2HUXA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLMIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2huxA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2huxA01
2E7RA 2EH4A 1VE2A 2OWUA 2ELDA 2ED3A 2PB5A 2E4RA 2PCAA 3NUTA 2E16A 2P6IA 2EN5A 3FQ6A 1WNGA 2DV3A 2E8RA 3HH1A 2PCMA 2P2XA 2DV7A 2EL2A 2P5CA 2P6DA 1PJQA 1WYZA 2OWGA 2OWKA 2ELEA 1PJTA 2P5FA 2EGLA 2NPNA 2EJJA 2E07A 3ND1A 2EMRA 2EGBA 2CBFA 2PCKA 2YBOA 2EJZA 2EK7A 2QBUA 3NEIA 2E08A 2E8HA 2DXXA 2EL3A 2E0NA 2EGSA 2EEQA 2OWFA 2BB3A 2Z6RA 2DV5A 1VA0A 2DEKA 2E17A 2EL1A 1PJSA 2DV4A 2PCHA 2E0KA 2EK2A 2HR8A 2ENIA 2PB4A 5HW4A 2DXWA 2EHLA 2EK3A 1WDEA 2E15A 1VHVA 2E8QA 2P6LA 2EMUA 2HUVA 1CBFA 3NDCA 2DSHA 2P6KA 2EKAA 2OWVA 3FFYA 4E16A 2E4NA 1V9AA 2EH2A 1S4DA 2EK4A 1VCEA 2E8SA 2ED5A 2YBQA 2ZVCA 2DSIA 2EH5A 2HUTA 2EJKA 2PCIA 2P9DA 2EL0A 2ZVBA 3KWPA 2PB6A 2DSGA 2PCGA 3I4TA 2EHCA 2HUXA 2HUQA 2DXVA
chains in the Genus database with same CATH superfamily
2E7RA 2EH4A 3UV7A 1VE2A 2OWUA 2ELDA 2ED3A 2PB5A 4MV0A 2E4RA 2PCAA 3NUTA 2E16A 2P6IA 2EN5A 3FQ6A 1WNGA 2DV3A 2E8RA 3HH1A 3SZUA 2PCMA 2P2XA 3KE9A 2DV7A 2EL2A 2P5CA 2P6DA 1PJQA 1WYZA 3URKA 2OWGA 2OWKA 2ELEA 4H4DA 3UV3A 1PJTA 2P5FA 2EGLA 2NPNA 2EJJA 4MV5A 2E07A 3UV6A 3ND1A 3UTDA 2EMRA 3SZOA 2EGBA 4H4EA 2CBFA 2PCKA 2YBOA 4MUYA 2EJZA 2EK7A 2QBUA 3NEIA 2E08A 3UTCA 2E8HA 3TIXB 2DXXA 3LMMA 2EL3A 2E0NA 2EGSA 2EEQA 2OWFA 3T0FA 2BB3A 2Z6RA 2DV5A 1VA0A 2DEKA 2E17A 2EL1A 1PJSA 2DV4A 2PCHA 2E0KA 3SZLA 2EK2A 2HR8A 3F7TA 2ENIA 3KE8A 2PB4A 3T0GA 3DNFA 5HW4A 2DXWA 2EHLA 3KEFA 2EK3A 1WDEA 2E15A 3KEMA 1VHVA 2E8QA 2P6LA 4H4CA 2EMUA 4EB3A 2HUVA 1CBFA 3NDCA 2DSHA 4N7BA 4MUXA 2P6KA 2EKAA 2OWVA 3FFYA 4E16A 2E4NA 1V9AA 2EH2A 1S4DA 2EK4A 3ZGNA 1VCEA 2E8SA 2ED5A 2YBQA 2ZVCA 2DSIA 2EH5A 2HUTA 2EJKA 2PCIA 2P9DA 2EL0A 2KYYA 3ZGLA 2ZVBA 3KELA 3KWPA 3UWMA 2PB6A 2DSGA 2PCGA 3I4TA 2EHCA 2HUXA 2HUQA 2DXVA
chains in the Genus database with same CATH topology
2E7RA 2EH4A 3UV7A 1VE2A 2OWUA 2ELDA 2ED3A 2PB5A 4MV0A 2E4RA 2PCAA 3NUTA 2E16A 2P6IA 2EN5A 3FQ6A 1WNGA 2DV3A 2E8RA 3HH1A 3SZUA 2PCMA 2P2XA 3KE9A 2DV7A 2EL2A 2P5CA 2P6DA 1PJQA 1WYZA 3URKA 2OWGA 2OWKA 2ELEA 4H4DA 3UV3A 1PJTA 2P5FA 2EGLA 2NPNA 2EJJA 4MV5A 2E07A 3UV6A 3ND1A 3UTDA 2EMRA 3SZOA 2EGBA 4H4EA 2CBFA 2PCKA 2YBOA 4MUYA 2EJZA 2EK7A 2QBUA 3NEIA 2E08A 3UTCA 2E8HA 