2HUVA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRMKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 85
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2huvA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2huvA01
2PB4A 2DXWA 2EJJA 2PCKA 1CBFA 2EK4A 2DSIA 2DSGA 2ZVBA 2PB5A 2EKAA 2ZVCA 1V9AA 2PCMA 2EK2A 2P6DA 2HUQA 2PCHA 2P9DA 2HUTA 2DV3A 2YBOA 5HW4A 2EN5A 3FFYA 2E8SA 2EH5A 2YBQA 1WNGA 2P5CA 2P2XA 2Z6RA 2EGLA 2E0NA 2E4NA 2PCAA 2ENIA 2HUXA 2PCIA 2E8HA 2EGSA 2OWVA 2PCGA 3ND1A 2ELEA 2DV7A 2DSHA 2BB3A 2EMUA 2EHLA 2HR8A 1PJSA 4E16A 2E07A 2HUVA 2P5FA 2P6KA 2E8RA 1VHVA 1VCEA 2OWGA 3HH1A 2NPNA 2P6IA 2ED3A 2CBFA 2DXXA 3NEIA 2DV5A 1WDEA 2QBUA 2EJZA 2EH4A 2EH2A 2EL2A 3NUTA 2EK3A 2E8QA 2EGBA 3FQ6A 2P6LA 2DV4A 2EMRA 2ED5A 1S4DA 2E15A 3I4TA 2E0KA 2ELDA 1PJTA 2EL0A 1PJQA 2E16A 2EEQA 2E7RA 2OWFA 2OWUA 2DEKA 3KWPA 1WYZA 2EHCA 2EL1A 2EL3A 3NDCA 2EK7A 2OWKA 2E17A 2PB6A 2E4RA 2E08A 2DXVA 1VE2A 2EJKA 1VA0A
chains in the Genus database with same CATH superfamily
2PB4A 2DXWA 2EJJA 2PCKA 1CBFA 2EK4A 3UV6A 2DSIA 2DSGA 2ZVBA 2PB5A 2EKAA 2ZVCA 1V9AA 2PCMA 2EK2A 2P6DA 2HUQA 2PCHA 2P9DA 2HUTA 2DV3A 2YBOA 5HW4A 3T0GA 3TIXB 2EN5A 3FFYA 3SZUA 2E8SA 2EH5A 3UWMA 2YBQA 1WNGA 2P5CA 2P2XA 2Z6RA 4EB3A 2EGLA 2E0NA 2E4NA 2PCAA 2ENIA 3SZLA 4MV0A 2HUXA 2KYYA 2PCIA 2E8HA 2EGSA 3UV3A 2OWVA 2PCGA 3ND1A 2ELEA 2DV7A 2DSHA 2BB3A 2EMUA 2EHLA 2HR8A 1PJSA 4E16A 2E07A 2HUVA 2P5FA 2P6KA 3UV7A 4MUYA 2E8RA 3URKA 4H4DA 3ZGNA 1VHVA 1VCEA 2OWGA 3HH1A 2NPNA 2P6IA 2ED3A 2CBFA 2DXXA 3NEIA 3KEFA 4H4CA 3SZOA 2DV5A 1WDEA 2QBUA 2EJZA 4H4EA 2EH4A 3ZGLA 2EH2A 4MUXA 2EL2A 3DNFA 3UTCA 3NUTA 2EK3A 2E8QA 3F7TA 2EGBA 3FQ6A 2P6LA 2DV4A 3UTDA 2EMRA 2ED5A 3T0FA 1S4DA 2E15A 3I4TA 2E0KA 2ELDA 1PJTA 2EL0A 1PJQA 2E16A 2EEQA 2E7RA 2OWFA 3KELA 2OWUA 2DEKA 3KWPA 1WYZA 2EHCA 3LMMA 3KE8A 4MV5A 3KE9A 2EL1A 2EL3A 3NDCA 2EK7A 2OWKA 4N7BA 2E17A 2PB6A 2E4RA 2E08A 2DXVA 1VE2A 3KEMA 2EJKA 1VA0A
chains in the Genus database with same CATH topology
