL2 A;  4QDF B;  4HM5 A;  4PV1 D;  2NUK A;  4NBE A;  3DQY A;  4HM6 A;  2YIU C;  2HMJ A;  2GBW A;  5KLV E;  1O7M A;  3VMG A;  1G8J B;  1O7G A;  3L73 E;  1SQP E;  2BMO A;  2NVE A;  1NTM E;  3L71 E;  4AIV A;  2B24 A;  3GCE A;  3BCC E;  3L72 E;  4NB9 D;  4HM4 A;  2FYU E;  1NDO A;  1VCK A;  4NBA A;  3GKQ A;  1RFS A;  3H1I E;  4HKV A;  1ZRT E;  2DE6 D;  3FOU A;  2E76 D;  3CWB E;  1SQQ E;  4NBC D;  4AAY B;  2D2C D;  2DE5 D;  1RIE A;  1FQT A;  2XR8 A;  2B1X A;  2BMR A;  4U3F E;  2ZT9 D;  2E4P A;  2HMK A;  1UUV A;  3H1J E;  2YVJ B;  4NB9 A;  2QPZ A;  2XSO A;  4HJL A;  5KLI C;  1P84 E;  4HM2 A;  4QUR A;  5AEW A;  3GKE A;  1BCC E;  1EG9 A;  1SJG A;  2JZA A;  2YFI A;  2DE6 A;  4NBD A;  4NBC A;  3AZC A;  2YFJ A;  2DE5 A;  3VMH D;  2E75 D;  1SQX E;  3D89 A;  2E74 D;  4OGQ D;  3GL0 A;  4HM8 A;  1O7H A;  4P1B H;  2NVG A;  1JM1 A;  1EZV E;  2I7F A;  1ULJ A;  4QDC A;  1Z03 A;  3GTS A;  3C0D A;  1G8K B;  3GOB A;  4NBG D;  3TGU E;  1NYK A;  1NU1 E;  3H1L E;  1VM9 A;  5KKZ C; 
#chains in the Genus database with same CATH topology
 2JO6 A;  2IBZ E;  2DE7 D;  3VMI D;  2CKF A;  4P1C H;  2HMN A;  1PP9 E;  4NBH D;  3L75 E;  1L0L E;  1KYO E;  4QUP A;  4NBF D;  1O7W A;  1L0N E;  2FYN C;  3GB4 A;  1Z01 A;  4H0L D;  3GZX A;  4HM7 A;  4NBG A;  4NBB D;  1NTZ E;  5AEU A;  2A06 E;  1PPJ E;  2QJK C;  2HML A;  1KB9 E;  4NB8 D;  2NUM A;  4HM0 A;  1SQV E;  3VMG D;  3CX5 E;  1O7P A;  2NVF A;  3CXH E;  2HMO A;  2ZYL A;  4H13 D;  4PD4 E;  4HM3 A;  3N0Q A;  5CXM A;  2BCC E;  3VMH A;  1NTK E;  4NBB A;  2HMM A;  2XRX A;  4NBA D;  4QUQ A;  2Q3W A;  3GTE A;  1O7N A;  4NB8 A;  1ULI A;  4H44 D;  1UUW A;  1VF5 D;  4QDD A;  2QJP C;  4QDF A;  2QJY C;  5BOK A;  2BMQ A;  1BE3 E;  3H1H E;  3GCF A;  4QCK A;  2E4Q A;  3VCA A;  1WW9 A;  3EN1 A;  3GZY A;  1Q90 C;  3L70 E;  4NBE D;  2YFL A;  3H1K E;  4NBD D;  1SQB E;  2DE7 A;  3VMI A;  3L74 E;  2NWF A;  3VCP A;  3EQQ A;  1Z02 A;  4NBH A;  2GBX A;  5HL4 A;  1WQL A;  4HM1 A;  4NBF A;  2XSH A;  4EMJ B;  3GL2 A;  4QDF B;  4HM5 A;  4PV1 D;  2NUK A;  4NBE A;  3DQY A;  4HM6 A;  2YIU C;  2HMJ A;  2GBW A;  5KLV E;  1O7M A;  3VMG A;  1G8J B;  1O7G A;  3L73 E;  1SQP E;  2BMO A;  2NVE A;  1NTM E;  3L71 E;  4AIV A;  2B24 A;  3GCE A;  3BCC E;  3L72 E;  4NB9 D;  4HM4 A;  2FYU E;  1NDO A;  1VCK A;  4NBA A;  3GKQ A;  1RFS A;  3H1I E;  4HKV A;  1ZRT E;  2DE6 D;  3FOU A;  2E76 D;  3CWB E;  1SQQ E;  4NBC D;  4AAY B;  2D2C D;  2DE5 D;  1RIE A;  1FQT A;  2XR8 A;  2B1X A;  2BMR A;  4U3F E;  2ZT9 D;  2E4P A;  2HMK A;  1UUV A;  3H1J E;  2YVJ B;  4NB9 A;  