2HTDA

Crystal structure of a putative pyridoxamine 5'-phosphate oxidase (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
121
structure length
121
Chain Sequence
MKKLNTNKLTEEQVNLFKNNLVYLATVDADGNPQVGPKGSMTVLDPSHLQYLEKTKGEAYENIKRGSKVALVAADVPSHTAVRVLATAEVHEDDDYAKKVLAKTEFPNAFVVNLNIEEVFA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Predicted flavin-nucleotide-binding protein from COG3576 fam
publication title Crystal structure of Predicted flavin-nucleotide-binding protein from COG3576 family structurally related to pyridoxine 5'-phosphate oxidase (ZP_00387536.1) from Lactobacillus delbrueckii bulgaricus ATCC BAA-365 at 1.60 A resolution
rcsb
source organism Lactobacillus delbrueckii subsp. bulgaricus
total genus 27
structure length 121
sequence length 121
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2htdA00
4ZKYA 1TY9A 4HX6A 2NR4A 4HMSA 3R5RA 4XHYA 3VY2A 3EC6A 1I0RA 1G79A 2FHQA 3ZOCA 2HQ7A 4F07A 3RH7A 5CHOA 2GJGA 5ESCA 3FKHA 4R82A 3A6QA 3U0IA 2ARZA 2Q9KA 1RZ1A 3BPKA 1W3QA 2X1KA 3H96A 4HMVA 3ZOEA 2E83A 4YWNA 2QEAA 4L82A 2IG6A 5BNCA 3FGEA 2D37A 4HMWA 1VL7A 2I51A 3NFWA 1G77A 3U34A 1XXOA 3K86A 3TGVA 1RZ0A 3K88A 4HMXA 4XJ2A 5CHEC 1W3PA 3A6RA 2R0XA 2IABA 3ZOGA 3R5ZA 2ED4A 2RE7A 2D5MA 3K87A 4HMTA 2PTFA 4IRAA 2HTIA 3SWJA 1YLNA 3E4VA 2FG9A 2OL5A 1NRGA 3R5PA 2ECRA 1WLIA 3HY8A 3KYGA 2ASFA 2IMLA 1WV4A 1W3RA 3AWHA 1W9AA 4QVBA 3A20A 3DMBA 1WLKA 2D36A 2ECUA 3VYAA 3VY5A 2I02A 3IN6A 3PFTA 1USCA 2R6VA 1JNWA 3DNHA 2QCKA 1G78A 1USFA 3KYFA 1YOAA 3U5WA 5JABA 1FLMA 1WGBA 1XHNA 1AXJA 2X1JA 4N7RC 2HHZA 3ZOHA 1I0SA 1EJEA 4Z85A 2AQ6A 4YBNA 1W3OA 1CI0A 3HMZA 3GASA 3R5LA 3CB0A 4Y9IA 3BNKA 3AMFA 1Y30A 3U35A 3R5WA 2HQ9A 3R5YA 1RFEA 2VPAA 2D38A 2FURA 2OU5A 3F7EA 4HMUA 2A2JA 2RDEA 3CP3A 1DNLA 3DB0A 3ZOFA 1T9MA 3ZODA 3B5MA 3BA3A 2HTDA 1G76A
chains in the Genus database with same CATH superfamily
