2HMMA

Crystal structure of naphthalene 1,2-dioxygenase bound to anthracene
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Pseudomonas sp.
publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
total genus 159
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmmA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmmA01
1SQPE 5KLIC 2QJKC 3GZYA 4NBGA 5BOKA 4HKVA 4HM7A 3GOBA 4QURA 3L74E 1NTME 1PPJE 2FYUE 3GZXA 1L0NE 2FYNC 1VM9A 1VCKA 4H0LD 1FQTA 1BCCE 2XSOA 1NDOA 4HM6A 3VCPA 2E76D 2ZT9D 1ZRTE 5AEWA 3EN1A 3H1IE 3EQQA 3VMHD 2DE5A 2NUKA 3TGUE 4U3FE 2YFJA 2DE6D 4HM3A 4P1BH 4NB9A 4HM4A 1UUVA 1NTZE 4NBBA 4H44D 4AIVA 2CKFA 1SQBE 2HMJA 1P84E 1Q90C 2E74D 3H1KE 4QUPA 5CXMA 1BE3E 2NWFA 2YFIA 1Z03A 1UUWA 5KLVE 4NBCD 1RFSA 2HMKA 1NTKE 2QJPC 2B1XA 3GTSA 2BMOA 2A06E 1O7HA 5AEUA 2GBXA 2NVFA 3CX5E 4NBHA 4NBGD 3GKEA 4HM8A 1G8KB 1WQLA 3AZCA 3C0DA 4HJLA 3CXHE 2HMMA 3L71E 1VF5D 5KKZC 4NBAA 2ZYLA 3VMGD 1KB9E 3GTEA 3H1HE 1ULJA 1O7PA 1Z01A 1EZVE 1G8JB 2QPZA 1O7MA 4PV1D 2NVEA 3VCAA 2B24A 2BMQA 2DE5D 5HL4A 2Q3WA 4NB8D 2QJYC 4NBDD 1RIEA 3GB4A 3CWBE 3N0QA 2JZAA 4NB9D 4OGQD 3VMIA 4NBBD 3GCEA 2DE7A 1KYOE 2BCCE 2YFLA 4NBFA 1L0LE 4NBED 4QDCA 4EMJB 3GL2A 1O7NA 1ULIA 2HMLA 4QUQA 3DQYA 4HM5A 4QDDA 2HMOA 3H1LE 2GBWA 4AAYB 4H13D 3H1JE 2I7FA 1PP9E 2JO6A 2NUMA 1SQQE 2YIUC 1SQXE 3L72E 4NBHD 4P1CH 1SJGA 1O7WA 1JM1A 1NYKA 4QDFA 4NBAD 2HMNA 2YVJB 1WW9A 1NU1E 3VMGA 4QDFB 3VMHA 3L70E 2NVGA 3GL0A 2DE6A 1SQVE 2XSHA 2E4PA 2IBZE 3GCFA 2D2CD 1O7GA 3VMID 2DE7D 3FOUA 2XR8A 4HM1A 4NB8A 1EG9A 3L73E 4NBDA 2BMRA 3D89A 4HM2A 4NBFD 2XRXA 4NBCA 4HM0A 4QCKA 1Z02A 3L75E 2E4QA 3GKQA 4PD4E 3BCCE 4NBEA 2E75D
chains in the Genus database with same CATH superfamily
1SQPE 5KLIC 2QJKC 3GZYA 4NBGA 5BOKA 4HKVA 4HM7A 3GOBA 4QURA 3L74E 1NTME 1PPJE 2FYUE 3GZXA 1L0NE 2FYNC 1VM9A 1VCKA 4H0LD 1FQTA 1BCCE 2XSOA 1NDOA 4HM6A 3VCPA 2E76D 2ZT9D 1ZRTE 5AEWA 3EN1A 3H1IE 3EQQA 3VMHD 2DE5A 2NUKA 3TGUE 4U3FE 2YFJA 2DE6D 4HM3A 4P1BH 4NB9A 4HM4A 1UUVA 1NTZE 4NBBA 4H44D 4AIVA 2CKFA 1SQBE 2HMJA 1P84E 1Q90C 2E74D 3H1KE 4QUPA 5CXMA 1BE3E 2NWFA 2YFIA 1Z03A 1UUWA 