2HMMA

Crystal structure of naphthalene 1,2-dioxygenase bound to anthracene
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
446
structure length
446
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
pubmed doi rcsb
molecule keywords Naphthalene 1,2-dioxygenase alpha subunit
source organism Pseudomonas sp.
molecule tags Oxidoreductase
total genus 159
structure length 446
sequence length 446
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 2hmmA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 2hmmA01
2GBWA 3C0DA 2E4QA 1ULJA 1O7HA 2E4PA 4P1BH 5BOKA 2DE5D 4H13D 4NBAD 3GZYA 2XRXA 2HMJA 3GOBA 4HJLA 5KLIC 4PD4E 2ZYLA 3GB4A 2NUMA 2YFIA 3GCEA 3VMHD 2HMKA 4PV1D 1RFSA 3H1IE 4NBCD 1PPJE 3L70E 1WQLA 2DE7D 2B24A 3DQYA 2NVGA 4NBGD 1Z03A 3CXHE 2DE6D 1EZVE 4NBHD 1NTME 2A06E 3D89A 3EQQA 2FYNC 2NWFA 2QJPC 4QDFB 1WW9A 2NVEA 5KKZC 4H44D 4QCKA 1Z02A 1EG9A 4NBFA 3GL0A 1O7MA 1PP9E 2NUKA 2XR8A 1NU1E 2QPZA 3GKQA 4HM3A 1Q90C 5AEUA 2HMNA 2YFJA 1SQVE 4HM7A 4NBDA 3H1JE 3L71E 4HM4A 4QURA 1G8KB 1L0LE 3VMGA 4P1CH 2BMQA 2DE5A 4HM8A 4NBAA 3GCFA 2I7FA 3VCAA 1O7GA 1SJGA 4U3FE 5HL4A 3VMIA 4NB9D 1ZRTE 2CKFA 1SQXE 4QUPA 3TGUE 2XSHA 1VF5D 4AIVA 2BMRA 3VCPA 1L0NE 3GTSA 3L74E 4QDDA 4NBHA 5AEWA 3CWBE 2QJKC 4H0LD 3H1HE 2GBXA 4QDFA 3AZCA 4NBEA 2E76D 2E75D 4QUQA 1O7NA 4NB8A 1RIEA 1UUWA 4NBFD 1SQBE 4NBBA 1KB9E 2HMMA 2JZAA 5KLVE 2BCCE 2ZT9D 4NBDD 1JM1A 1BCCE 1VM9A 2QJYC 2HMOA 1KYOE 2YVJB 3VMHA 3GTEA 1G8JB 3EN1A 3VMGD 4NBCA 1FQTA 4HM6A 1P84E 4OGQD 2DE7A 3BCCE 2YFLA 4NBGA 2JO6A 3GL2A 2YIUC 2DE6A 4HM1A 3N0QA 3FOUA 1NDOA 1NTZE 1NTKE 1O7WA 1SQQE 3GZXA 4HM0A 3CX5E 1VCKA 3VMID 1Z01A 4NB9A 5CXMA 4HM5A 2BMOA 3H1LE 1SQPE 2B1XA 4QDCA 2NVFA 3GKEA 3L75E 1ULIA 1UUVA 2Q3WA 4AAYB 2XSOA 4EMJB 2IBZE 1NYKA 1O7PA 4HM2A 1BE3E 2FYUE 2D2CD 2E74D 4HKVA 4NBED 4NB8D 3L73E 3H1KE 2HMLA 3L72E 4NBBD
chains in the Genus database with same CATH superfamily