3TIXB 2DXXA 3LMMA 2EL3A 2E0NA 2EGSA 2EEQA 2OWFA 3T0FA 2BB3A 2Z6RA 2DV5A 1VA0A 2DEKA 2E17A 2EL1A 1PJSA 2DV4A 2PCHA 2E0KA 3SZLA 2EK2A 2HR8A 3F7TA 2ENIA 3KE8A 2PB4A 3T0GA 3DNFA 5HW4A 2DXWA 2EHLA 3KEFA 2EK3A 1WDEA 2E15A 3KEMA 1VHVA 2E8QA 2P6LA 4H4CA 2EMUA 4EB3A 2HUVA 1CBFA 3NDCA 2DSHA 4N7BA 4MUXA 2P6KA 2EKAA 2OWVA 3FFYA 4E16A 2E4NA 1V9AA 2EH2A 1S4DA 2EK4A 3ZGNA 1VCEA 2E8SA 2ED5A 2YBQA 2ZVCA 2DSIA 2EH5A 2HUTA 2EJKA 2PCIA 2P9DA 2EL0A 2KYYA 3ZGLA 2ZVBA 3KELA 3KWPA 3UWMA 2PB6A 2DSGA 2PCGA 3I4TA 2EHCA 2HUXA 2HUQA 2DXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E7R A;  2EH4 A;  1VE2 A;  2OWU A;  2ELD A;  2ED3 A;  2PB5 A;  2E4R A;  2PCA A;  3NUT A;  2E16 A;  2P6I A;  2EN5 A;  3FQ6 A;  1WNG A;  2DV3 A;  2E8R A;  3HH1 A;  2PCM A;  2P2X A;  2DV7 A;  2EL2 A;  2P5C A;  2P6D A;  1PJQ A;  1WYZ A;  2OWG A;  2OWK A;  2ELE A;  1PJT A;  2P5F A;  2EGL A;  2NPN A;  2EJJ A;  2E07 A;  3ND1 A;  2EMR A;  2EGB A;  2CBF A;  2PCK A;  2YBO A;  2EJZ A;  2EK7 A;  2QBU A;  3NEI A;  2E08 A;  2E8H A;  2DXX A;  2EL3 A;  2E0N A;  2EGS A;  2EEQ A;  2OWF A;  2BB3 A;  2Z6R A;  2DV5 A;  1VA0 A;  2DEK A;  2E17 A;  2EL1 A;  1PJS A;  2DV4 A;  2PCH A;  2E0K A;  2EK2 A;  2HR8 A;  2ENI A;  2PB4 A;  5HW4 A;  2DXW A;  2EHL A;  2EK3 A;  1WDE A;  2E15 A;  1VHV A;  2E8Q A;  2P6L A;  2EMU A;  2HUV A;  1CBF A;  3NDC A;  2DSH A;  2P6K A;  2EKA A;  2OWV A;  3FFY A;  4E16 A;  2E4N A;  1V9A A;  2EH2 A;  1S4D A;  2EK4 A;  1VCE A;  2E8S A;  2ED5 A;  2YBQ A;  2ZVC A;  2DSI A;  2EH5 A;  2HUT A;  2EJK A;  2PCI A;  2P9D A;  2EL0 A;  2ZVB A;  3KWP A;  2PB6 A;  2DSG A;  2PCG A;  3I4T A;  2EHC A;  2HUX A;  2HUQ A;  2DXV A; 
#chains in the Genus database with same CATH topology
 2E7R A;  2EH4 A;  3UV7 A;  1VE2 A;  2OWU A;  2ELD A;  2ED3 A;  2PB5 A;  4MV0 A;  2E4R A;  2PCA A;  3NUT A;  2E16 A;  2P6I A;  2EN5 A;  3FQ6 A;  1WNG A;  2DV3 A;  2E8R A;  3HH1 A;  3SZU A;  2PCM A;  2P2X A;  3KE9 A;  2DV7 A;  2EL2 A;  2P5C A;  2P6D A;  1PJQ A;  1WYZ A;  3URK A;  2OWG A;  2OWK A;  2ELE A;  4H4D A;  3UV3 A;  1PJT A;  2P5F A;  2EGL A;  2NPN A;  2EJJ A;  4MV5 A;  2E07 A;  3UV6 A;  3ND1 A;  3UTD A;  2EMR A;  3SZO A;  2EGB A;  4H4E A;  2CBF A;  2PCK A;  2YBO A;  4MUY A;  2EJZ A;  2EK7 A;  2QBU A;  3NEI A;  2E08 A;  3UTC A;  2E8H A;  3TIX B;  2DXX A;  3LMM A;  2EL3 