2HUTA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
262
structure length
262
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVMPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 81
structure length 262
sequence length 262
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2hutA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2hutA01
2PCKA 2OWVA 2BB3A 2E07A 2EK3A 2Z6RA 2E4NA 2ELEA 1S4DA 3NUTA 2EGSA 2EJKA 2EEQA 3ND1A 2PCMA 2HUXA 2ENIA 1VCEA 2EK4A 2E8RA 2OWFA 3I4TA 2DV4A 2ED5A 2OWKA 2EK2A 2OWGA 1V9AA 1PJSA 2E08A 3HH1A 2PCGA 2DSGA 2PB4A 2EN5A 2P5FA 2ELDA 2EK7A 2EL2A 2ZVCA 1WYZA 2EH5A 2E7RA 3FQ6A 2EGLA 2EL1A 1VHVA 2DSHA 2DSIA 2DV5A 2P6KA 2EL0A 2QBUA 2HUVA 2EMRA 2EL3A 2P6DA 2DXVA 1PJQA 2E17A 2EMUA 2YBQA 2EHLA 2E8SA 2P2XA 2PB6A 2E16A 1WDEA 2E0KA 2E15A 2EKAA 5HW4A 2P6IA 2ED3A 2E4RA 2OWUA 2EH2A 2E8QA 2E8HA 2HUTA 2YBOA 2DXWA 2HUQA 1WNGA 2EGBA 2EH4A 2DV3A 2P9DA 4E16A 2DV7A 2EJJA 3NEIA 2PCAA 2P5CA 2E0NA 2EJZA 1VE2A 3KWPA 2DXXA 2CBFA 1VA0A 3FFYA 2PCIA 2P6LA 1CBFA 2DEKA 2ZVBA 1PJTA 2HR8A 2PB5A 3NDCA 2NPNA 2EHCA 2PCHA
chains in the Genus database with same CATH superfamily
2PCKA 2OWVA 2BB3A 2E07A 2EK3A 2Z6RA 2E4NA 2ELEA 1S4DA 3NUTA 3UV7A 2EGSA 2EJKA 2EEQA 3KEMA 4MUYA 3ND1A 2PCMA 3KELA 2HUXA 2ENIA 1VCEA 2EK4A 4H4CA 2E8RA 2OWFA 3I4TA 2DV4A 2ED5A 3KE8A 2OWKA 2EK2A 3UV3A 2OWGA 1V9AA 1PJSA 2E08A 3HH1A 2PCGA 2DSGA 2PB4A 2EN5A 2P5FA 4MV5A 2ELDA 3T0FA 2KYYA 2EK7A 2EL2A 2ZVCA 1WYZA 2EH5A 2E7RA 3FQ6A 2EGLA 2EL1A 1VHVA 2DSHA 2DSIA 3ZGLA 2DV5A 2P6KA 2EL0A 2QBUA 4H4DA 3F7TA 2HUVA 2EMRA 2EL3A 2P6DA 3ZGNA 2DXVA 3UWMA 1PJQA 2E17A 3LMMA 2EMUA 3UTCA 2YBQA 3SZUA 2EHLA 2E8SA 2P2XA 2PB6A 2E16A 1WDEA 3SZOA 2E0KA 2E15A 2EKAA 4MV0A 3T0GA 5HW4A 2P6IA 2ED3A 2E4RA 2OWUA 3KE9A 2EH2A 2E8QA 3KEFA 2E8HA 2HUTA 2YBOA 4MUXA 2DXWA 4N7BA 2HUQA 1WNGA 2EGBA 2EH4A 3DNFA 2DV3A 2P9DA 4E16A 2DV7A 2EJJA 4H4EA 3NEIA 3SZLA 2PCAA 2P5CA 2E0NA 2EJZA 1VE2A 3KWPA 2DXXA 2CBFA 1VA0A 3FFYA 3URKA 2PCIA 2P6LA 1CBFA 2DEKA 2ZVBA 3UV6A 1PJTA 2HR8A 4EB3A 2PB5A 3UTDA 3NDCA 2NPNA 3TIXB 2EHCA 2PCHA
chains in the Genus database with same CATH topology
