2HUQA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGMHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2huqA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2huqA01
4E16A 2E8HA 2ED5A 2E8RA 2DSHA 2ELDA 2EHCA 2PB4A 2EKAA 2ELEA 1V9AA 2E7RA 2HUQA 3FQ6A 2BB3A 2EEQA 2EGBA 2EJKA 5HW4A 2PB5A 2PCIA 2PB6A 2EL1A 2P5CA 2DXWA 3HH1A 2EGSA 1WYZA 2EL3A 2ENIA 2ZVBA 2E8SA 2E15A 3NDCA 2YBOA 2EH4A 2DSGA 2PCHA 2E16A 2EMUA 2P2XA 3ND1A 2E07A 2P9DA 2CBFA 2E8QA 3FFYA 2DV5A 2OWKA 2EK4A 2EJJA 1VHVA 2DXXA 2EL2A 1PJQA 2ED3A 2QBUA 2E08A 2Z6RA 1VA0A 2PCMA 2DEKA 2EJZA 1S4DA 2E17A 2P6DA 2P6KA 2PCGA 2OWVA 3I4TA 2E4NA 2P6IA 2ZVCA 2DV7A 3KWPA 1PJSA 2OWFA 2EMRA 2DV4A 1CBFA 2E4RA 2HUVA 1WDEA 2EL0A 2EHLA 2EGLA 2HUXA 2OWGA 2EN5A 1WNGA 2DXVA 2EK7A 1VCEA 2PCAA 2PCKA 2EH5A 2EK2A 3NEIA 2NPNA 2YBQA 2P5FA 2EK3A 2DV3A 2E0NA 1PJTA 3NUTA 2OWUA 1VE2A 2HR8A 2HUTA 2EH2A 2P6LA 2E0KA 2DSIA
chains in the Genus database with same CATH superfamily
4H4DA 3UTCA 4E16A 3KELA 2E8HA 4EB3A 2ED5A 2E8RA 2DSHA 2ELDA 2EHCA 3UV7A 2PB4A 2EKAA 2ELEA 1V9AA 2E7RA 2HUQA 3FQ6A 2BB3A 2EEQA 2EGBA 2EJKA 5HW4A 2PB5A 3KEMA 2PCIA 2PB6A 2EL1A 2P5CA 2DXWA 3ZGLA 3HH1A 2EGSA 4H4CA 4MV5A 3KE9A 1WYZA 2EL3A 2ENIA 2ZVBA 2E8SA 3UV3A 3KEFA 2E15A 3NDCA 2YBOA 2EH4A 2DSGA 2PCHA 2E16A 2EMUA 3F7TA 2P2XA 3ND1A 2E07A 2P9DA 2CBFA 2E8QA 3FFYA 2DV5A 3DNFA 2OWKA 2EK4A 2EJJA 1VHVA 3SZLA 2DXXA 2EL2A 1PJQA 2ED3A 2QBUA 2E08A 4N7BA 2Z6RA 1VA0A 2PCMA 2DEKA 2EJZA 1S4DA 2E17A 2P6DA 2P6KA 2PCGA 2OWVA 3I4TA 2E4NA 2P6IA 2ZVCA 2DV7A 3KWPA 4H4EA 1PJSA 4MUXA 4MUYA 2OWFA 2EMRA 2DV4A 1CBFA 2E4RA 2HUVA 3UWMA 1WDEA 2EL0A 2EHLA 2EGLA 2HUXA 3TIXB 2OWGA 2EN5A 3UTDA 2KYYA 3ZGNA 1WNGA 2DXVA 2EK7A 3LMMA 3URKA 1VCEA 2PCAA 2PCKA 3T0GA 2EH5A 2EK2A 3NEIA 2NPNA 3SZOA 2YBQA 4MV0A 2P5FA 3UV6A 2EK3A 2DV3A 2E0NA 1PJTA 3NUTA 2OWUA 3KE8A 3T0FA 1VE2A 2HR8A 2HUTA 2EH2A 2P6LA 2E0KA 3SZUA 2DSIA
chains in the Genus database with same CATH topology
4H4DA 3UTCA 4E16A 3KELA 2E8HA 4EB3A 2ED5A 2E8RA 2DSHA 2ELDA 2EHCA 3UV7A 2PB4A 2EKAA 2ELEA 1V9AA 2E7RA 2HUQA 3FQ6A 2BB3A 2EEQA 2EGBA 2EJKA 5HW4A 2PB5A 3KEMA 2PCIA 2PB6A 2EL1A 2P5CA 2DXWA 3ZGLA 3HH1A 2EGSA 4H4CA 4MV5A 3KE9A 1WYZA 2EL3A 2ENIA 2ZVBA 2E8SA 3UV3A 3KEFA 2E15A 3NDCA 2YBOA 2EH4A 2DSGA 2PCHA 2E16A 2EMUA 3F7TA 2P2XA 3ND1A 2E07A 2P9DA 2CBFA 2E8QA 3FFYA 2DV5A 