2HUXA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLMIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2huxA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2huxA01
3NEIA 2E0NA 2EL0A 2EGBA 2OWGA 2EGLA 1PJTA 2E8QA 2DSIA 2EEQA 2EH5A 2E15A 2DV7A 2ENIA 1WNGA 2BB3A 2PCHA 2NPNA 2HUXA 2ZVCA 2EMRA 2ELDA 2P6DA 2PCGA 2PCMA 2DV5A 1S4DA 2OWFA 2EL2A 3FQ6A 2PB5A 3NDCA 1PJQA 2DXWA 2E4RA 1V9AA 3I4TA 2PCKA 2YBOA 2DEKA 2QBUA 2E4NA 2ED5A 1VHVA 2Z6RA 2EK4A 2EL1A 2EL3A 3HH1A 1PJSA 2E07A 2PCAA 2P6KA 2EMUA 2P2XA 2HUTA 3FFYA 1VE2A 3KWPA 5HW4A 2EJZA 2OWUA 2EK2A 2DXXA 2P6LA 2EJJA 2EGSA 2E08A 3NUTA 2HR8A 1CBFA 2E8RA 2EK3A 2E7RA 2DSHA 2EHLA 2PB6A 2ELEA 2ED3A 1VCEA 2ZVBA 2OWVA 2DV4A 2P5FA 2EH4A 2EN5A 2E0KA 2EK7A 2P9DA 2PCIA 1VA0A 4E16A 2EH2A 2P6IA 2DXVA 3ND1A 1WYZA 2PB4A 2YBQA 2EKAA 2HUQA 2E8HA 2E17A 2DSGA 2EJKA 2HUVA 2E16A 2P5CA 2EHCA 2E8SA 2OWKA 2CBFA 1WDEA 2DV3A
chains in the Genus database with same CATH superfamily
3NEIA 2E0NA 2EL0A 2EGBA 2OWGA 3KEFA 2EGLA 4H4CA 1PJTA 2E8QA 2DSIA 3KE8A 2EEQA 2EH5A 2E15A 2DV7A 2ENIA 3UTDA 1WNGA 2BB3A 2PCHA 3KELA 2NPNA 2HUXA 2ZVCA 2EMRA 3URKA 2ELDA 2P6DA 2PCGA 3UV3A 2PCMA 2DV5A 3T0FA 1S4DA 2OWFA 3TIXB 2EL2A 3FQ6A 3KE9A 2PB5A 3NDCA 1PJQA 2DXWA 3LMMA 3SZLA 2E4RA 1V9AA 3I4TA 2PCKA 2YBOA 4MUYA 2DEKA 2QBUA 2E4NA 2ED5A 4N7BA 1VHVA 2Z6RA 2EK4A 2EL1A 3ZGLA 2EL3A 3HH1A 3SZOA 1PJSA 3UV7A 3UWMA 2E07A 2PCAA 4EB3A 2P6KA 2EMUA 2P2XA 2HUTA 3FFYA 2KYYA 1VE2A 3KWPA 5HW4A 2EJZA 2OWUA 3SZUA 2EK2A 2DXXA 4MV0A 3DNFA 2P6LA 2EJJA 3UV6A 3UTCA 2EGSA 2E08A 3NUTA 2HR8A 1CBFA 2E8RA 3ZGNA 2EK3A 2E7RA 2DSHA 2EHLA 3KEMA 2PB6A 2ELEA 2ED3A 1VCEA 2ZVBA 4H4EA 2OWVA 2DV4A 2P5FA 2EH4A 4H4DA 2EN5A 2E0KA 4MUXA 2EK7A 2P9DA 2PCIA 1VA0A 4E16A 2EH2A 2P6IA 2DXVA 3F7TA 3ND1A 1WYZA 2PB4A 2YBQA 2EKAA 2HUQA 2E8HA 2E17A 2DSGA 2EJKA 2HUVA 2E16A 2P5CA 2EHCA 2E8SA 3T0GA 2OWKA 2CBFA 1WDEA 4MV5A 2DV3A
chains in the Genus database with same CATH topology
3NEIA 2E0NA 2EL0A 2EGBA 2OWGA 3KEFA 2EGLA 4H4CA 1PJTA 2E8QA 2DSIA 3KE8A 2EEQA 2EH5A 2E15A 2DV7A 2ENIA 3UTDA 1WNGA 2BB3A 2PCHA 3KELA 2NPNA 2HUXA 2ZVCA 2EMRA 3URKA 2ELDA 2P6DA 2PCGA 3UV3A 2PCMA 2DV5A 3T0FA 1S4DA 2OWFA 3TIXB 2EL2A 3FQ6A 3KE9A 2PB5A 3NDCA 1PJQA 2DXWA 3LMMA 3SZLA 2E4RA 1V9AA 3I4TA 2PCKA 2YBOA 4MUYA 2DEKA 2QBUA 2E4NA 2ED5A 4N7BA 1VHVA 2Z6RA 2EK4A 2EL1A 3ZGLA 2EL3A 3HH1A 3SZOA 1PJSA 3UV7A 3UWMA 2E07A 2PCAA 4EB3A 2P6KA 2EMUA 2P2XA 2HUTA 3FFYA 2KYYA 1VE2A 3KWPA 5HW4A 2EJZA 2OWUA 3SZUA 2EK2A 2DXXA 