2HUVA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 85
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
85
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRMKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 85
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2huvA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2huvA01
1PJTA 2EK7A 2OWGA 2E8HA 1VCEA 2EN5A 2EJKA 2E8RA 2EH4A 2ELEA 2EHLA 1CBFA 2E0NA 2DSIA 2PCAA 2DV5A 2HR8A 2OWUA 2PCHA 4E16A 3KWPA 2PCGA 2CBFA 2PCMA 2E17A 2EMRA 2EL2A 2EMUA 2P6KA 2BB3A 2DSGA 1WYZA 1WNGA 2E0KA 2E07A 3HH1A 3NUTA 2EGLA 2PB6A 2EK2A 2OWFA 2DV4A 2PB5A 2Z6RA 3I4TA 2E7RA 1S4DA 2ENIA 2EH5A 3FFYA 2EL0A 2E16A 2DXVA 2EHCA 3FQ6A 2PCKA 2HUVA 2DV7A 1PJQA 2E8SA 2P6LA 2EH2A 2EGSA 1WDEA 2EL3A 2EK3A 2EK4A 2P9DA 3NDCA 2YBQA 2P5CA 2NPNA 2E4RA 2EGBA 2DXXA 5HW4A 2HUXA 2HUQA 2P5FA 2P6IA 2EKAA 2EL1A 1VA0A 2DEKA 1PJSA 1VE2A 2PB4A 2QBUA 3ND1A 2P2XA 2E15A 2P6DA 2YBOA 1V9AA 2PCIA 2DV3A 2E4NA 2EJZA 2OWKA 2ZVBA 2DSHA 1VHVA 2ELDA 2EJJA 2E08A 2OWVA 3NEIA 2ZVCA 2ED5A 2ED3A 2E8QA 2HUTA 2EEQA 2DXWA
chains in the Genus database with same CATH superfamily
1PJTA 2EK7A 2OWGA 2E8HA 1VCEA 2EN5A 2EJKA 4MUXA 2E8RA 2EH4A 4H4CA 3URKA 2ELEA 2EHLA 1CBFA 3DNFA 2E0NA 3SZOA 2DSIA 2PCAA 2DV5A 2HR8A 2OWUA 2PCHA 4E16A 3ZGNA 4MV5A 3KWPA 3UTCA 2PCGA 2CBFA 2PCMA 2E17A 2KYYA 4MUYA 2EMRA 2EL2A 2EMUA 2P6KA 2BB3A 2DSGA 3UWMA 1WYZA 1WNGA 3KEFA 2E0KA 2E07A 3HH1A 3NUTA 2EGLA 2PB6A 3ZGLA 2EK2A 2OWFA 2DV4A 2PB5A 2Z6RA 3I4TA 4MV0A 4H4DA 4EB3A 3UTDA 4H4EA 2E7RA 3LMMA 1S4DA 3KE9A 2ENIA 3UV7A 2EH5A 3UV6A 3KEMA 3FFYA 2EL0A 2E16A 2DXVA 2EHCA 3FQ6A 2PCKA 2HUVA 3SZUA 2DV7A 1PJQA 2E8SA 2P6LA 2EH2A 2EGSA 1WDEA 2EL3A 2EK3A 2EK4A 2P9DA 3NDCA 2YBQA 2P5CA 2NPNA 3TIXB 2E4RA 2EGBA 2DXXA 5HW4A 2HUXA 2HUQA 2P5FA 2P6IA 3F7TA 3KE8A 2EKAA 3SZLA 2EL1A 1VA0A 2DEKA 1PJSA 1VE2A 2PB4A 4N7BA 2QBUA 3ND1A 2P2XA 2E15A 2P6DA 2YBOA 1V9AA 2PCIA 2DV3A 3T0FA 2E4NA 2EJZA 2OWKA 2ZVBA 2DSHA 1VHVA 2ELDA 2EJJA 2E08A 2OWVA 3NEIA 3KELA 3T0GA 2ZVCA 2ED5A 3UV3A 2ED3A 2E8QA 2HUTA 2EEQA 2DXWA
chains in the Genus database with same CATH topology
