2HUXA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLMIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
molecule tags Transferase
source organism Pyrococcus horikoshii
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2huxA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2huxA01
2EEQA 2P6LA 2DSGA 2EH4A 3FFYA 2ENIA 2P2XA 2HR8A 2EK3A 2PCMA 2EK2A 2PCHA 3KWPA 2PCKA 2E17A 2P5FA 2EK7A 2YBQA 2EL3A 2P6IA 1WYZA 2DXWA 1VCEA 2DXXA 2PCGA 4E16A 2NPNA 1WDEA 2PB6A 2ZVBA 2EJZA 2PB4A 2EGBA 2HUTA 1WNGA 2EJJA 2HUQA 3ND1A 2DEKA 3NUTA 5HW4A 2HUVA 1VE2A 2Z6RA 2QBUA 2EH2A 2EHCA 2E0KA 2YBOA 2E15A 2EL1A 2E4RA 3I4TA 1PJTA 2EKAA 2EL2A 2E8SA 2OWKA 2E16A 2OWGA 2DSHA 2HUXA 2EGLA 1PJQA 2EJKA 2E8HA 2OWUA 1VHVA 2ED3A 3NDCA 2E8QA 2CBFA 2P6DA 2PCAA 2BB3A 1VA0A 2EL0A 2DV7A 2E07A 2E08A 2EMUA 2DSIA 3FQ6A 2ELEA 2DV3A 2E7RA 2EGSA 2P5CA 3NEIA 2ELDA 1CBFA 2DV5A 1PJSA 2DXVA 2PB5A 2PCIA 2EMRA 2P6KA 2EH5A 2EK4A 2ED5A 1S4DA 2E8RA 2E4NA 2ZVCA 2P9DA 1V9AA 2E0NA 2DV4A 2OWFA 2EN5A 3HH1A 2OWVA 2EHLA
chains in the Genus database with same CATH superfamily
2EEQA 2P6LA 2DSGA 2EH4A 3FFYA 2ENIA 3T0FA 3KE8A 2P2XA 2HR8A 2EK3A 2PCMA 2EK2A 2PCHA 3KWPA 2PCKA 2E17A 2P5FA 2EK7A 2YBQA 2EL3A 2P6IA 1WYZA 2DXWA 3DNFA 4MUXA 1VCEA 2DXXA 2PCGA 4E16A 2NPNA 1WDEA 2PB6A 2ZVBA 4H4EA 2EJZA 2PB4A 3URKA 2EGBA 2HUTA 1WNGA 2EJJA 3UTCA 2HUQA 3ND1A 3KEMA 2DEKA 3NUTA 5HW4A 2HUVA 1VE2A 2Z6RA 2QBUA 2EH2A 2EHCA 3KELA 2E0KA 2YBOA 3SZUA 2E15A 2EL1A 3KE9A 2E4RA 3I4TA 1PJTA 2EKAA 2EL2A 4MV5A 2E8SA 2OWKA 2E16A 2OWGA 2DSHA 3UV6A 2HUXA 2EGLA 1PJQA 2EJKA 3TIXB 2E8HA 2OWUA 1VHVA 3LMMA 4EB3A 2ED3A 3NDCA 2E8QA 2CBFA 2P6DA 2PCAA 2BB3A 1VA0A 2EL0A 2DV7A 2E07A 2E08A 2EMUA 2DSIA 3FQ6A 2ELEA 2DV3A 2E7RA 2EGSA 2P5CA 3F7TA 3NEIA 2ELDA 4H4DA 3ZGLA 3UWMA 4MV0A 4MUYA 4N7BA 1CBFA 2DV5A 3KEFA 1PJSA 2DXVA 3UV3A 2PB5A 2PCIA 2EMRA 3SZLA 2P6KA 3T0GA 2KYYA 4H4CA 2EH5A 2EK4A 2ED5A 1S4DA 2E8RA 2E4NA 2ZVCA 2P9DA 1V9AA 2E0NA 3UTDA 3SZOA 3UV7A 3ZGNA 2DV4A 2OWFA 2EN5A 3HH1A 2OWVA 2EHLA
chains in the Genus database with same CATH topology