2GBWA 3C0DA 2E4QA 1ULJA 1O7HA 2E4PA 4P1BH 5BOKA 2DE5D 4H13D 4NBAD 3GZYA 2XRXA 2HMJA 3GOBA 4HJLA 5KLIC 4PD4E 2ZYLA 3GB4A 2NUMA 2YFIA 3GCEA 3VMHD 2HMKA 4PV1D 1RFSA 3H1IE 4NBCD 1PPJE 3L70E 1WQLA 2DE7D 2B24A 3DQYA 2NVGA 4NBGD 1Z03A 3CXHE 2DE6D 1EZVE 4NBHD 1NTME 2A06E 3D89A 3EQQA 2FYNC 2NWFA 2QJPC 4QDFB 1WW9A 2NVEA 5KKZC 4H44D 4QCKA 1Z02A 1EG9A 4NBFA 3GL0A 1O7MA 1PP9E 2NUKA 2XR8A 1NU1E 2QPZA 3GKQA 4HM3A 1Q90C 5AEUA 2HMNA 2YFJA 1SQVE 4HM7A 4NBDA 3H1JE 3L71E 4HM4A 4QURA 1G8KB 1L0LE 3VMGA 4P1CH 2BMQA 2DE5A 4HM8A 4NBAA 3GCFA 2I7FA 3VCAA 1O7GA 1SJGA 4U3FE 5HL4A 3VMIA 4NB9D 1ZRTE 2CKFA 1SQXE 4QUPA 3TGUE 2XSHA 1VF5D 4AIVA 2BMRA 3VCPA 1L0NE 3GTSA 3L74E 4QDDA 4NBHA 5AEWA 3CWBE 2QJKC 4H0LD 3H1HE 2GBXA 4QDFA 3AZCA 4NBEA 2E76D 2E75D 4QUQA 1O7NA 4NB8A 1RIEA 1UUWA 4NBFD 1SQBE 4NBBA 1KB9E 2HMMA 2JZAA 5KLVE 2BCCE 2ZT9D 4NBDD 1JM1A 1BCCE 1VM9A 2QJYC 2HMOA 1KYOE 2YVJB 3VMHA 3GTEA 1G8JB 3EN1A 3VMGD 4NBCA 1FQTA 4HM6A 1P84E 4OGQD 2DE7A 3BCCE 2YFLA 4NBGA 2JO6A 3GL2A 2YIUC 2DE6A 4HM1A 3N0QA 3FOUA 1NDOA 1NTZE 1NTKE 1O7WA 1SQQE 3GZXA 4HM0A 3CX5E 1VCKA 3VMID 1Z01A 4NB9A 5CXMA 4HM5A 2BMOA 3H1LE 1SQPE 2B1XA 4QDCA 2NVFA 3GKEA 3L75E 1ULIA 1UUVA 2Q3WA 4AAYB 2XSOA 4EMJB 2IBZE 1NYKA 1O7PA 4HM2A 1BE3E 2FYUE 2D2CD 2E74D 4HKVA 4NBED 4NB8D 3L73E 3H1KE 2HMLA 3L72E 4NBBD
chains in the Genus database with same CATH topology
2GBWA 3C0DA 2E4QA 1ULJA 1O7HA 2E4PA 4P1BH 5BOKA 2DE5D 4H13D 4NBAD 3GZYA 2XRXA 2HMJA 3GOBA 4HJLA 5KLIC 4PD4E 2ZYLA 3GB4A 2NUMA 2YFIA 3GCEA 3VMHD 2HMKA 4PV1D 1RFSA 3H1IE 4NBCD 1PPJE 3L70E 1WQLA 2DE7D 2B24A 3DQYA 2NVGA 4NBGD 1Z03A 3CXHE 2DE6D 1EZVE 4NBHD 1NTME 2A06E 3D89A 3EQQA 2FYNC 2NWFA 2QJPC 4QDFB 1WW9A 2NVEA 5KKZC 4H44D 4QCKA 1Z02A 1EG9A 4NBFA 3GL0A 1O7MA 1PP9E 2NUKA 2XR8A 1NU1E 2QPZA 3GKQA 4HM3A 1Q90C 5AEUA 2HMNA 2YFJA 1SQVE 4HM7A 4NBDA 3H1JE 3L71E 4HM4A 4QURA 1G8KB 1L0LE 3VMGA 4P1CH 2BMQA 2DE5A 4HM8A 4NBAA 3GCFA 2I7FA 3VCAA 1O7GA 1SJGA 4U3FE 5HL4A 3VMIA 4NB9D 1ZRTE 2CKFA 1SQXE 4QUPA 3TGUE 2XSHA 1VF5D 4AIVA 2BMRA 3VCPA 1L0NE 3GTSA 3L74E 4QDDA 4NBHA 5AEWA 3CWBE 2QJKC 4H0LD 3H1HE 2GBXA 4QDFA 3AZCA 4NBEA 2E76D 2E75D 4QUQA 1O7NA 4NB8A 1RIEA 1UUWA 4NBFD 1SQBE 4NBBA 1KB9E 2HMMA 2JZAA 5KLVE 2BCCE 2ZT9D 4NBDD 1JM1A 1BCCE 1VM9A 2QJYC 2HMOA 1KYOE 2YVJB 3VMHA 3GTEA 1G8JB 3EN1A 3VMGD 4NBCA 1FQTA 4HM6A 1P84E 4OGQD 2DE7A 3BCCE 2YFLA 4NBGA 2JO6A 3GL2A 2YIUC 2DE6A 4HM1A 