4ZKYA 1TY9A 4HX6A 2NR4A 4HMSA 3R5RA 4XHYA 3VY2A 3EC6A 1I0RA 1G79A 2FHQA 3ZOCA 2HQ7A 4F07A 3RH7A 2P5ZX 5CHOA 2GJGA 5ESCA 3FKHA 4R82A 3EAAA 3A6QA 3U0IA 2ARZA 2Q9KA 1RZ1A 3BPKA 1W3QA 2X1KA 3H96A 4HMVA 3ZOEA 2E83A 4YWNA 2QEAA 4L82A 4HKHA 2IG6A 5BNCA 3FGEA 2D37A 4HMWA 1VL7A 2I51A 3NFWA 1G77A 3U34A 1XXOA 3V4HA 3K86A 3TGVA 1RZ0A 3K88A 4HMXA 4XJ2A 5CHEC 1W3PA 3A6RA 1Y12A 2R0XA 2IABA 3ZOGA 3R5ZA 2ED4A 2RE7A 4UHVA 2D5MA 3K87A 4HMTA 2PTFA 4IRAA 2HTIA 3SWJA 1YLNA 3E4VA 4TV4A 2FG9A 2OL5A 1NRGA 3R5PA 2ECRA 1WLIA 3HY8A 3KYGA 4W64A 2ASFA 2IMLA 1WV4A 1W3RA 3AWHA 2GUJA 1W9AA 4QVBA 3A20A 3DMBA 1WLKA 2K4QA 2D36A 2ECUA 3VYAA 3VY5A 2I02A 3IN6A 2L1TA 3PFTA 1USCA 2R6VA 1JNWA 3DNHA 2QCKA 1G78A 1USFA 3KYFA 1YOAA 3U5WA 5JABA 1FLMA 1WGBA 1XHNA 1AXJA 2X1JA 3HE1A 4N7RC 2HHZA 3ZOHA 1I0SA 1EJEA 4Z85A 2AQ6A 4YBNA 1W3OA 1CI0A 3HMZA 3GASA 3R5LA 3CB0A 4Y9IA 3BNKA 3AMFA 1Y30A 3U35A 3R5WA 2HQ9A 3R5YA 1RFEA 2VPAA 2D38A 2FURA 2OU5A 3F7EA 4HMUA 4MTKA 2A2JA 2RDEA 3CP3A 1DNLA 3DB0A 3ZOFA 1T9MA 3ZODA 3B5MA 3BA3A 2HTDA 1G76A
chains in the Genus database with same CATH topology
4ZKYA 1TY9A 4HX6A 2NR4A 4HMSA 3R5RA 4XHYA 3VY2A 3EC6A 1I0RA 1G79A 2FHQA 3ZOCA 2HQ7A 4F07A 3RH7A 5CHOA 2GJGA 5ESCA 3FKHA 4R82A 3A6QA 3U0IA 2ARZA 2Q9KA 1RZ1A 3BPKA 1W3QA 2X1KA 3H96A 4HMVA 3ZOEA 2E83A 4YWNA 2QEAA 4L82A 2IG6A 5BNCA 3FGEA 2D37A 4HMWA 1VL7A 2I51A 3NFWA 1G77A 3U34A 1XXOA 3K86A 3TGVA 1RZ0A 3K88A 4HMXA 4XJ2A 5CHEC 1W3PA 3A6RA 2R0XA 2IABA 3ZOGA 3R5ZA 2ED4A 2RE7A 2D5MA 3K87A 4HMTA 2PTFA 4IRAA 2HTIA 3SWJA 1YLNA 3E4VA 2FG9A 2OL5A 1NRGA 3R5PA 2ECRA 1WLIA 3HY8A 3KYGA 2ASFA 2IMLA 1WV4A 1W3RA 3AWHA 1W9AA 4QVBA 3A20A 3DMBA 1WLKA 2D36A 2ECUA 3VYAA 3VY5A 2I02A 3IN6A 3PFTA 1USCA 2R6VA 1JNWA 3DNHA 2QCKA 1G78A 1USFA 3KYFA 1YOAA 3U5WA 5JABA 1FLMA 1WGBA 1XHNA 1AXJA 2X1JA 4N7RC 2HHZA 3ZOHA 1I0SA 1EJEA 4Z85A 2AQ6A 4YBNA 1W3OA 1CI0A 3HMZA 3GASA 3R5LA 3CB0A 4Y9IA 3BNKA 3AMFA 1Y30A 3U35A 3R5WA 2HQ9A 3R5YA 1RFEA 2VPAA 2D38A 2FURA 2OU5A 3F7EA 4HMUA 2A2JA 2RDEA 3CP3A 1DNLA 3DB0A 3ZOFA 1T9MA 3ZODA 3B5MA 3BA3A 2HTDA 1G76A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZKY A;  1TY9 A;  4HX6 A;  2NR4 A;  4HMS A;  3R5R A;  4XHY A;  3VY2 A;  3EC6 A;  1I0R A;  1G79 A;  2FHQ A;  3ZOC A;  2HQ7 A;  4F07 A;  3RH7 A;  5CHO A;  2GJG A;  5ESC A;  3FKH A;  4R82 A;  3A6Q A;  3U0I A;  2ARZ A;  2Q9K A;  1RZ1 A;  3BPK A;  1W3Q A;  2X1K A;  3H96 A;  4HMV A;  3ZOE A;  2E83 A;  4YWN A;  2QEA A;  