2HUVA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRMKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 85
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2huvA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2huvA01
2EJKA 2E8QA 1VE2A 2EKAA 2Z6RA 2HUXA 1WNGA 2DV3A 2PB6A 5HW4A 1VA0A 2DXVA 2EH5A 3FQ6A 2DSIA 2P5CA 2ENIA 2EK3A 2PCMA 2P6IA 2E7RA 2EHLA 2HUVA 2ELEA 2EEQA 2HUTA 2EMRA 2DV4A 2E08A 1WYZA 2P9DA 2EMUA 2EH4A 2EJZA 2YBOA 2OWFA 2OWGA 2E15A 2ELDA 2DSGA 2EK7A 1PJSA 2BB3A 2OWVA 2EHCA 2OWKA 2P6KA 2E0KA 2EGBA 2EJJA 2EK4A 2PCHA 2P6LA 2E8RA 2PB4A 2E8HA 2PCAA 2YBQA 2DSHA 2ZVCA 2HUQA 2EK2A 2EGSA 2NPNA 3KWPA 2P6DA 1CBFA 2CBFA 2EL3A 2EH2A 2DV5A 3NDCA 3HH1A 2E4RA 2EL0A 1WDEA 2PCIA 2ZVBA 2DV7A 2E0NA 1PJTA 2E17A 1VCEA 2QBUA 2PCKA 2EN5A 1PJQA 2E8SA 2ED3A 2EGLA 2EL2A 2DXXA 2PB5A 2E4NA 2HR8A 4E16A 2OWUA 2EL1A 2ED5A 2PCGA 2DXWA 2P2XA 3I4TA 2E16A 2P5FA 2E07A 3ND1A 1VHVA 2DEKA 3NEIA 3FFYA 3NUTA 1S4DA 1V9AA
chains in the Genus database with same CATH superfamily
2EJKA 2E8QA 1VE2A 2EKAA 2Z6RA 2HUXA 3SZOA 1WNGA 2DV3A 2PB6A 5HW4A 1VA0A 2DXVA 2EH5A 3FQ6A 2DSIA 2P5CA 4MUYA 2ENIA 2EK3A 2PCMA 2P6IA 3UTCA 2E7RA 2EHLA 3T0FA 2HUVA 2ELEA 2EEQA 4H4CA 3SZLA 2HUTA 2EMRA 3UV3A 2DV4A 2E08A 4MV5A 1WYZA 2P9DA 2EMUA 2EH4A 2EJZA 2YBOA 2OWFA 3KEFA 2OWGA 3TIXB 2E15A 2ELDA 2DSGA 2EK7A 1PJSA 2BB3A 2OWVA 3KE9A 3URKA 4EB3A 2EHCA 2OWKA 2P6KA 2E0KA 2EGBA 3ZGNA 2EJJA 2EK4A 2PCHA 2P6LA 2E8RA 3ZGLA 2PB4A 4H4DA 4N7BA 2E8HA 2PCAA 2YBQA 2DSHA 2ZVCA 2HUQA 2EK2A 2EGSA 2NPNA 3KWPA 1CBFA 2CBFA 2P6DA 2EL3A 2EH2A 2DV5A 3NDCA 3HH1A 2E4RA 2EL0A 3UV7A 4MUXA 1WDEA 2PCIA 2ZVBA 2DV7A 3SZUA 3KEMA 2E0NA 1PJTA 3KE8A 2E17A 1VCEA 2QBUA 2PCKA 2EN5A 4H4EA 3LMMA 1PJQA 2E8SA 3UV6A 2ED3A 2EGLA 2KYYA 2EL2A 3KELA 3UTDA 2DXXA 2PB5A 4MV0A 2E4NA 2HR8A 4E16A 2OWUA 3F7TA 2EL1A 2ED5A 2PCGA 2DXWA 2P2XA 3I4TA 2E16A 2P5FA 2E07A 3UWMA 3ND1A 1VHVA 2DEKA 3NEIA 3FFYA 3DNFA 3NUTA 1S4DA 1V9AA 3T0GA
chains in the Genus database with same CATH topology