2EEQA 2P6LA 2DSGA 2EH4A 3FFYA 2ENIA 3T0FA 3KE8A 2P2XA 2HR8A 2EK3A 2PCMA 2EK2A 2PCHA 3KWPA 2PCKA 2E17A 2P5FA 2EK7A 2YBQA 2EL3A 2P6IA 1WYZA 2DXWA 3DNFA 4MUXA 1VCEA 2DXXA 2PCGA 4E16A 2NPNA 1WDEA 2PB6A 2ZVBA 4H4EA 2EJZA 2PB4A 3URKA 2EGBA 2HUTA 1WNGA 2EJJA 3UTCA 2HUQA 3ND1A 3KEMA 2DEKA 3NUTA 5HW4A 2HUVA 1VE2A 2Z6RA 2QBUA 2EH2A 2EHCA 3KELA 2E0KA 2YBOA 3SZUA 2E15A 2EL1A 3KE9A 2E4RA 3I4TA 1PJTA 2EKAA 2EL2A 4MV5A 2E8SA 2OWKA 2E16A 2OWGA 2DSHA 3UV6A 2HUXA 2EGLA 1PJQA 2EJKA 3TIXB 2E8HA 2OWUA 1VHVA 3LMMA 4EB3A 2ED3A 3NDCA 2E8QA 2CBFA 2P6DA 2PCAA 2BB3A 1VA0A 2EL0A 2DV7A 2E07A 2E08A 2EMUA 2DSIA 3FQ6A 2ELEA 2DV3A 2E7RA 2EGSA 2P5CA 3F7TA 3NEIA 2ELDA 4H4DA 3ZGLA 3UWMA 4MV0A 4MUYA 4N7BA 1CBFA 2DV5A 3KEFA 1PJSA 2DXVA 3UV3A 2PB5A 2PCIA 2EMRA 3SZLA 2P6KA 3T0GA 2KYYA 4H4CA 2EH5A 2EK4A 2ED5A 1S4DA 2E8RA 2E4NA 2ZVCA 2P9DA 1V9AA 2E0NA 3UTDA 3SZOA 3UV7A 3ZGNA 2DV4A 2OWFA 2EN5A 3HH1A 2OWVA 2EHLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EEQ A;  2P6L A;  2DSG A;  2EH4 A;  3FFY A;  2ENI A;  2P2X A;  2HR8 A;  2EK3 A;  2PCM A;  2EK2 A;  2PCH A;  3KWP A;  2PCK A;  2E17 A;  2P5F A;  2EK7 A;  2YBQ A;  2EL3 A;  2P6I A;  1WYZ A;  2DXW A;  1VCE A;  2DXX A;  2PCG A;  4E16 A;  2NPN A;  1WDE A;  2PB6 A;  2ZVB A;  2EJZ A;  2PB4 A;  2EGB A;  2HUT A;  1WNG A;  2EJJ A;  2HUQ A;  3ND1 A;  2DEK A;  3NUT A;  5HW4 A;  2HUV A;  1VE2 A;  2Z6R A;  2QBU A;  2EH2 A;  2EHC A;  2E0K A;  2YBO A;  2E15 A;  2EL1 A;  2E4R A;  3I4T A;  1PJT A;  2EKA A;  2EL2 A;  2E8S A;  2OWK A;  2E16 A;  2OWG A;  2DSH A;  2HUX A;  2EGL A;  1PJQ A;  2EJK A;  2E8H A;  2OWU A;  1VHV A;  2ED3 A;  3NDC A;  2E8Q A;  2CBF A;  2P6D A;  2PCA A;  2BB3 A;  1VA0 A;  2EL0 A;  2DV7 A;  2E07 A;  2E08 A;  2EMU A;  2DSI A;  3FQ6 A;  2ELE A;  2DV3 A;  2E7R A;  2EGS A;  2P5C A;  3NEI A;  2ELD A;  1CBF A;  2DV5 A;  1PJS A;  2DXV A;  2PB5 A;  2PCI A;  2EMR A;  2P6K A;  2EH5 A;  2EK4 A;  2ED5 A;  1S4D A;  2E8R A;  2E4N A;  2ZVC A;  2P9D A;  1V9A A;  2E0N A;  2DV4 A;  2OWF A;  2EN5 A;  3HH1 A;  2OWV A;  2EHL A; 
#chains in the Genus database with same CATH topology
 2EEQ A;  2P6L A;  2DSG A;  2EH4 A;  3FFY A;  2ENI A;  3T0F A;  3KE8 A;  2P2X A;  2HR8 A;  2EK3 A;  2PCM A;  2EK2 A;  2PCH A;  3KWP A;  2PCK A;  2E17 A;  2P5F A;  2EK7 A;  2YBQ A;  2EL3 A;  2P6I A;  1WYZ A;  2DXW A;  3DNF A;  4MUX A;  1VCE A;  2DXX A;  2PCG A;  4E16 A;  2NPN A;  1WDE A;  2PB6 A;  2ZVB A;  4H4E A;  2EJZ A;  2PB4 A;  3URK A;  2EGB A;  2HUT A;  1WNG A;  2EJJ A;  3UTC A;  2HUQ A;  3ND1 A;  3KEM A;  2DEK A;  3NUT A;  5HW4 A;  2HUV A;  1VE2 A;  2Z6R A;  2QBU A;  2EH2 A;  2EHC A;  3KEL A;  2E0K A;  2YBO A;  3SZU A;  2E15 A;  