3N0QA 3FOUA 1NDOA 1NTZE 1NTKE 1O7WA 1SQQE 3GZXA 4HM0A 3CX5E 1VCKA 3VMID 1Z01A 4NB9A 5CXMA 4HM5A 2BMOA 3H1LE 1SQPE 2B1XA 4QDCA 2NVFA 3GKEA 3L75E 1ULIA 1UUVA 2Q3WA 4AAYB 2XSOA 4EMJB 2IBZE 1NYKA 1O7PA 4HM2A 1BE3E 2FYUE 2D2CD 2E74D 4HKVA 4NBED 4NB8D 3L73E 3H1KE 2HMLA 3L72E 4NBBD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GBW A;  3C0D A;  2E4Q A;  1ULJ A;  1O7H A;  2E4P A;  4P1B H;  5BOK A;  2DE5 D;  4H13 D;  4NBA D;  3GZY A;  2XRX A;  2HMJ A;  3GOB A;  4HJL A;  5KLI C;  4PD4 E;  2ZYL A;  3GB4 A;  2NUM A;  2YFI A;  3GCE A;  3VMH D;  2HMK A;  4PV1 D;  1RFS A;  3H1I E;  4NBC D;  1PPJ E;  3L70 E;  1WQL A;  2DE7 D;  2B24 A;  3DQY A;  2NVG A;  4NBG D;  1Z03 A;  3CXH E;  2DE6 D;  1EZV E;  4NBH D;  1NTM E;  2A06 E;  3D89 A;  3EQQ A;  2FYN C;  2NWF A;  2QJP C;  4QDF B;  1WW9 A;  2NVE A;  5KKZ C;  4H44 D;  4QCK A;  1Z02 A;  1EG9 A;  4NBF A;  3GL0 A;  1O7M A;  1PP9 E;  2NUK A;  2XR8 A;  1NU1 E;  2QPZ A;  3GKQ A;  4HM3 A;  1Q90 C;  5AEU A;  2HMN A;  2YFJ A;  1SQV E;  4HM7 A;  4NBD A;  3H1J E;  3L71 E;  4HM4 A;  4QUR A;  1G8K B;  1L0L E;  3VMG A;  4P1C H;  2BMQ A;  2DE5 A;  4HM8 A;  4NBA A;  3GCF A;  2I7F A;  3VCA A;  1O7G A;  1SJG A;  4U3F E;  5HL4 A;  3VMI A;  4NB9 D;  1ZRT E;  2CKF A;  1SQX E;  4QUP A;  3TGU E;  2XSH A;  1VF5 D;  4AIV A;  2BMR A;  3VCP A;  1L0N E;  3GTS A;  3L74 E;  4QDD A;  4NBH A;  5AEW A;  3CWB E;  2QJK C;  4H0L D;  3H1H E;  2GBX A;  4QDF A;  3AZC A;  4NBE A;  2E76 D;  2E75 D;  4QUQ A;  1O7N A;  4NB8 A;  1RIE A;  1UUW A;  4NBF D;  1SQB E;  4NBB A;  1KB9 E;  2HMM A;  2JZA A;  5KLV E;  2BCC E;  2ZT9 D;  4NBD D;  1JM1 A;  1BCC E;  1VM9 A;  2QJY C;  2HMO A;  1KYO E;  2YVJ B;  3VMH A;  3GTE A;  1G8J B;  3EN1 A;  3VMG D;  4NBC A;  1FQT A;  4HM6 A;  1P84 E;  4OGQ D;  2DE7 A;  3BCC E;  2YFL A;  4NBG A;  2JO6 A;  3GL2 A;  2YIU C;  2DE6 A;  4HM1 A;  3N0Q A;  3FOU A;  1NDO A;  1NTZ E;  1NTK E;  1O7W A;  1SQQ E;  3GZX A;  4HM0 A;  3CX5 E;  1VCK A;  3VMI D;  1Z01 A;  4NB9 A;  5CXM A;  4HM5 A;  2BMO A;  3H1L E;  1SQP E;  2B1X A;  4QDC A;  2NVF A;  3GKE A;  3L75 E;  1ULI A;  1UUV A;  2Q3W A;  4AAY B;  2XSO A;  4EMJ B;  2IBZ E;  1NYK A;  1O7P A;  4HM2 A;  1BE3 E;  2FYU E;  2D2C D;  2E74 D;  4HKV A;  4NBE D;  4NB8 D;  3L73 E;  3H1K E;  2HML A;  3L72 E;  4NBB D; 