1PJTA 2EK7A 2OWGA 2E8HA 1VCEA 2EN5A 2EJKA 4MUXA 2E8RA 2EH4A 4H4CA 3URKA 2ELEA 2EHLA 1CBFA 3DNFA 2E0NA 3SZOA 2DSIA 2PCAA 2DV5A 2HR8A 2OWUA 2PCHA 4E16A 3ZGNA 4MV5A 3KWPA 3UTCA 2PCGA 2CBFA 2PCMA 2E17A 2KYYA 4MUYA 2EMRA 2EL2A 2EMUA 2P6KA 2BB3A 2DSGA 3UWMA 1WYZA 1WNGA 3KEFA 2E0KA 2E07A 3HH1A 3NUTA 2EGLA 2PB6A 3ZGLA 2EK2A 2OWFA 2DV4A 2PB5A 2Z6RA 3I4TA 4MV0A 4H4DA 4EB3A 3UTDA 4H4EA 2E7RA 3LMMA 1S4DA 3KE9A 2ENIA 3UV7A 2EH5A 3UV6A 3KEMA 3FFYA 2EL0A 2E16A 2DXVA 2EHCA 3FQ6A 2PCKA 2HUVA 3SZUA 2DV7A 1PJQA 2E8SA 2P6LA 2EH2A 2EGSA 1WDEA 2EL3A 2EK3A 2EK4A 2P9DA 3NDCA 2YBQA 2P5CA 2NPNA 3TIXB 2E4RA 2EGBA 2DXXA 5HW4A 2HUXA 2HUQA 2P5FA 2P6IA 3F7TA 3KE8A 2EKAA 3SZLA 2EL1A 1VA0A 2DEKA 1PJSA 1VE2A 2PB4A 4N7BA 2QBUA 3ND1A 2P2XA 2E15A 2P6DA 2YBOA 1V9AA 2PCIA 2DV3A 3T0FA 2E4NA 2EJZA 2OWKA 2ZVBA 2DSHA 1VHVA 2ELDA 2EJJA 2E08A 2OWVA 3NEIA 3KELA 3T0GA 2ZVCA 2ED5A 3UV3A 2ED3A 2E8QA 2HUTA 2EEQA 2DXWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PJT A;  2EK7 A;  2OWG A;  2E8H A;  1VCE A;  2EN5 A;  2EJK A;  2E8R A;  2EH4 A;  2ELE A;  2EHL A;  1CBF A;  2E0N A;  2DSI A;  2PCA A;  2DV5 A;  2HR8 A;  2OWU A;  2PCH A;  4E16 A;  3KWP A;  2PCG A;  2CBF A;  2PCM A;  2E17 A;  2EMR A;  2EL2 A;  2EMU A;  2P6K A;  2BB3 A;  2DSG A;  1WYZ A;  1WNG A;  2E0K A;  2E07 A;  3HH1 A;  3NUT A;  2EGL A;  2PB6 A;  2EK2 A;  2OWF A;  2DV4 A;  2PB5 A;  2Z6R A;  3I4T A;  2E7R A;  1S4D A;  2ENI A;  2EH5 A;  3FFY A;  2EL0 A;  2E16 A;  2DXV A;  2EHC A;  3FQ6 A;  2PCK A;  2HUV A;  2DV7 A;  1PJQ A;  2E8S A;  2P6L A;  2EH2 A;  2EGS A;  1WDE A;  2EL3 A;  2EK3 A;  2EK4 A;  2P9D A;  3NDC A;  2YBQ A;  2P5C A;  2NPN A;  2E4R A;  2EGB A;  2DXX A;  5HW4 A;  2HUX A;  2HUQ A;  2P5F A;  2P6I A;  2EKA A;  2EL1 A;  1VA0 A;  2DEK A;  1PJS A;  1VE2 A;  2PB4 A;  2QBU A;  3ND1 A;  2P2X A;  2E15 A;  2P6D A;  2YBO A;  1V9A A;  2PCI A;  2DV3 A;  2E4N A;  2EJZ A;  2OWK A;  2ZVB A;  2DSH A;  1VHV A;  2ELD A;  2EJJ A;  2E08 A;  2OWV A;  3NEI A;  2ZVC A;  2ED5 A;  2ED3 A;  2E8Q A;  2HUT A;  2EEQ A;  2DXW A; 
#chains in the Genus database with same CATH topology
 1PJT A;  2EK7 A;  2OWG A;  2E8H A;  1VCE A;  2EN5 A;  2EJK A;  4MUX A;  2E8R A;  2EH4 A;  4H4C A;  3URK A;  2ELE A;  2EHL A;  1CBF A;  3DNF A;  2E0N A;  3SZO A;  2DSI A;  2PCA A;  2DV5 A;  2HR8 A;  2OWU A;  2PCH A;  4E16 A;  3ZGN A;  4MV5 A;  3KWP A;  3UTC A;  2PCG A;  2CBF A;  2PCM A;  2E17 A;  2KYY A;  4MUY A;  2EMR A;  2EL2 A;  2EMU A;  2P6K A;  2BB3 A;  2DSG A;  3UWM A;  1WYZ A;  1WNG A;  3KEF A;  2E0K A;  2E07 A;  3HH1 A;  3NUT A;  2EGL A;  2PB6 A;  3ZGL A;  2EK2 A;  2OWF A;  2DV4 A;  2PB5 A;  2Z6R A;  3I4T A;  