5KLVE 4NBCD 1RFSA 2HMKA 1NTKE 2QJPC 2B1XA 3GTSA 2BMOA 2A06E 1O7HA 5AEUA 2GBXA 2NVFA 3CX5E 4NBHA 4NBGD 3GKEA 4HM8A 1G8KB 1WQLA 3AZCA 3C0DA 4HJLA 3CXHE 2HMMA 3L71E 1VF5D 5KKZC 4NBAA 2ZYLA 3VMGD 1KB9E 3GTEA 3H1HE 1ULJA 1O7PA 1Z01A 1EZVE 1G8JB 2QPZA 1O7MA 4PV1D 2NVEA 3VCAA 2B24A 2BMQA 2DE5D 5HL4A 2Q3WA 4NB8D 2QJYC 4NBDD 1RIEA 3GB4A 3CWBE 3N0QA 2JZAA 4NB9D 4OGQD 3VMIA 4NBBD 3GCEA 2DE7A 1KYOE 2BCCE 2YFLA 4NBFA 1L0LE 4NBED 4QDCA 4EMJB 3GL2A 1O7NA 1ULIA 2HMLA 4QUQA 3DQYA 4HM5A 4QDDA 2HMOA 3H1LE 2GBWA 4AAYB 4H13D 3H1JE 2I7FA 1PP9E 2JO6A 2NUMA 1SQQE 2YIUC 1SQXE 3L72E 4NBHD 4P1CH 1SJGA 1O7WA 1JM1A 1NYKA 4QDFA 4NBAD 2HMNA 2YVJB 1WW9A 1NU1E 3VMGA 4QDFB 3VMHA 3L70E 2NVGA 3GL0A 2DE6A 1SQVE 2XSHA 2E4PA 2IBZE 3GCFA 2D2CD 1O7GA 3VMID 2DE7D 3FOUA 2XR8A 4HM1A 4NB8A 1EG9A 3L73E 4NBDA 2BMRA 3D89A 4HM2A 4NBFD 2XRXA 4NBCA 4HM0A 4QCKA 1Z02A 3L75E 2E4QA 3GKQA 4PD4E 3BCCE 4NBEA 2E75D
chains in the Genus database with same CATH topology
1SQPE 5KLIC 2QJKC 3GZYA 4NBGA 5BOKA 4HKVA 4HM7A 3GOBA 4QURA 3L74E 1NTME 1PPJE 2FYUE 3GZXA 1L0NE 2FYNC 1VM9A 1VCKA 4H0LD 1FQTA 1BCCE 2XSOA 1NDOA 4HM6A 3VCPA 2E76D 2ZT9D 1ZRTE 5AEWA 3EN1A 3H1IE 3EQQA 3VMHD 2DE5A 2NUKA 3TGUE 4U3FE 2YFJA 2DE6D 4HM3A 4P1BH 4NB9A 4HM4A 1UUVA 1NTZE 4NBBA 4H44D 4AIVA 2CKFA 1SQBE 2HMJA 1P84E 1Q90C 2E74D 3H1KE 4QUPA 5CXMA 1BE3E 2NWFA 2YFIA 1Z03A 1UUWA 5KLVE 4NBCD 1RFSA 2HMKA 1NTKE 2QJPC 2B1XA 3GTSA 2BMOA 2A06E 1O7HA 5AEUA 2GBXA 2NVFA 3CX5E 4NBHA 4NBGD 3GKEA 4HM8A 1G8KB 1WQLA 3AZCA 3C0DA 4HJLA 3CXHE 2HMMA 3L71E 1VF5D 5KKZC 4NBAA 2ZYLA 3VMGD 1KB9E 3GTEA 3H1HE 1ULJA 1O7PA 1Z01A 1EZVE 1G8JB 2QPZA 1O7MA 4PV1D 2NVEA 3VCAA 2B24A 2BMQA 2DE5D 5HL4A 2Q3WA 4NB8D 2QJYC 4NBDD 1RIEA 3GB4A 3CWBE 3N0QA 2JZAA 4NB9D 4OGQD 3VMIA 4NBBD 3GCEA 2DE7A 1KYOE 2BCCE 2YFLA 4NBFA 1L0LE 4NBED 4QDCA 4EMJB 3GL2A 1O7NA 1ULIA 2HMLA 4QUQA 3DQYA 4HM5A 4QDDA 2HMOA 3H1LE 2GBWA 4AAYB 4H13D 3H1JE 2I7FA 1PP9E 2JO6A 2NUMA 1SQQE 2YIUC 1SQXE 3L72E 4NBHD 4P1CH 1SJGA 1O7WA 1JM1A 1NYKA 4QDFA 4NBAD 2HMNA 2YVJB 1WW9A 1NU1E 3VMGA 4QDFB 3VMHA 3L70E 2NVGA 3GL0A 2DE6A 1SQVE 2XSHA 2E4PA 2IBZE 3GCFA 