2EJKA 2E8QA 1VE2A 2EKAA 2Z6RA 2HUXA 3SZOA 1WNGA 2DV3A 2PB6A 5HW4A 1VA0A 2DXVA 2EH5A 3FQ6A 2DSIA 2P5CA 4MUYA 2ENIA 2EK3A 2PCMA 2P6IA 3UTCA 2E7RA 2EHLA 3T0FA 2HUVA 2ELEA 2EEQA 4H4CA 3SZLA 2HUTA 2EMRA 3UV3A 2DV4A 2E08A 4MV5A 1WYZA 2P9DA 2EMUA 2EH4A 2EJZA 2YBOA 2OWFA 3KEFA 2OWGA 3TIXB 2E15A 2ELDA 2DSGA 2EK7A 1PJSA 2BB3A 2OWVA 3KE9A 3URKA 4EB3A 2EHCA 2OWKA 2P6KA 2E0KA 2EGBA 3ZGNA 2EJJA 2EK4A 2PCHA 2P6LA 2E8RA 3ZGLA 2PB4A 4H4DA 4N7BA 2E8HA 2PCAA 2YBQA 2DSHA 2ZVCA 2HUQA 2EK2A 2EGSA 2NPNA 3KWPA 1CBFA 2CBFA 2P6DA 2EL3A 2EH2A 2DV5A 3NDCA 3HH1A 2E4RA 2EL0A 3UV7A 4MUXA 1WDEA 2PCIA 2ZVBA 2DV7A 3SZUA 3KEMA 2E0NA 1PJTA 3KE8A 2E17A 1VCEA 2QBUA 2PCKA 2EN5A 4H4EA 3LMMA 1PJQA 2E8SA 3UV6A 2ED3A 2EGLA 2KYYA 2EL2A 3KELA 3UTDA 2DXXA 2PB5A 4MV0A 2E4NA 2HR8A 4E16A 2OWUA 3F7TA 2EL1A 2ED5A 2PCGA 2DXWA 2P2XA 3I4TA 2E16A 2P5FA 2E07A 3UWMA 3ND1A 1VHVA 2DEKA 3NEIA 3FFYA 3DNFA 3NUTA 1S4DA 1V9AA 3T0GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EJK A;  2E8Q A;  1VE2 A;  2EKA A;  2Z6R A;  2HUX A;  1WNG A;  2DV3 A;  2PB6 A;  5HW4 A;  1VA0 A;  2DXV A;  2EH5 A;  3FQ6 A;  2DSI A;  2P5C A;  2ENI A;  2EK3 A;  2PCM A;  2P6I A;  2E7R A;  2EHL A;  2HUV A;  2ELE A;  2EEQ A;  2HUT A;  2EMR A;  2DV4 A;  2E08 A;  1WYZ A;  2P9D A;  2EMU A;  2EH4 A;  2EJZ A;  2YBO A;  2OWF A;  2OWG A;  2E15 A;  2ELD A;  2DSG A;  2EK7 A;  1PJS A;  2BB3 A;  2OWV A;  2EHC A;  2OWK A;  2P6K A;  2E0K A;  2EGB A;  2EJJ A;  2EK4 A;  2PCH A;  2P6L A;  2E8R A;  2PB4 A;  2E8H A;  2PCA A;  2YBQ A;  2DSH A;  2ZVC A;  2HUQ A;  2EK2 A;  2EGS A;  2NPN A;  3KWP A;  2P6D A;  1CBF A;  2CBF A;  2EL3 A;  2EH2 A;  2DV5 A;  3NDC A;  3HH1 A;  2E4R A;  2EL0 A;  1WDE A;  2PCI A;  2ZVB A;  2DV7 A;  2E0N A;  1PJT A;  2E17 A;  1VCE A;  2QBU A;  2PCK A;  2EN5 A;  1PJQ A;  2E8S A;  2ED3 A;  2EGL A;  2EL2 A;  2DXX A;  2PB5 A;  2E4N A;  2HR8 A;  4E16 A;  2OWU A;  2EL1 A;  2ED5 A;  2PCG A;  2DXW A;  2P2X A;  3I4T A;  2E16 A;  2P5F A;  2E07 A;  3ND1 A;  1VHV A;  2DEK A;  3NEI A;  3FFY A;  3NUT A;  1S4D A;  1V9A A; 
#chains in the Genus database with same CATH topology
 2EJK A;  2E8Q A;  1VE2 A;  2EKA A;  2Z6R A;  2HUX A;  3SZO A;  1WNG A;  2DV3 A;  2PB6 A;  5HW4 A;  1VA0 A;  2DXV A;  2EH5 A;  3FQ6 A;  2DSI A;  2P5C A;  4MUY A;  2ENI A;  2EK3 A;  2PCM A;  2P6I A;  3UTC A;  2E7R A;  2EHL A;  3T0F A;  2HUV A;  2ELE A;  2EEQ A;  4H4C A;  3SZL A;  2HUT A;  2EMR A;  3UV3 A;  2DV4 A;  2E08 A;  4MV5 A;  1WYZ A;  2P9D A;  2EMU A;  2EH4 A;  2EJZ A;  2YBO A;  2OWF A;  3KEF A;  2OWG A;  3TIX B;  2E15 A;  2ELD A;  2DSG A;  2EK7 A;  1PJS A;  2BB3 A;  2OWV A;  3KE9 A;  3URK A;  4EB3 A;  2EHC A;  2OWK A;  2P6K A;  2E0K A;  2EGB A;  