2PB4A 2DXWA 2EJJA 2PCKA 1CBFA 2EK4A 3UV6A 2DSIA 2DSGA 2ZVBA 2PB5A 2EKAA 2ZVCA 1V9AA 2PCMA 2EK2A 2P6DA 2HUQA 2PCHA 2P9DA 2HUTA 2DV3A 2YBOA 5HW4A 3T0GA 3TIXB 2EN5A 3FFYA 3SZUA 2E8SA 2EH5A 3UWMA 2YBQA 1WNGA 2P5CA 2P2XA 2Z6RA 4EB3A 2EGLA 2E0NA 2E4NA 2PCAA 2ENIA 3SZLA 4MV0A 2HUXA 2KYYA 2PCIA 2E8HA 2EGSA 3UV3A 2OWVA 2PCGA 3ND1A 2ELEA 2DV7A 2DSHA 2BB3A 2EMUA 2EHLA 2HR8A 1PJSA 4E16A 2E07A 2HUVA 2P5FA 2P6KA 3UV7A 4MUYA 2E8RA 3URKA 4H4DA 3ZGNA 1VHVA 1VCEA 2OWGA 3HH1A 2NPNA 2P6IA 2ED3A 2CBFA 2DXXA 3NEIA 3KEFA 4H4CA 3SZOA 2DV5A 1WDEA 2QBUA 2EJZA 4H4EA 2EH4A 3ZGLA 2EH2A 4MUXA 2EL2A 3DNFA 3UTCA 3NUTA 2EK3A 2E8QA 3F7TA 2EGBA 3FQ6A 2P6LA 2DV4A 3UTDA 2EMRA 2ED5A 3T0FA 1S4DA 2E15A 3I4TA 2E0KA 2ELDA 1PJTA 2EL0A 1PJQA 2E16A 2EEQA 2E7RA 2OWFA 3KELA 2OWUA 2DEKA 3KWPA 1WYZA 2EHCA 3LMMA 3KE8A 4MV5A 3KE9A 2EL1A 2EL3A 3NDCA 2EK7A 2OWKA 4N7BA 2E17A 2PB6A 2E4RA 2E08A 2DXVA 1VE2A 3KEMA 2EJKA 1VA0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PB4 A;  2DXW A;  2EJJ A;  2PCK A;  1CBF A;  2EK4 A;  2DSI A;  2DSG A;  2ZVB A;  2PB5 A;  2EKA A;  2ZVC A;  1V9A A;  2PCM A;  2EK2 A;  2P6D A;  2HUQ A;  2PCH A;  2P9D A;  2HUT A;  2DV3 A;  2YBO A;  5HW4 A;  2EN5 A;  3FFY A;  2E8S A;  2EH5 A;  2YBQ A;  1WNG A;  2P5C A;  2P2X A;  2Z6R A;  2EGL A;  2E0N A;  2E4N A;  2PCA A;  2ENI A;  2HUX A;  2PCI A;  2E8H A;  2EGS A;  2OWV A;  2PCG A;  3ND1 A;  2ELE A;  2DV7 A;  2DSH A;  2BB3 A;  2EMU A;  2EHL A;  2HR8 A;  1PJS A;  4E16 A;  2E07 A;  2HUV A;  2P5F A;  2P6K A;  2E8R A;  1VHV A;  1VCE A;  2OWG A;  3HH1 A;  2NPN A;  2P6I A;  2ED3 A;  2CBF A;  2DXX A;  3NEI A;  2DV5 A;  1WDE A;  2QBU A;  2EJZ A;  2EH4 A;  2EH2 A;  2EL2 A;  3NUT A;  2EK3 A;  2E8Q A;  2EGB A;  3FQ6 A;  2P6L A;  2DV4 A;  2EMR A;  2ED5 A;  1S4D A;  2E15 A;  3I4T A;  2E0K A;  2ELD A;  1PJT A;  2EL0 A;  1PJQ A;  2E16 A;  2EEQ A;  2E7R A;  2OWF A;  2OWU A;  2DEK A;  3KWP A;  1WYZ A;  2EHC A;  2EL1 A;  2EL3 A;  3NDC A;  2EK7 A;  2OWK A;  2E17 A;  2PB6 A;  2E4R A;  2E08 A;  2DXV A;  1VE2 A;  2EJK A;  1VA0 A; 
#chains in the Genus database with same CATH topology
 2PB4 A;  2DXW A;  2EJJ A;  2PCK A;  1CBF A;  2EK4 A;  3UV6 A;  2DSI A;  2DSG A;  2ZVB A;  2PB5 A;  2EKA A;  2ZVC A;  1V9A A;  2PCM A;  2EK2 A;  2P6D A;  2HUQ A;  2PCH A;  2P9D A;  2HUT A;  2DV3 A;  2YBO A;  5HW4 A;  3T0G A;  3TIX B;  2EN5 A;  3FFY A;  3SZU A;  2E8S A;  2EH5 A;  3UWM A;  2YBQ A;  1WNG A;  2P5C A;  2P2X A;  2Z6R A;  4EB3 A;  2EGL A;  2E0N A;  2E4N A;  2PCA A;  2ENI A;  3SZL A;  4MV0 A;  2HUX A;  2KYY A;  2PCI A;  2E8H A;  2EGS A;  3UV3 A;  2OWV A;  2PCG A;  3ND1 A;  2ELE A;  2DV7 A;  2DSH A;  2BB3 A;  2EMU A;  2EHL A;  2HR8 A;  1PJS A;  