2EL1 A;  3KE9 A;  2E4R A;  3I4T A;  1PJT A;  2EKA A;  2EL2 A;  4MV5 A;  2E8S A;  2OWK A;  2E16 A;  2OWG A;  2DSH A;  3UV6 A;  2HUX A;  2EGL A;  1PJQ A;  2EJK A;  3TIX B;  2E8H A;  2OWU A;  1VHV A;  3LMM A;  4EB3 A;  2ED3 A;  3NDC A;  2E8Q A;  2CBF A;  2P6D A;  2PCA A;  2BB3 A;  1VA0 A;  2EL0 A;  2DV7 A;  2E07 A;  2E08 A;  2EMU A;  2DSI A;  3FQ6 A;  2ELE A;  2DV3 A;  2E7R A;  2EGS A;  2P5C A;  3F7T A;  3NEI A;  2ELD A;  4H4D A;  3ZGL A;  3UWM A;  4MV0 A;  4MUY A;  4N7B A;  1CBF A;  2DV5 A;  3KEF A;  1PJS A;  2DXV A;  3UV3 A;  2PB5 A;  2PCI A;  2EMR A;  3SZL A;  2P6K A;  3T0G A;  2KYY A;  4H4C A;  2EH5 A;  2EK4 A;  2ED5 A;  1S4D A;  2E8R A;  2E4N A;  2ZVC A;  2P9D A;  1V9A A;  2E0N A;  3UTD A;  3SZO A;  3UV7 A;  3ZGN A;  2DV4 A;  2OWF A;  2EN5 A;  3HH1 A;  2OWV A;  2EHL A; 
#chains in the Genus database with same CATH homology
 2EEQ A;  2P6L A;  2DSG A;  2EH4 A;  3FFY A;  2ENI A;  3T0F A;  3KE8 A;  2P2X A;  2HR8 A;  2EK3 A;  2PCM A;  2EK2 A;  2PCH A;  3KWP A;  2PCK A;  2E17 A;  2P5F A;  2EK7 A;  2YBQ A;  2EL3 A;  2P6I A;  1WYZ A;  2DXW A;  3DNF A;  4MUX A;  1VCE A;  2DXX A;  2PCG A;  4E16 A;  2NPN A;  1WDE A;  2PB6 A;  2ZVB A;  4H4E A;  2EJZ A;  2PB4 A;  3URK A;  2EGB A;  2HUT A;  1WNG A;  2EJJ A;  3UTC A;  2HUQ A;  3ND1 A;  3KEM A;  2DEK A;  3NUT A;  5HW4 A;  2HUV A;  1VE2 A;  2Z6R A;  2QBU A;  2EH2 A;  2EHC A;  3KEL A;  2E0K A;  2YBO A;  3SZU A;  2E15 A;  2EL1 A;  3KE9 A;  2E4R A;  3I4T A;  1PJT A;  2EKA A;  2EL2 A;  4MV5 A;  2E8S A;  2OWK A;  2E16 A;  2OWG A;  2DSH A;  3UV6 A;  2HUX A;  2EGL A;  1PJQ A;  2EJK A;  3TIX B;  2E8H A;  2OWU A;  1VHV A;  3LMM A;  4EB3 A;  2ED3 A;  3NDC A;  2E8Q A;  2CBF A;  2P6D A;  2PCA A;  2BB3 A;  1VA0 A;  2EL0 A;  2DV7 A;  2E07 A;  2E08 A;  2EMU A;  2DSI A;  3FQ6 A;  2ELE A;  2DV3 A;  2E7R A;  2EGS A;  2P5C A;  3F7T A;  3NEI A;  2ELD A;  4H4D A;  3ZGL A;  3UWM A;  4MV0 A;  4MUY A;  4N7B A;  1CBF A;  2DV5 A;  3KEF A;  1PJS A;  2DXV A;  3UV3 A;  2PB5 A;  2PCI A;  2EMR A;  3SZL A;  2P6K A;  3T0G A;  2KYY A;  4H4C A;  2EH5 A;  2EK4 A;  2ED5 A;  1S4D A;  2E8R A;  2E4N A;  2ZVC A;  2P9D A;  1V9A A;  2E0N A;  3UTD A;  3SZO A;  3UV7 A;  3ZGN A;  2DV4 A;  2OWF A;  2EN5 A;  3HH1 A;  2OWV A;  2EHL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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