4L82 A;  2IG6 A;  5BNC A;  3FGE A;  2D37 A;  4HMW A;  1VL7 A;  2I51 A;  3NFW A;  1G77 A;  3U34 A;  1XXO A;  3K86 A;  3TGV A;  1RZ0 A;  3K88 A;  4HMX A;  4XJ2 A;  5CHE C;  1W3P A;  3A6R A;  2R0X A;  2IAB A;  3ZOG A;  3R5Z A;  2ED4 A;  2RE7 A;  2D5M A;  3K87 A;  4HMT A;  2PTF A;  4IRA A;  2HTI A;  3SWJ A;  1YLN A;  3E4V A;  2FG9 A;  2OL5 A;  1NRG A;  3R5P A;  2ECR A;  1WLI A;  3HY8 A;  3KYG A;  2ASF A;  2IML A;  1WV4 A;  1W3R A;  3AWH A;  1W9A A;  4QVB A;  3A20 A;  3DMB A;  1WLK A;  2D36 A;  2ECU A;  3VYA A;  3VY5 A;  2I02 A;  3IN6 A;  3PFT A;  1USC A;  2R6V A;  1JNW A;  3DNH A;  2QCK A;  1G78 A;  1USF A;  3KYF A;  1YOA A;  3U5W A;  5JAB A;  1FLM A;  1WGB A;  1XHN A;  1AXJ A;  2X1J A;  4N7R C;  2HHZ A;  3ZOH A;  1I0S A;  1EJE A;  4Z85 A;  2AQ6 A;  4YBN A;  1W3O A;  1CI0 A;  3HMZ A;  3GAS A;  3R5L A;  3CB0 A;  4Y9I A;  3BNK A;  3AMF A;  1Y30 A;  3U35 A;  3R5W A;  2HQ9 A;  3R5Y A;  1RFE A;  2VPA A;  2D38 A;  2FUR A;  2OU5 A;  3F7E A;  4HMU A;  2A2J A;  2RDE A;  3CP3 A;  1DNL A;  3DB0 A;  3ZOF A;  1T9M A;  3ZOD A;  3B5M A;  3BA3 A;  2HTD A;  1G76 A; 
#chains in the Genus database with same CATH topology
 4ZKY A;  1TY9 A;  4HX6 A;  2NR4 A;  4HMS A;  3R5R A;  4XHY A;  3VY2 A;  3EC6 A;  1I0R A;  1G79 A;  2FHQ A;  3ZOC A;  2HQ7 A;  4F07 A;  3RH7 A;  2P5Z X;  5CHO A;  2GJG A;  5ESC A;  3FKH A;  4R82 A;  3EAA A;  3A6Q A;  3U0I A;  2ARZ A;  2Q9K A;  1RZ1 A;  3BPK A;  1W3Q A;  2X1K A;  3H96 A;  4HMV A;  3ZOE A;  2E83 A;  4YWN A;  2QEA A;  4L82 A;  4HKH A;  2IG6 A;  5BNC A;  3FGE A;  2D37 A;  4HMW A;  1VL7 A;  2I51 A;  3NFW A;  1G77 A;  3U34 A;  1XXO A;  3V4H A;  3K86 A;  3TGV A;  1RZ0 A;  3K88 A;  4HMX A;  4XJ2 A;  5CHE C;  1W3P A;  3A6R A;  1Y12 A;  2R0X A;  2IAB A;  3ZOG A;  3R5Z A;  2ED4 A;  2RE7 A;  4UHV A;  2D5M A;  3K87 A;  4HMT A;  2PTF A;  4IRA A;  2HTI A;  3SWJ A;  1YLN A;  3E4V A;  4TV4 A;  2FG9 A;  2OL5 A;  1NRG A;  3R5P A;  2ECR A;  1WLI A;  3HY8 A;  3KYG A;  4W64 A;  2ASF A;  2IML A;  1WV4 A;  1W3R A;  3AWH A;  2GUJ A;  1W9A A;  4QVB A;  3A20 A;  3DMB A;  1WLK A;  2K4Q A;  2D36 A;  2ECU A;  3VYA A;  3VY5 A;  2I02 A;  3IN6 A;  2L1T A;  