#chains in the Genus database with same CATH topology
 2GBW A;  3C0D A;  2E4Q A;  1ULJ A;  1O7H A;  2E4P A;  4P1B H;  5BOK A;  2DE5 D;  4H13 D;  4NBA D;  3GZY A;  2XRX A;  2HMJ A;  3GOB A;  4HJL A;  5KLI C;  4PD4 E;  2ZYL A;  3GB4 A;  2NUM A;  2YFI A;  3GCE A;  3VMH D;  2HMK A;  4PV1 D;  1RFS A;  3H1I E;  4NBC D;  1PPJ E;  3L70 E;  1WQL A;  2DE7 D;  2B24 A;  3DQY A;  2NVG A;  4NBG D;  1Z03 A;  3CXH E;  2DE6 D;  1EZV E;  4NBH D;  1NTM E;  2A06 E;  3D89 A;  3EQQ A;  2FYN C;  2NWF A;  2QJP C;  4QDF B;  1WW9 A;  2NVE A;  5KKZ C;  4H44 D;  4QCK A;  1Z02 A;  1EG9 A;  4NBF A;  3GL0 A;  1O7M A;  1PP9 E;  2NUK A;  2XR8 A;  1NU1 E;  2QPZ A;  3GKQ A;  4HM3 A;  1Q90 C;  5AEU A;  2HMN A;  2YFJ A;  1SQV E;  4HM7 A;  4NBD A;  3H1J E;  3L71 E;  4HM4 A;  4QUR A;  1G8K B;  1L0L E;  3VMG A;  4P1C H;  2BMQ A;  2DE5 A;  4HM8 A;  4NBA A;  3GCF A;  2I7F A;  3VCA A;  1O7G A;  1SJG A;  4U3F E;  5HL4 A;  3VMI A;  4NB9 D;  1ZRT E;  2CKF A;  1SQX E;  4QUP A;  3TGU E;  2XSH A;  1VF5 D;  4AIV A;  2BMR A;  3VCP A;  1L0N E;  3GTS A;  3L74 E;  4QDD A;  4NBH A;  5AEW A;  3CWB E;  2QJK C;  4H0L D;  3H1H E;  2GBX A;  4QDF A;  3AZC A;  4NBE A;  2E76 D;  2E75 D;  4QUQ A;  1O7N A;  4NB8 A;  1RIE A;  1UUW A;  4NBF D;  1SQB E;  4NBB A;  1KB9 E;  2HMM A;  2JZA A;  5KLV E;  2BCC E;  2ZT9 D;  4NBD D;  1JM1 A;  1BCC E;  1VM9 A;  2QJY C;  2HMO A;  1KYO E;  2YVJ B;  3VMH A;  3GTE A;  1G8J B;  3EN1 A;  3VMG D;  4NBC A;  1FQT A;  4HM6 A;  1P84 E;  4OGQ D;  2DE7 A;  3BCC E;  2YFL A;  4NBG A;  2JO6 A;  3GL2 A;  2YIU C;  2DE6 A;  4HM1 A;  3N0Q A;  3FOU A;  1NDO A;  1NTZ E;  1NTK E;  1O7W A;  1SQQ E;  3GZX A;  4HM0 A;  3CX5 E;  1VCK A;  3VMI D;  1Z01 A;  4NB9 A;  5CXM A;  4HM5 A;  2BMO A;  3H1L E;  1SQP E;  2B1X A;  4QDC A;  2NVF A;  3GKE A;  3L75 E;  1ULI A;  1UUV A;  2Q3W A;  4AAY B;  2XSO A;  4EMJ B;  2IBZ E;  1NYK A;  1O7P A;  4HM2 A;  1BE3 E;  2FYU E;  2D2C D;  2E74 D;  4HKV A;  4NBE D;  4NB8 D;  3L73 E;  3H1K E;  2HML A;  3L72 E;  4NBB D; 