3DNFA 2OWKA 2EK4A 2EJJA 1VHVA 3SZLA 2DXXA 2EL2A 1PJQA 2ED3A 2QBUA 2E08A 4N7BA 2Z6RA 1VA0A 2PCMA 2DEKA 2EJZA 1S4DA 2E17A 2P6DA 2P6KA 2PCGA 2OWVA 3I4TA 2E4NA 2P6IA 2ZVCA 2DV7A 3KWPA 4H4EA 1PJSA 4MUXA 4MUYA 2OWFA 2EMRA 2DV4A 1CBFA 2E4RA 2HUVA 3UWMA 1WDEA 2EL0A 2EHLA 2EGLA 2HUXA 3TIXB 2OWGA 2EN5A 3UTDA 2KYYA 3ZGNA 1WNGA 2DXVA 2EK7A 3LMMA 3URKA 1VCEA 2PCAA 2PCKA 3T0GA 2EH5A 2EK2A 3NEIA 2NPNA 3SZOA 2YBQA 4MV0A 2P5FA 3UV6A 2EK3A 2DV3A 2E0NA 1PJTA 3NUTA 2OWUA 3KE8A 3T0FA 1VE2A 2HR8A 2HUTA 2EH2A 2P6LA 2E0KA 3SZUA 2DSIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E16 A;  2E8H A;  2ED5 A;  2E8R A;  2DSH A;  2ELD A;  2EHC A;  2PB4 A;  2EKA A;  2ELE A;  1V9A A;  2E7R A;  2HUQ A;  3FQ6 A;  2BB3 A;  2EEQ A;  2EGB A;  2EJK A;  5HW4 A;  2PB5 A;  2PCI A;  2PB6 A;  2EL1 A;  2P5C A;  2DXW A;  3HH1 A;  2EGS A;  1WYZ A;  2EL3 A;  2ENI A;  2ZVB A;  2E8S A;  2E15 A;  3NDC A;  2YBO A;  2EH4 A;  2DSG A;  2PCH A;  2E16 A;  2EMU A;  2P2X A;  3ND1 A;  2E07 A;  2P9D A;  2CBF A;  2E8Q A;  3FFY A;  2DV5 A;  2OWK A;  2EK4 A;  2EJJ A;  1VHV A;  2DXX A;  2EL2 A;  1PJQ A;  2ED3 A;  2QBU A;  2E08 A;  2Z6R A;  1VA0 A;  2PCM A;  2DEK A;  2EJZ A;  1S4D A;  2E17 A;  2P6D A;  2P6K A;  2PCG A;  2OWV A;  3I4T A;  2E4N A;  2P6I A;  2ZVC A;  2DV7 A;  3KWP A;  1PJS A;  2OWF A;  2EMR A;  2DV4 A;  1CBF A;  2E4R A;  2HUV A;  1WDE A;  2EL0 A;  2EHL A;  2EGL A;  2HUX A;  2OWG A;  2EN5 A;  1WNG A;  2DXV A;  2EK7 A;  1VCE A;  2PCA A;  2PCK A;  2EH5 A;  2EK2 A;  3NEI A;  2NPN A;  2YBQ A;  2P5F A;  2EK3 A;  2DV3 A;  2E0N A;  1PJT A;  3NUT A;  2OWU A;  1VE2 A;  2HR8 A;  2HUT A;  2EH2 A;  2P6L A;  2E0K A;  2DSI A; 
#chains in the Genus database with same CATH topology
 4H4D A;  3UTC A;  4E16 A;  3KEL A;  2E8H A;  4EB3 A;  2ED5 A;  2E8R A;  2DSH A;  2ELD A;  2EHC A;  3UV7 A;  2PB4 A;  2EKA A;  2ELE A;  1V9A A;  2E7R A;  2HUQ A;  3FQ6 A;  2BB3 A;  2EEQ A;  2EGB A;  2EJK A;  5HW4 A;  2PB5 A;  3KEM A;  2PCI A;  2PB6 A;  2EL1 A;  2P5C A;  2DXW A;  3ZGL A;  3HH1 A;  2EGS A;  4H4C A;  4MV5 A;  3KE9 A;  1WYZ A;  2EL3 A;  2ENI A;  2ZVB A;  2E8S A;  3UV3 A;  3KEF A;  2E15 A;  3NDC A;  2YBO A;  2EH4 A;  2DSG A;  2PCH A;  2E16 A;  2EMU A;  3F7T A;  2P2X A;  3ND1 A;  2E07 A;  2P9D A;  2CBF A;  2E8Q A;  3FFY A;  2DV5 A;  3DNF A;  2OWK A;  2EK4 A;  2EJJ A;  1VHV A;  3SZL A;  2DXX A;  2EL2 A;  1PJQ A;  2ED3 A;  2QBU A;  2E08 A;  4N7B A;  2Z6R A;  1VA0 A;  2PCM A;  2DEK A;  2EJZ A;  1S4D A;  2E17 A;  2P6D A;  2P6K A;  2PCG A;  2OWV A;  3I4T A;  2E4N A;  2P6I A;  2ZVC A;  2DV7 A;  3KWP A;  4H4E A;  1PJS A;  4MUX A;  4MUY A;  2OWF A;  2EMR A;  2DV4 A;  1CBF A;  2E4R A;  2HUV A;  3UWM A;  1WDE A;  2EL0 A;  2EHL A;  2EGL A;  2HUX A;  3TIX B;  2OWG A;  2EN5 A;  3UTD A;  2KYY A;  3ZGN A;  1WNG A;  2DXV A;  2EK7 A;  3LMM A;  3URK A;  1VCE A;  2PCA A;  2PCK A;  3T0G A;  2EH5 A;  2EK2 A;  3NEI A;  2NPN A;  3SZO A;  2YBQ A;  4MV0 A;  2P5F A;  3UV6 A;  2EK3 A;  2DV3 A;  2E0N A;  1PJT A;  3NUT A;  2OWU A;  3KE8 A;  3T0F A;  1VE2 A;  2HR8 A;  2HUT A;  2EH2 A;  2P6L A;  2E0K A;  3SZU A;  2DSI A; 
#chains in the Genus database with same CATH homology
 4H4D A;  3UTC A;  4E16 A;  3KEL A;  2E8H A;  4EB3 A;  2ED5 A;  2E8R A;  2DSH A;  2ELD A;  2EHC A;  3UV7 A;  2PB4 A;  2EKA A;  2ELE A;  1V9A A;  2E7R A;  2HUQ A;  3FQ6 A;  2BB3 A;  2EEQ A;  2EGB A;  2EJK A;  5HW4 A;  2PB5 A;  3KEM A;  2PCI A;  2PB6 A;  2EL1 A;  2P5C A;  2DXW A;  3ZGL A;  3HH1 A;  2EGS A;  4H4C A;  4MV5 A;  3KE9 A;  1WYZ A;  2EL3 A;  2ENI A;  2ZVB A;  2E8S A;  3UV3 A;  3KEF A;  2E15 A;  3NDC A;  2YBO A;  2EH4 A;  2DSG A;  2PCH A;  2E16 A;  2EMU A;  3F7T A;  2P2X A;  3ND1 A;  2E07 A;  2P9D A;  2CBF A;  2E8Q A;  3FFY A;  2DV5 A;  3DNF A;  2OWK A;  2EK4 A;  2EJJ A;  1VHV A;  3SZL A;  2DXX A;  2EL2 A;  1PJQ A;  2ED3 A;  2QBU A;  2E08 A;  4N7B A;  2Z6R A;  1VA0 A;  2PCM A;  2DEK A;  2EJZ A;  1S4D A;  2E17 A;  2P6D A;  2P6K A;  2PCG A;  2OWV A;  3I4T A;  2E4N A;  2P6I A;  2ZVC A;  2DV7 A;  3KWP A;  4H4E A;  1PJS A;  4MUX A;  4MUY A;  2OWF A;  2EMR A;  2DV4 A;  1CBF A;  2E4R A;  2HUV A;  3UWM A;  1WDE A;  2EL0 A;  2EHL A;  2EGL A;  2HUX A;  3TIX B;  2OWG A;  2EN5 A;  3UTD A;  2KYY A;  3ZGN A;  1WNG A;  2DXV A;  2EK7 A;  3LMM A;  3URK A;  1VCE A;  2PCA A;  2PCK A;  3T0G A;  2EH5 A;  2EK2 A;  3NEI A;  2NPN A;  3SZO A;  2YBQ A;  4MV0 A;  2P5F A;  3UV6 A;  2EK3 A;  2DV3 A;  2E0N A;  1PJT A;  3NUT A;  2OWU A;  3KE8 A;  3T0F A;  1VE2 A;  2HR8 A;  2HUT A;  2EH2 A;  2P6L A;  2E0K A;  3SZU A;  2DSI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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