4MV0 A;  4H4D A;  4EB3 A;  3UTD A;  4H4E A;  2E7R A;  3LMM A;  1S4D A;  3KE9 A;  2ENI A;  3UV7 A;  2EH5 A;  3UV6 A;  3KEM A;  3FFY A;  2EL0 A;  2E16 A;  2DXV A;  2EHC A;  3FQ6 A;  2PCK A;  2HUV A;  3SZU A;  2DV7 A;  1PJQ A;  2E8S A;  2P6L A;  2EH2 A;  2EGS A;  1WDE A;  2EL3 A;  2EK3 A;  2EK4 A;  2P9D A;  3NDC A;  2YBQ A;  2P5C A;  2NPN A;  3TIX B;  2E4R A;  2EGB A;  2DXX A;  5HW4 A;  2HUX A;  2HUQ A;  2P5F A;  2P6I A;  3F7T A;  3KE8 A;  2EKA A;  3SZL A;  2EL1 A;  1VA0 A;  2DEK A;  1PJS A;  1VE2 A;  2PB4 A;  4N7B A;  2QBU A;  3ND1 A;  2P2X A;  2E15 A;  2P6D A;  2YBO A;  1V9A A;  2PCI A;  2DV3 A;  3T0F A;  2E4N A;  2EJZ A;  2OWK A;  2ZVB A;  2DSH A;  1VHV A;  2ELD A;  2EJJ A;  2E08 A;  2OWV A;  3NEI A;  3KEL A;  3T0G A;  2ZVC A;  2ED5 A;  3UV3 A;  2ED3 A;  2E8Q A;  2HUT A;  2EEQ A;  2DXW A; 
#chains in the Genus database with same CATH homology
 1PJT A;  2EK7 A;  2OWG A;  2E8H A;  1VCE A;  2EN5 A;  2EJK A;  4MUX A;  2E8R A;  2EH4 A;  4H4C A;  3URK A;  2ELE A;  2EHL A;  1CBF A;  3DNF A;  2E0N A;  3SZO A;  2DSI A;  2PCA A;  2DV5 A;  2HR8 A;  2OWU A;  2PCH A;  4E16 A;  3ZGN A;  4MV5 A;  3KWP A;  3UTC A;  2PCG A;  2CBF A;  2PCM A;  2E17 A;  2KYY A;  4MUY A;  2EMR A;  2EL2 A;  2EMU A;  2P6K A;  2BB3 A;  2DSG A;  3UWM A;  1WYZ A;  1WNG A;  3KEF A;  2E0K A;  2E07 A;  3HH1 A;  3NUT A;  2EGL A;  2PB6 A;  3ZGL A;  2EK2 A;  2OWF A;  2DV4 A;  2PB5 A;  2Z6R A;  3I4T A;  4MV0 A;  4H4D A;  4EB3 A;  3UTD A;  4H4E A;  2E7R A;  3LMM A;  1S4D A;  3KE9 A;  2ENI A;  3UV7 A;  2EH5 A;  3UV6 A;  3KEM A;  3FFY A;  2EL0 A;  2E16 A;  2DXV A;  2EHC A;  3FQ6 A;  2PCK A;  2HUV A;  3SZU A;  2DV7 A;  1PJQ A;  2E8S A;  2P6L A;  2EH2 A;  2EGS A;  1WDE A;  2EL3 A;  2EK3 A;  2EK4 A;  2P9D A;  3NDC A;  2YBQ A;  2P5C A;  2NPN A;  3TIX B;  2E4R A;  2EGB A;  2DXX A;  5HW4 A;  2HUX A;  2HUQ A;  2P5F A;  2P6I A;  3F7T A;  3KE8 A;  2EKA A;  3SZL A;  2EL1 A;  1VA0 A;  2DEK A;  1PJS A;  1VE2 A;  2PB4 A;  4N7B A;  2QBU A;  3ND1 A;  2P2X A;  2E15 A;  2P6D A;  2YBO A;  1V9A A;  2PCI A;  2DV3 A;  3T0F A;  2E4N A;  2EJZ A;  2OWK A;  2ZVB A;  2DSH A;  1VHV A;  2ELD A;  2EJJ A;  2E08 A;  2OWV A;  3NEI A;  3KEL A;  3T0G A;  2ZVC A;  2ED5 A;  3UV3 A;  2ED3 A;  2E8Q A;  2HUT A;  2EEQ A;  2DXW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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