#chains in the Genus database with same CATH homology
 2GBW A;  3C0D A;  2E4Q A;  1ULJ A;  1O7H A;  2E4P A;  4P1B H;  5BOK A;  2DE5 D;  4H13 D;  4NBA D;  3GZY A;  2XRX A;  2HMJ A;  3GOB A;  4HJL A;  5KLI C;  4PD4 E;  2ZYL A;  3GB4 A;  2NUM A;  2YFI A;  3GCE A;  3VMH D;  2HMK A;  4PV1 D;  1RFS A;  3H1I E;  4NBC D;  1PPJ E;  3L70 E;  1WQL A;  2DE7 D;  2B24 A;  3DQY A;  2NVG A;  4NBG D;  1Z03 A;  3CXH E;  2DE6 D;  1EZV E;  4NBH D;  1NTM E;  2A06 E;  3D89 A;  3EQQ A;  2FYN C;  2NWF A;  2QJP C;  4QDF B;  1WW9 A;  2NVE A;  5KKZ C;  4H44 D;  4QCK A;  1Z02 A;  1EG9 A;  4NBF A;  3GL0 A;  1O7M A;  1PP9 E;  2NUK A;  2XR8 A;  1NU1 E;  2QPZ A;  3GKQ A;  4HM3 A;  1Q90 C;  5AEU A;  2HMN A;  2YFJ A;  1SQV E;  4HM7 A;  4NBD A;  3H1J E;  3L71 E;  4HM4 A;  4QUR A;  1G8K B;  1L0L E;  3VMG A;  4P1C H;  2BMQ A;  2DE5 A;  4HM8 A;  4NBA A;  3GCF A;  2I7F A;  3VCA A;  1O7G A;  1SJG A;  4U3F E;  5HL4 A;  3VMI A;  4NB9 D;  1ZRT E;  2CKF A;  1SQX E;  4QUP A;  3TGU E;  2XSH A;  1VF5 D;  4AIV A;  2BMR A;  3VCP A;  1L0N E;  3GTS A;  3L74 E;  4QDD A;  4NBH A;  5AEW A;  3CWB E;  2QJK C;  4H0L D;  3H1H E;  2GBX A;  4QDF A;  3AZC A;  4NBE A;  2E76 D;  2E75 D;  4QUQ A;  1O7N A;  4NB8 A;  1RIE A;  1UUW A;  4NBF D;  1SQB E;  4NBB A;  1KB9 E;  2HMM A;  2JZA A;  5KLV E;  2BCC E;  2ZT9 D;  4NBD D;  1JM1 A;  1BCC E;  1VM9 A;  2QJY C;  2HMO A;  1KYO E;  2YVJ B;  3VMH A;  3GTE A;  1G8J B;  3EN1 A;  3VMG D;  4NBC A;  1FQT A;  4HM6 A;  1P84 E;  4OGQ D;  2DE7 A;  3BCC E;  2YFL A;  4NBG A;  2JO6 A;  3GL2 A;  2YIU C;  2DE6 A;  4HM1 A;  3N0Q A;  3FOU A;  1NDO A;  1NTZ E;  1NTK E;  1O7W A;  1SQQ E;  3GZX A;  4HM0 A;  3CX5 E;  1VCK A;  3VMI D;  1Z01 A;  4NB9 A;  5CXM A;  4HM5 A;  2BMO A;  3H1L E;  1SQP E;  2B1X A;  4QDC A;  2NVF A;  3GKE A;  3L75 E;  1ULI A;  1UUV A;  2Q3W A;  4AAY B;  2XSO A;  4EMJ B;  2IBZ E;  1NYK A;  1O7P A;  4HM2 A;  1BE3 E;  2FYU E;  2D2C D;  2E74 D;  4HKV A;  4NBE D;  4NB8 D;  3L73 E;  3H1K E;  2HML A;  3L72 E;  4NBB D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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