2D2CD 1O7GA 3VMID 2DE7D 3FOUA 2XR8A 4HM1A 4NB8A 1EG9A 3L73E 4NBDA 2BMRA 3D89A 4HM2A 4NBFD 2XRXA 4NBCA 4HM0A 4QCKA 1Z02A 3L75E 2E4QA 3GKQA 4PD4E 3BCCE 4NBEA 2E75D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SQP E;  5KLI C;  2QJK C;  3GZY A;  4NBG A;  5BOK A;  4HKV A;  4HM7 A;  3GOB A;  4QUR A;  3L74 E;  1NTM E;  1PPJ E;  2FYU E;  3GZX A;  1L0N E;  2FYN C;  1VM9 A;  1VCK A;  4H0L D;  1FQT A;  1BCC E;  2XSO A;  1NDO A;  4HM6 A;  3VCP A;  2E76 D;  2ZT9 D;  1ZRT E;  5AEW A;  3EN1 A;  3H1I E;  3EQQ A;  3VMH D;  2DE5 A;  2NUK A;  3TGU E;  4U3F E;  2YFJ A;  2DE6 D;  4HM3 A;  4P1B H;  4NB9 A;  4HM4 A;  1UUV A;  1NTZ E;  4NBB A;  4H44 D;  4AIV A;  2CKF A;  1SQB E;  2HMJ A;  1P84 E;  1Q90 C;  2E74 D;  3H1K E;  4QUP A;  5CXM A;  1BE3 E;  2NWF A;  2YFI A;  1Z03 A;  1UUW A;  5KLV E;  4NBC D;  1RFS A;  2HMK A;  1NTK E;  2QJP C;  2B1X A;  3GTS A;  2BMO A;  2A06 E;  1O7H A;  5AEU A;  2GBX A;  2NVF A;  3CX5 E;  4NBH A;  4NBG D;  3GKE A;  4HM8 A;  1G8K B;  1WQL A;  3AZC A;  3C0D A;  4HJL A;  3CXH E;  2HMM A;  3L71 E;  1VF5 D;  5KKZ C;  4NBA A;  2ZYL A;  3VMG D;  1KB9 E;  3GTE A;  3H1H E;  1ULJ A;  1O7P A;  1Z01 A;  1EZV E;  1G8J B;  2QPZ A;  1O7M A;  4PV1 D;  2NVE A;  3VCA A;  2B24 A;  2BMQ A;  2DE5 D;  5HL4 A;  2Q3W A;  4NB8 D;  2QJY C;  4NBD D;  1RIE A;  3GB4 A;  3CWB E;  3N0Q A;  2JZA A;  4NB9 D;  4OGQ D;  3VMI A;  4NBB D;  3GCE A;  2DE7 A;  1KYO E;  2BCC E;  2YFL A;  4NBF A;  1L0L E;  4NBE D;  4QDC A;  4EMJ B;  3GL2 A;  1O7N A;  1ULI A;  2HML A;  4QUQ A;  3DQY A;  4HM5 A;  4QDD A;  2HMO A;  3H1L E;  2GBW A;  4AAY B;  4H13 D;  3H1J E;  2I7F A;  1PP9 E;  2JO6 A;  2NUM A;  1SQQ E;  2YIU C;  1SQX E;  3L72 E;  4NBH D;  4P1C H;  1SJG A;  1O7W A;  1JM1 A;  1NYK A;  4QDF A;  4NBA D;  2HMN A;  2YVJ B;  1WW9 A;  1NU1 E;  3VMG A;  4QDF B;  3VMH A;  3L70 E;  2NVG A;  3GL0 A;  2DE6 A;  1SQV E;  2XSH A;  2E4P A;  2IBZ E;  3GCF A;  2D2C D;  1O7G A;  3VMI D;  2DE7 D;  3FOU A;  2XR8 A;  4HM1 A;  4NB8 A;  1EG9 A;  3L73 E;  4NBD A;  2BMR A;  3D89 A;  4HM2 A;  4NBF D;  2XRX A;  4NBC A;  4HM0 A;  4QCK A;  1Z02 A;  3L75 E;  2E4Q A;  3GKQ A;  4PD4 E;  3BCC E;  4NBE A;  2E75 D; 