3PFT A;  1USC A;  2R6V A;  1JNW A;  3DNH A;  2QCK A;  1G78 A;  1USF A;  3KYF A;  1YOA A;  3U5W A;  5JAB A;  1FLM A;  1WGB A;  1XHN A;  1AXJ A;  2X1J A;  3HE1 A;  4N7R C;  2HHZ A;  3ZOH A;  1I0S A;  1EJE A;  4Z85 A;  2AQ6 A;  4YBN A;  1W3O A;  1CI0 A;  3HMZ A;  3GAS A;  3R5L A;  3CB0 A;  4Y9I A;  3BNK A;  3AMF A;  1Y30 A;  3U35 A;  3R5W A;  2HQ9 A;  3R5Y A;  1RFE A;  2VPA A;  2D38 A;  2FUR A;  2OU5 A;  3F7E A;  4HMU A;  4MTK A;  2A2J A;  2RDE A;  3CP3 A;  1DNL A;  3DB0 A;  3ZOF A;  1T9M A;  3ZOD A;  3B5M A;  3BA3 A;  2HTD A;  1G76 A; 
#chains in the Genus database with same CATH homology
 4ZKY A;  1TY9 A;  4HX6 A;  2NR4 A;  4HMS A;  3R5R A;  4XHY A;  3VY2 A;  3EC6 A;  1I0R A;  1G79 A;  2FHQ A;  3ZOC A;  2HQ7 A;  4F07 A;  3RH7 A;  5CHO A;  2GJG A;  5ESC A;  3FKH A;  4R82 A;  3A6Q A;  3U0I A;  2ARZ A;  2Q9K A;  1RZ1 A;  3BPK A;  1W3Q A;  2X1K A;  3H96 A;  4HMV A;  3ZOE A;  2E83 A;  4YWN A;  2QEA A;  4L82 A;  2IG6 A;  5BNC A;  3FGE A;  2D37 A;  4HMW A;  1VL7 A;  2I51 A;  3NFW A;  1G77 A;  3U34 A;  1XXO A;  3K86 A;  3TGV A;  1RZ0 A;  3K88 A;  4HMX A;  4XJ2 A;  5CHE C;  1W3P A;  3A6R A;  2R0X A;  2IAB A;  3ZOG A;  3R5Z A;  2ED4 A;  2RE7 A;  2D5M A;  3K87 A;  4HMT A;  2PTF A;  4IRA A;  2HTI A;  3SWJ A;  1YLN A;  3E4V A;  2FG9 A;  2OL5 A;  1NRG A;  3R5P A;  2ECR A;  1WLI A;  3HY8 A;  3KYG A;  2ASF A;  2IML A;  1WV4 A;  1W3R A;  3AWH A;  1W9A A;  4QVB A;  3A20 A;  3DMB A;  1WLK A;  2D36 A;  2ECU A;  3VYA A;  3VY5 A;  2I02 A;  3IN6 A;  3PFT A;  1USC A;  2R6V A;  1JNW A;  3DNH A;  2QCK A;  1G78 A;  1USF A;  3KYF A;  1YOA A;  3U5W A;  5JAB A;  1FLM A;  1WGB A;  1XHN A;  1AXJ A;  2X1J A;  4N7R C;  2HHZ A;  3ZOH A;  1I0S A;  1EJE A;  4Z85 A;  2AQ6 A;  4YBN A;  1W3O A;  1CI0 A;  3HMZ A;  3GAS A;  3R5L A;  3CB0 A;  4Y9I A;  3BNK A;  3AMF A;  1Y30 A;  3U35 A;  3R5W A;  2HQ9 A;  3R5Y A;  1RFE A;  2VPA A;  2D38 A;  2FUR A;  2OU5 A;  3F7E A;  4HMU A;  2A2J A;  2RDE A;  3CP3 A;  1DNL A;  3DB0 A;  3ZOF A;  1T9M A;  3ZOD A;  3B5M A;  3BA3 A;  2HTD A;  1G76 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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