2PCKA 2OWVA 2BB3A 2E07A 2EK3A 2Z6RA 2E4NA 2ELEA 1S4DA 3NUTA 3UV7A 2EGSA 2EJKA 2EEQA 3KEMA 4MUYA 3ND1A 2PCMA 3KELA 2HUXA 2ENIA 1VCEA 2EK4A 4H4CA 2E8RA 2OWFA 3I4TA 2DV4A 2ED5A 3KE8A 2OWKA 2EK2A 3UV3A 2OWGA 1V9AA 1PJSA 2E08A 3HH1A 2PCGA 2DSGA 2PB4A 2EN5A 2P5FA 4MV5A 2ELDA 3T0FA 2KYYA 2EK7A 2EL2A 2ZVCA 1WYZA 2EH5A 2E7RA 3FQ6A 2EGLA 2EL1A 1VHVA 2DSHA 2DSIA 3ZGLA 2DV5A 2P6KA 2EL0A 2QBUA 4H4DA 3F7TA 2HUVA 2EMRA 2EL3A 2P6DA 3ZGNA 2DXVA 3UWMA 1PJQA 2E17A 3LMMA 2EMUA 3UTCA 2YBQA 3SZUA 2EHLA 2E8SA 2P2XA 2PB6A 2E16A 1WDEA 3SZOA 2E0KA 2E15A 2EKAA 4MV0A 3T0GA 5HW4A 2P6IA 2ED3A 2E4RA 2OWUA 3KE9A 2EH2A 2E8QA 3KEFA 2E8HA 2HUTA 2YBOA 4MUXA 2DXWA 4N7BA 2HUQA 1WNGA 2EGBA 2EH4A 3DNFA 2DV3A 2P9DA 4E16A 2DV7A 2EJJA 4H4EA 3NEIA 3SZLA 2PCAA 2P5CA 2E0NA 2EJZA 1VE2A 3KWPA 2DXXA 2CBFA 1VA0A 3FFYA 3URKA 2PCIA 2P6LA 1CBFA 2DEKA 2ZVBA 3UV6A 1PJTA 2HR8A 4EB3A 2PB5A 3UTDA 3NDCA 2NPNA 3TIXB 2EHCA 2PCHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCK A;  2OWV A;  2BB3 A;  2E07 A;  2EK3 A;  2Z6R A;  2E4N A;  2ELE A;  1S4D A;  3NUT A;  2EGS A;  2EJK A;  2EEQ A;  3ND1 A;  2PCM A;  2HUX A;  2ENI A;  1VCE A;  2EK4 A;  2E8R A;  2OWF A;  3I4T A;  2DV4 A;  2ED5 A;  2OWK A;  2EK2 A;  2OWG A;  1V9A A;  1PJS A;  2E08 A;  3HH1 A;  2PCG A;  2DSG A;  2PB4 A;  2EN5 A;  2P5F A;  2ELD A;  2EK7 A;  2EL2 A;  2ZVC A;  1WYZ A;  2EH5 A;  2E7R A;  3FQ6 A;  2EGL A;  2EL1 A;  1VHV A;  2DSH A;  2DSI A;  2DV5 A;  2P6K A;  2EL0 A;  2QBU A;  2HUV A;  2EMR A;  2EL3 A;  2P6D A;  2DXV A;  1PJQ A;  2E17 A;  2EMU A;  2YBQ A;  2EHL A;  2E8S A;  2P2X A;  2PB6 A;  2E16 A;  1WDE A;  2E0K A;  2E15 A;  2EKA A;  5HW4 A;  2P6I A;  2ED3 A;  2E4R A;  2OWU A;  2EH2 A;  2E8Q A;  2E8H A;  2HUT A;  2YBO A;  2DXW A;  2HUQ A;  1WNG A;  2EGB A;  2EH4 A;  2DV3 A;  2P9D A;  4E16 A;  2DV7 A;  2EJJ A;  3NEI A;  2PCA A;  2P5C A;  2E0N A;  2EJZ A;  1VE2 A;  3KWP A;  2DXX A;  2CBF A;  1VA0 A;  3FFY A;  2PCI A;  2P6L A;  1CBF A;  2DEK A;  2ZVB A;  1PJT A;  2HR8 A;  2PB5 A;  3NDC A;  2NPN A;  2EHC A;  2PCH A; 
#chains in the Genus database with same CATH topology
 2PCK A;  2OWV A;  2BB3 A;  2E07 A;  2EK3 A;  2Z6R A;  2E4N A;  2ELE A;  1S4D A;  3NUT A;  3UV7 A;  2EGS A;  2EJK A;  2EEQ A;  3KEM A;  4MUY A;  3ND1 A;  2PCM A;  3KEL A;  2HUX A;  2ENI A;  1VCE A;  2EK4 A;  4H4C A;  2E8R A;  2OWF A;  3I4T A;  2DV4 A;  2ED5 A;  3KE8 A;  2OWK A;  2EK2 A;  3UV3 A;  2OWG A;  1V9A A;  1PJS A;  2E08 A;  3HH1 A;  2PCG A;  2DSG A;  2PB4 A;  2EN5 A;  2P5F A;  4MV5 A;  2ELD A;  3T0F A;  2KYY A;  2EK7 A;  2EL2 A;  2ZVC A;  1WYZ A;  2EH5 A;  2E7R A;  3FQ6 A;  2EGL A;  2EL1 A;  1VHV A;  2DSH