A;  2E0N A;  2EGS A;  2EEQ A;  2OWF A;  3T0F A;  2BB3 A;  2Z6R A;  2DV5 A;  1VA0 A;  2DEK A;  2E17 A;  2EL1 A;  1PJS A;  2DV4 A;  2PCH A;  2E0K A;  3SZL A;  2EK2 A;  2HR8 A;  3F7T A;  2ENI A;  3KE8 A;  2PB4 A;  3T0G A;  3DNF A;  5HW4 A;  2DXW A;  2EHL A;  3KEF A;  2EK3 A;  1WDE A;  2E15 A;  3KEM A;  1VHV A;  2E8Q A;  2P6L A;  4H4C A;  2EMU A;  4EB3 A;  2HUV A;  1CBF A;  3NDC A;  2DSH A;  4N7B A;  4MUX A;  2P6K A;  2EKA A;  2OWV A;  3FFY A;  4E16 A;  2E4N A;  1V9A A;  2EH2 A;  1S4D A;  2EK4 A;  3ZGN A;  1VCE A;  2E8S A;  2ED5 A;  2YBQ A;  2ZVC A;  2DSI A;  2EH5 A;  2HUT A;  2EJK A;  2PCI A;  2P9D A;  2EL0 A;  2KYY A;  3ZGL A;  2ZVB A;  3KEL A;  3KWP A;  3UWM A;  2PB6 A;  2DSG A;  2PCG A;  3I4T A;  2EHC A;  2HUX A;  2HUQ A;  2DXV A; 
#chains in the Genus database with same CATH homology
 2E7R A;  2EH4 A;  3UV7 A;  1VE2 A;  2OWU A;  2ELD A;  2ED3 A;  2PB5 A;  4MV0 A;  2E4R A;  2PCA A;  3NUT A;  2E16 A;  2P6I A;  2EN5 A;  3FQ6 A;  1WNG A;  2DV3 A;  2E8R A;  3HH1 A;  3SZU A;  2PCM A;  2P2X A;  3KE9 A;  2DV7 A;  2EL2 A;  2P5C A;  2P6D A;  1PJQ A;  1WYZ A;  3URK A;  2OWG A;  2OWK A;  2ELE A;  4H4D A;  3UV3 A;  1PJT A;  2P5F A;  2EGL A;  2NPN A;  2EJJ A;  4MV5 A;  2E07 A;  3UV6 A;  3ND1 A;  3UTD A;  2EMR A;  3SZO A;  2EGB A;  4H4E A;  2CBF A;  2PCK A;  2YBO A;  4MUY A;  2EJZ A;  2EK7 A;  2QBU A;  3NEI A;  2E08 A;  3UTC A;  2E8H A;  3TIX B;  2DXX A;  3LMM A;  2EL3 A;  2E0N A;  2EGS A;  2EEQ A;  2OWF A;  3T0F A;  2BB3 A;  2Z6R A;  2DV5 A;  1VA0 A;  2DEK A;  2E17 A;  2EL1 A;  1PJS A;  2DV4 A;  2PCH A;  2E0K A;  3SZL A;  2EK2 A;  2HR8 A;  3F7T A;  2ENI A;  3KE8 A;  2PB4 A;  3T0G A;  3DNF A;  5HW4 A;  2DXW A;  2EHL A;  3KEF A;  2EK3 A;  1WDE A;  2E15 A;  3KEM A;  1VHV A;  2E8Q A;  2P6L A;  4H4C A;  2EMU A;  4EB3 A;  2HUV A;  1CBF A;  3NDC A;  2DSH A;  4N7B A;  4MUX A;  2P6K A;  2EKA A;  2OWV A;  3FFY A;  4E16 A;  2E4N A;  1V9A A;  2EH2 A;  1S4D A;  2EK4 A;  3ZGN A;  1VCE A;  2E8S A;  2ED5 A;  2YBQ A;  2ZVC A;  2DSI A;  2EH5 A;  2HUT A;  2EJK A;  2PCI A;  2P9D A;  2EL0 A;  2KYY A;  3ZGL A;  2ZVB A;  3KEL A;  3KWP A;  3UWM A;  2PB6 A;  2DSG A;  2PCG A;  3I4T A;  2EHC A;  2HUX A;  2HUQ A;  2DXV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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