#chains in the Genus database with same CATH topology
 1SQP E;  5KLI C;  2QJK C;  3GZY A;  4NBG A;  5BOK A;  4HKV A;  4HM7 A;  3GOB A;  4QUR A;  3L74 E;  1NTM E;  1PPJ E;  2FYU E;  3GZX A;  1L0N E;  2FYN C;  1VM9 A;  1VCK A;  4H0L D;  1FQT A;  1BCC E;  2XSO A;  1NDO A;  4HM6 A;  3VCP A;  2E76 D;  2ZT9 D;  1ZRT E;  5AEW A;  3EN1 A;  3H1I E;  3EQQ A;  3VMH D;  2DE5 A;  2NUK A;  3TGU E;  4U3F E;  2YFJ A;  2DE6 D;  4HM3 A;  4P1B H;  4NB9 A;  4HM4 A;  1UUV A;  1NTZ E;  4NBB A;  4H44 D;  4AIV A;  2CKF A;  1SQB E;  2HMJ A;  1P84 E;  1Q90 C;  2E74 D;  3H1K E;  4QUP A;  5CXM A;  1BE3 E;  2NWF A;  2YFI A;  1Z03 A;  1UUW A;  5KLV E;  4NBC D;  1RFS A;  2HMK A;  1NTK E;  2QJP C;  2B1X A;  3GTS A;  2BMO A;  2A06 E;  1O7H A;  5AEU A;  2GBX A;  2NVF A;  3CX5 E;  4NBH A;  4NBG D;  3GKE A;  4HM8 A;  1G8K B;  1WQL A;  3AZC A;  3C0D A;  4HJL A;  3CXH E;  2HMM A;  3L71 E;  1VF5 D;  5KKZ C;  4NBA A;  2ZYL A;  3VMG D;  1KB9 E;  3GTE A;  3H1H E;  1ULJ A;  1O7P A;  1Z01 A;  1EZV E;  1G8J B;  2QPZ A;  1O7M A;  4PV1 D;  2NVE A;  3VCA A;  2B24 A;  2BMQ A;  2DE5 D;  5HL4 A;  2Q3W A;  4NB8 D;  2QJY C;  4NBD D;  1RIE A;  3GB4 A;  3CWB E;  3N0Q A;  2JZA A;  4NB9 D;  4OGQ D;  3VMI A;  4NBB D;  3GCE A;  2DE7 A;  1KYO E;  2BCC E;  2YFL A;  4NBF A;  1L0L E;  4NBE D;  4QDC A;  4EMJ B;  3GL2 A;  1O7N A;  1ULI A;  2HML A;  4QUQ A;  3DQY A;  4HM5 A;  4QDD A;  2HMO A;  3H1L E;  2GBW A;  4AAY B;  4H13 D;  3H1J E;  2I7F A;  1PP9 E;  2JO6 A;  2NUM A;  1SQQ E;  2YIU C;  1SQX E;  3L72 E;  4NBH D;  4P1C H;  1SJG A;  1O7W A;  1JM1 A;  1NYK A;  4QDF A;  4NBA D;  2HMN A;  2YVJ B;  1WW9 A;  1NU1 E;  3VMG A;  4QDF B;  3VMH A;  3L70 E;  2NVG A;  3GL0 A;  2DE6 A;  1SQV E;  2XSH A;  2E4P A;  2IBZ E;  3GCF A;  2D2C D;  1O7G A;  3VMI D;  2DE7 D;  3FOU A;  2XR8 A;  4HM1 A;  4NB8 A;  1EG9 A;  3L73 E;  4NBD A;  2BMR A;  3D89 A;  4HM2 A;  4NBF D;  2XRX A;  4NBC A;  4HM0 A;  4QCK A;  1Z02 A;  3L75 E;  2E4Q A;  3GKQ A;  4PD4 E;  3BCC E;  4NBE A;  2E75 D; 