4E16 A;  2E07 A;  2HUV A;  2P5F A;  2P6K A;  3UV7 A;  4MUY A;  2E8R A;  3URK A;  4H4D A;  3ZGN A;  1VHV A;  1VCE A;  2OWG A;  3HH1 A;  2NPN A;  2P6I A;  2ED3 A;  2CBF A;  2DXX A;  3NEI A;  3KEF A;  4H4C A;  3SZO A;  2DV5 A;  1WDE A;  2QBU A;  2EJZ A;  4H4E A;  2EH4 A;  3ZGL A;  2EH2 A;  4MUX A;  2EL2 A;  3DNF A;  3UTC A;  3NUT A;  2EK3 A;  2E8Q A;  3F7T A;  2EGB A;  3FQ6 A;  2P6L A;  2DV4 A;  3UTD A;  2EMR A;  2ED5 A;  3T0F A;  1S4D A;  2E15 A;  3I4T A;  2E0K A;  2ELD A;  1PJT A;  2EL0 A;  1PJQ A;  2E16 A;  2EEQ A;  2E7R A;  2OWF A;  3KEL A;  2OWU A;  2DEK A;  3KWP A;  1WYZ A;  2EHC A;  3LMM A;  3KE8 A;  4MV5 A;  3KE9 A;  2EL1 A;  2EL3 A;  3NDC A;  2EK7 A;  2OWK A;  4N7B A;  2E17 A;  2PB6 A;  2E4R A;  2E08 A;  2DXV A;  1VE2 A;  3KEM A;  2EJK A;  1VA0 A; 
#chains in the Genus database with same CATH homology
 2PB4 A;  2DXW A;  2EJJ A;  2PCK A;  1CBF A;  2EK4 A;  3UV6 A;  2DSI A;  2DSG A;  2ZVB A;  2PB5 A;  2EKA A;  2ZVC A;  1V9A A;  2PCM A;  2EK2 A;  2P6D A;  2HUQ A;  2PCH A;  2P9D A;  2HUT A;  2DV3 A;  2YBO A;  5HW4 A;  3T0G A;  3TIX B;  2EN5 A;  3FFY A;  3SZU A;  2E8S A;  2EH5 A;  3UWM A;  2YBQ A;  1WNG A;  2P5C A;  2P2X A;  2Z6R A;  4EB3 A;  2EGL A;  2E0N A;  2E4N A;  2PCA A;  2ENI A;  3SZL A;  4MV0 A;  2HUX A;  2KYY A;  2PCI A;  2E8H A;  2EGS A;  3UV3 A;  2OWV A;  2PCG A;  3ND1 A;  2ELE A;  2DV7 A;  2DSH A;  2BB3 A;  2EMU A;  2EHL A;  2HR8 A;  1PJS A;  4E16 A;  2E07 A;  2HUV A;  2P5F A;  2P6K A;  3UV7 A;  4MUY A;  2E8R A;  3URK A;  4H4D A;  3ZGN A;  1VHV A;  1VCE A;  2OWG A;  3HH1 A;  2NPN A;  2P6I A;  2ED3 A;  2CBF A;  2DXX A;  3NEI A;  3KEF A;  4H4C A;  3SZO A;  2DV5 A;  1WDE A;  2QBU A;  2EJZ A;  4H4E A;  2EH4 A;  3ZGL A;  2EH2 A;  4MUX A;  2EL2 A;  3DNF A;  3UTC A;  3NUT A;  2EK3 A;  2E8Q A;  3F7T A;  2EGB A;  3FQ6 A;  2P6L A;  2DV4 A;  3UTD A;  2EMR A;  2ED5 A;  3T0F A;  1S4D A;  2E15 A;  3I4T A;  2E0K A;  2ELD A;  1PJT A;  2EL0 A;  1PJQ A;  2E16 A;  2EEQ A;  2E7R A;  2OWF A;  3KEL A;  2OWU A;  2DEK A;  3KWP A;  1WYZ A;  2EHC A;  3LMM A;  3KE8 A;  4MV5 A;  3KE9 A;  2EL1 A;  2EL3 A;  3NDC A;  2EK7 A;  2OWK A;  4N7B A;  2E17 A;  2PB6 A;  2E4R A;  2E08 A;  2DXV A;  1VE2 A;  3KEM A;  2EJK A;  1VA0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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