A;  2DSI A;  3ZGL A;  2DV5 A;  2P6K A;  2EL0 A;  2QBU A;  4H4D A;  3F7T A;  2HUV A;  2EMR A;  2EL3 A;  2P6D A;  3ZGN A;  2DXV A;  3UWM A;  1PJQ A;  2E17 A;  3LMM A;  2EMU A;  3UTC A;  2YBQ A;  3SZU A;  2EHL A;  2E8S A;  2P2X A;  2PB6 A;  2E16 A;  1WDE A;  3SZO A;  2E0K A;  2E15 A;  2EKA A;  4MV0 A;  3T0G A;  5HW4 A;  2P6I A;  2ED3 A;  2E4R A;  2OWU A;  3KE9 A;  2EH2 A;  2E8Q A;  3KEF A;  2E8H A;  2HUT A;  2YBO A;  4MUX A;  2DXW A;  4N7B A;  2HUQ A;  1WNG A;  2EGB A;  2EH4 A;  3DNF A;  2DV3 A;  2P9D A;  4E16 A;  2DV7 A;  2EJJ A;  4H4E A;  3NEI A;  3SZL A;  2PCA A;  2P5C A;  2E0N A;  2EJZ A;  1VE2 A;  3KWP A;  2DXX A;  2CBF A;  1VA0 A;  3FFY A;  3URK A;  2PCI A;  2P6L A;  1CBF A;  2DEK A;  2ZVB A;  3UV6 A;  1PJT A;  2HR8 A;  4EB3 A;  2PB5 A;  3UTD A;  3NDC A;  2NPN A;  3TIX B;  2EHC A;  2PCH A; 
#chains in the Genus database with same CATH homology
 2PCK A;  2OWV A;  2BB3 A;  2E07 A;  2EK3 A;  2Z6R A;  2E4N A;  2ELE A;  1S4D A;  3NUT A;  3UV7 A;  2EGS A;  2EJK A;  2EEQ A;  3KEM A;  4MUY A;  3ND1 A;  2PCM A;  3KEL A;  2HUX A;  2ENI A;  1VCE A;  2EK4 A;  4H4C A;  2E8R A;  2OWF A;  3I4T A;  2DV4 A;  2ED5 A;  3KE8 A;  2OWK A;  2EK2 A;  3UV3 A;  2OWG A;  1V9A A;  1PJS A;  2E08 A;  3HH1 A;  2PCG A;  2DSG A;  2PB4 A;  2EN5 A;  2P5F A;  4MV5 A;  2ELD A;  3T0F A;  2KYY A;  2EK7 A;  2EL2 A;  2ZVC A;  1WYZ A;  2EH5 A;  2E7R A;  3FQ6 A;  2EGL A;  2EL1 A;  1VHV A;  2DSH A;  2DSI A;  3ZGL A;  2DV5 A;  2P6K A;  2EL0 A;  2QBU A;  4H4D A;  3F7T A;  2HUV A;  2EMR A;  2EL3 A;  2P6D A;  3ZGN A;  2DXV A;  3UWM A;  1PJQ A;  2E17 A;  3LMM A;  2EMU A;  3UTC A;  2YBQ A;  3SZU A;  2EHL A;  2E8S A;  2P2X A;  2PB6 A;  2E16 A;  1WDE A;  3SZO A;  2E0K A;  2E15 A;  2EKA A;  4MV0 A;  3T0G A;  5HW4 A;  2P6I A;  2ED3 A;  2E4R A;  2OWU A;  3KE9 A;  2EH2 A;  2E8Q A;  3KEF A;  2E8H A;  2HUT A;  2YBO A;  4MUX A;  2DXW A;  4N7B A;  2HUQ A;  1WNG A;  2EGB A;  2EH4 A;  3DNF A;  2DV3 A;  2P9D A;  4E16 A;  2DV7 A;  2EJJ A;  4H4E A;  3NEI A;  3SZL A;  2PCA A;  2P5C A;  2E0N A;  2EJZ A;  1VE2 A;  3KWP A;  2DXX A;  2CBF A;  1VA0 A;  3FFY A;  3URK A;  2PCI A;  2P6L A;  1CBF A;  2DEK A;  2ZVB A;  3UV6 A;  1PJT A;  2HR8 A;  4EB3 A;  2PB5 A;  3UTD A;  3NDC A;  2NPN A;  3TIX B;  2EHC A;  2PCH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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