#chains in the Genus database with same CATH homology
 1SQP E;  5KLI C;  2QJK C;  3GZY A;  4NBG A;  5BOK A;  4HKV A;  4HM7 A;  3GOB A;  4QUR A;  3L74 E;  1NTM E;  1PPJ E;  2FYU E;  3GZX A;  1L0N E;  2FYN C;  1VM9 A;  1VCK A;  4H0L D;  1FQT A;  1BCC E;  2XSO A;  1NDO A;  4HM6 A;  3VCP A;  2E76 D;  2ZT9 D;  1ZRT E;  5AEW A;  3EN1 A;  3H1I E;  3EQQ A;  3VMH D;  2DE5 A;  2NUK A;  3TGU E;  4U3F E;  2YFJ A;  2DE6 D;  4HM3 A;  4P1B H;  4NB9 A;  4HM4 A;  1UUV A;  1NTZ E;  4NBB A;  4H44 D;  4AIV A;  2CKF A;  1SQB E;  2HMJ A;  1P84 E;  1Q90 C;  2E74 D;  3H1K E;  4QUP A;  5CXM A;  1BE3 E;  2NWF A;  2YFI A;  1Z03 A;  1UUW A;  5KLV E;  4NBC D;  1RFS A;  2HMK A;  1NTK E;  2QJP C;  2B1X A;  3GTS A;  2BMO A;  2A06 E;  1O7H A;  5AEU A;  2GBX A;  2NVF A;  3CX5 E;  4NBH A;  4NBG D;  3GKE A;  4HM8 A;  1G8K B;  1WQL A;  3AZC A;  3C0D A;  4HJL A;  3CXH E;  2HMM A;  3L71 E;  1VF5 D;  5KKZ C;  4NBA A;  2ZYL A;  3VMG D;  1KB9 E;  3GTE A;  3H1H E;  1ULJ A;  1O7P A;  1Z01 A;  1EZV E;  1G8J B;  2QPZ A;  1O7M A;  4PV1 D;  2NVE A;  3VCA A;  2B24 A;  2BMQ A;  2DE5 D;  5HL4 A;  2Q3W A;  4NB8 D;  2QJY C;  4NBD D;  1RIE A;  3GB4 A;  3CWB E;  3N0Q A;  2JZA A;  4NB9 D;  4OGQ D;  3VMI A;  4NBB D;  3GCE A;  2DE7 A;  1KYO E;  2BCC E;  2YFL A;  4NBF A;  1L0L E;  4NBE D;  4QDC A;  4EMJ B;  3GL2 A;  1O7N A;  1ULI A;  2HML A;  4QUQ A;  3DQY A;  4HM5 A;  4QDD A;  2HMO A;  3H1L E;  2GBW A;  4AAY B;  4H13 D;  3H1J E;  2I7F A;  1PP9 E;  2JO6 A;  2NUM A;  1SQQ E;  2YIU C;  1SQX E;  3L72 E;  4NBH D;  4P1C H;  1SJG A;  1O7W A;  1JM1 A;  1NYK A;  4QDF A;  4NBA D;  2HMN A;  2YVJ B;  1WW9 A;  1NU1 E;  3VMG A;  4QDF B;  3VMH A;  3L70 E;  2NVG A;  3GL0 A;  2DE6 A;  1SQV E;  2XSH A;  2E4P A;  2IBZ E;  3GCF A;  2D2C D;  1O7G A;  3VMI D;  2DE7 D;  3FOU A;  2XR8 A;  4HM1 A;  4NB8 A;  1EG9 A;  3L73 E;  4NBD A;  2BMR A;  3D89 A;  4HM2 A;  4NBF D;  2XRX A;  4NBC A;  4HM0 A;  4QCK A;  1Z02 A;  3L75 E;  2E4Q A;  3GKQ A;  4PD4 E;  3BCC E;  4NBE A;  2E75 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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