2QPZ A;  2XSO A;  4HJL A;  5KLI C;  1P84 E;  4HM2 A;  4QUR A;  5AEW A;  3GKE A;  1BCC E;  1EG9 A;  1SJG A;  2JZA A;  2YFI A;  2DE6 A;  4NBD A;  4NBC A;  3AZC A;  2YFJ A;  2DE5 A;  3VMH D;  2E75 D;  1SQX E;  3D89 A;  2E74 D;  4OGQ D;  3GL0 A;  4HM8 A;  1O7H A;  4P1B H;  2NVG A;  1JM1 A;  1EZV E;  2I7F A;  1ULJ A;  4QDC A;  1Z03 A;  3GTS A;  3C0D A;  1G8K B;  3GOB A;  4NBG D;  3TGU E;  1NYK A;  1NU1 E;  3H1L E;  1VM9 A;  5KKZ C; 
#chains in the Genus database with same CATH homology
 2JO6 A;  2IBZ E;  2DE7 D;  3VMI D;  2CKF A;  4P1C H;  2HMN A;  1PP9 E;  4NBH D;  3L75 E;  1L0L E;  1KYO E;  4QUP A;  4NBF D;  1O7W A;  1L0N E;  2FYN C;  3GB4 A;  1Z01 A;  4H0L D;  3GZX A;  4HM7 A;  4NBG A;  4NBB D;  1NTZ E;  5AEU A;  2A06 E;  1PPJ E;  2QJK C;  2HML A;  1KB9 E;  4NB8 D;  2NUM A;  4HM0 A;  1SQV E;  3VMG D;  3CX5 E;  1O7P A;  2NVF A;  3CXH E;  2HMO A;  2ZYL A;  4H13 D;  4PD4 E;  4HM3 A;  3N0Q A;  5CXM A;  2BCC E;  3VMH A;  1NTK E;  4NBB A;  2HMM A;  2XRX A;  4NBA D;  4QUQ A;  2Q3W A;  3GTE A;  1O7N A;  4NB8 A;  1ULI A;  4H44 D;  1UUW A;  1VF5 D;  4QDD A;  2QJP C;  4QDF A;  2QJY C;  5BOK A;  2BMQ A;  1BE3 E;  3H1H E;  3GCF A;  4QCK A;  2E4Q A;  3VCA A;  1WW9 A;  3EN1 A;  3GZY A;  1Q90 C;  3L70 E;  4NBE D;  2YFL A;  3H1K E;  4NBD D;  1SQB E;  2DE7 A;  3VMI A;  3L74 E;  2NWF A;  3VCP A;  3EQQ A;  1Z02 A;  4NBH A;  2GBX A;  5HL4 A;  1WQL A;  4HM1 A;  4NBF A;  2XSH A;  4EMJ B;  3GL2 A;  4QDF B;  4HM5 A;  4PV1 D;  2NUK A;  4NBE A;  3DQY A;  4HM6 A;  2YIU C;  2HMJ A;  2GBW A;  5KLV E;  1O7M A;  3VMG A;  1G8J B;  1O7G A;  3L73 E;  1SQP E;  2BMO A;  2NVE A;  1NTM E;  3L71 E;  4AIV A;  2B24 A;  3GCE A;  3BCC E;  3L72 E;  4NB9 D;  4HM4 A;  2FYU E;  1NDO A;  1VCK A;  4NBA A;  3GKQ A;  1RFS A;  3H1I E;  4HKV A;  1ZRT E;  2DE6 D;  3FOU A;  2E76 D;  3CWB E;  1SQQ E;  4NBC D;  4AAY B;  2D2C D;  2DE5 D;  1RIE A;  1FQT A;  2XR8 A;  2B1X A;  2BMR A;  4U3F E;  2ZT9 D;  2E4P A;  2HMK A;  1UUV A;  3H1J E;  2YVJ B;  4NB9 A;  2QPZ A;  2XSO A;  4HJL A;  5KLI C;  1P84 E;  4HM2 A;  4QUR A;  5AEW A;  3GKE A;  1BCC E;  1EG9 A;  1SJG A;  2JZA A;  2YFI A;  2DE6 A;  4NBD A;  4NBC A;  3AZC A;  2YFJ A;  2DE5 A;  3VMH D;  2E75 D;  1SQX E;  3D89 A;  2E74 D;  4OGQ D;  3GL0 A;  4HM8 A;  1O7H A;  4P1B H;  2NVG A;  1JM1 A;  1EZV E;  2I7F A;  1ULJ A;  4QDC A;  1Z03 A;  3GTS A;  3C0D A;  1G8K B;  3GOB A;  4NBG D;  3TGU E;  1NYK A;  1NU1 E;  3H1L E;  1VM9 A;  5KKZ C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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