3ZGN A;  2EJJ A;  2EK4 A;  2PCH A;  2P6L A;  2E8R A;  3ZGL A;  2PB4 A;  4H4D A;  4N7B A;  2E8H A;  2PCA A;  2YBQ A;  2DSH A;  2ZVC A;  2HUQ A;  2EK2 A;  2EGS A;  2NPN A;  3KWP A;  1CBF A;  2CBF A;  2P6D A;  2EL3 A;  2EH2 A;  2DV5 A;  3NDC A;  3HH1 A;  2E4R A;  2EL0 A;  3UV7 A;  4MUX A;  1WDE A;  2PCI A;  2ZVB A;  2DV7 A;  3SZU A;  3KEM A;  2E0N A;  1PJT A;  3KE8 A;  2E17 A;  1VCE A;  2QBU A;  2PCK A;  2EN5 A;  4H4E A;  3LMM A;  1PJQ A;  2E8S A;  3UV6 A;  2ED3 A;  2EGL A;  2KYY A;  2EL2 A;  3KEL A;  3UTD A;  2DXX A;  2PB5 A;  4MV0 A;  2E4N A;  2HR8 A;  4E16 A;  2OWU A;  3F7T A;  2EL1 A;  2ED5 A;  2PCG A;  2DXW A;  2P2X A;  3I4T A;  2E16 A;  2P5F A;  2E07 A;  3UWM A;  3ND1 A;  1VHV A;  2DEK A;  3NEI A;  3FFY A;  3DNF A;  3NUT A;  1S4D A;  1V9A A;  3T0G A; 
#chains in the Genus database with same CATH homology
 2EJK A;  2E8Q A;  1VE2 A;  2EKA A;  2Z6R A;  2HUX A;  3SZO A;  1WNG A;  2DV3 A;  2PB6 A;  5HW4 A;  1VA0 A;  2DXV A;  2EH5 A;  3FQ6 A;  2DSI A;  2P5C A;  4MUY A;  2ENI A;  2EK3 A;  2PCM A;  2P6I A;  3UTC A;  2E7R A;  2EHL A;  3T0F A;  2HUV A;  2ELE A;  2EEQ A;  4H4C A;  3SZL A;  2HUT A;  2EMR A;  3UV3 A;  2DV4 A;  2E08 A;  4MV5 A;  1WYZ A;  2P9D A;  2EMU A;  2EH4 A;  2EJZ A;  2YBO A;  2OWF A;  3KEF A;  2OWG A;  3TIX B;  2E15 A;  2ELD A;  2DSG A;  2EK7 A;  1PJS A;  2BB3 A;  2OWV A;  3KE9 A;  3URK A;  4EB3 A;  2EHC A;  2OWK A;  2P6K A;  2E0K A;  2EGB A;  3ZGN A;  2EJJ A;  2EK4 A;  2PCH A;  2P6L A;  2E8R A;  3ZGL A;  2PB4 A;  4H4D A;  4N7B A;  2E8H A;  2PCA A;  2YBQ A;  2DSH A;  2ZVC A;  2HUQ A;  2EK2 A;  2EGS A;  2NPN A;  3KWP A;  1CBF A;  2CBF A;  2P6D A;  2EL3 A;  2EH2 A;  2DV5 A;  3NDC A;  3HH1 A;  2E4R A;  2EL0 A;  3UV7 A;  4MUX A;  1WDE A;  2PCI A;  2ZVB A;  2DV7 A;  3SZU A;  3KEM A;  2E0N A;  1PJT A;  3KE8 A;  2E17 A;  1VCE A;  2QBU A;  2PCK A;  2EN5 A;  4H4E A;  3LMM A;  1PJQ A;  2E8S A;  3UV6 A;  2ED3 A;  2EGL A;  2KYY A;  2EL2 A;  3KEL A;  3UTD A;  2DXX A;  2PB5 A;  4MV0 A;  2E4N A;  2HR8 A;  4E16 A;  2OWU A;  3F7T A;  2EL1 A;  2ED5 A;  2PCG A;  2DXW A;  2P2X A;  3I4T A;  2E16 A;  2P5F A;  2E07 A;  3UWM A;  3ND1 A;  1VHV A;  2DEK A;  3NEI A;  3FFY A;  3DNF A;  3NUT A;  1S4D A;  1V9A A;  3T0G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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