4MV0A 3DNFA 2P6LA 2EJJA 3UV6A 3UTCA 2EGSA 2E08A 3NUTA 2HR8A 1CBFA 2E8RA 3ZGNA 2EK3A 2E7RA 2DSHA 2EHLA 3KEMA 2PB6A 2ELEA 2ED3A 1VCEA 2ZVBA 4H4EA 2OWVA 2DV4A 2P5FA 2EH4A 4H4DA 2EN5A 2E0KA 4MUXA 2EK7A 2P9DA 2PCIA 1VA0A 4E16A 2EH2A 2P6IA 2DXVA 3F7TA 3ND1A 1WYZA 2PB4A 2YBQA 2EKAA 2HUQA 2E8HA 2E17A 2DSGA 2EJKA 2HUVA 2E16A 2P5CA 2EHCA 2E8SA 3T0GA 2OWKA 2CBFA 1WDEA 4MV5A 2DV3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NEI A;  2E0N A;  2EL0 A;  2EGB A;  2OWG A;  2EGL A;  1PJT A;  2E8Q A;  2DSI A;  2EEQ A;  2EH5 A;  2E15 A;  2DV7 A;  2ENI A;  1WNG A;  2BB3 A;  2PCH A;  2NPN A;  2HUX A;  2ZVC A;  2EMR A;  2ELD A;  2P6D A;  2PCG A;  2PCM A;  2DV5 A;  1S4D A;  2OWF A;  2EL2 A;  3FQ6 A;  2PB5 A;  3NDC A;  1PJQ A;  2DXW A;  2E4R A;  1V9A A;  3I4T A;  2PCK A;  2YBO A;  2DEK A;  2QBU A;  2E4N A;  2ED5 A;  1VHV A;  2Z6R A;  2EK4 A;  2EL1 A;  2EL3 A;  3HH1 A;  1PJS A;  2E07 A;  2PCA A;  2P6K A;  2EMU A;  2P2X A;  2HUT A;  3FFY A;  1VE2 A;  3KWP A;  5HW4 A;  2EJZ A;  2OWU A;  2EK2 A;  2DXX A;  2P6L A;  2EJJ A;  2EGS A;  2E08 A;  3NUT A;  2HR8 A;  1CBF A;  2E8R A;  2EK3 A;  2E7R A;  2DSH A;  2EHL A;  2PB6 A;  2ELE A;  2ED3 A;  1VCE A;  2ZVB A;  2OWV A;  2DV4 A;  2P5F A;  2EH4 A;  2EN5 A;  2E0K A;  2EK7 A;  2P9D A;  2PCI A;  1VA0 A;  4E16 A;  2EH2 A;  2P6I A;  2DXV A;  3ND1 A;  1WYZ A;  2PB4 A;  2YBQ A;  2EKA A;  2HUQ A;  2E8H A;  2E17 A;  2DSG A;  2EJK A;  2HUV A;  2E16 A;  2P5C A;  2EHC A;  2E8S A;  2OWK A;  2CBF A;  1WDE A;  2DV3 A; 
#chains in the Genus database with same CATH topology
 3NEI A;  2E0N A;  2EL0 A;  2EGB A;  2OWG A;  3KEF A;  2EGL A;  4H4C A;  1PJT A;  2E8Q A;  2DSI A;  3KE8 A;  2EEQ A;  2EH5 A;  2E15 A;  2DV7 A;  2ENI A;  3UTD A;  1WNG A;  2BB3 A;  2PCH A;  3KEL A;  2NPN A;  2HUX A;  2ZVC A;  2EMR A;  3URK A;  2ELD A;  2P6D A;  2PCG A;  3UV3 A;  2PCM A;  2DV5 A;  3T0F A;  1S4D A;  2OWF A;  3TIX B;  2EL2 A;  3FQ6 A;  3KE9 A;  2PB5 A;  3NDC A;  1PJQ A;  2DXW A;  3LMM A;  3SZL A;  2E4R A;  1V9A A;  3I4T A;  2PCK A;  2YBO A;  4MUY A;  2DEK A;  2QBU A;  2E4N A;  2ED5 A;  4N7B A;  1VHV A;  2Z6R A;  2EK4 A;  2EL1 A;  3ZGL A;  2EL3 A;  3HH1 A;  3SZO A;  1PJS A;  3UV7 A;  3UWM A;  2E07 A;  2PCA A;  4EB3 A;  2P6K A;  2EMU A;  2P2X A;  2HUT A;  3FFY A;  2KYY A;  1VE2 A;  3KWP A;  5HW4 A;  2EJZ A;  2OWU A;  3SZU A;  2EK2 A;  2DXX A;  4MV0 A;  3DNF A;  2P6L A;  2EJJ A;  3UV6 A;  3UTC A;  2EGS A;  2E08 A;  3NUT A;  2HR8 A;  1CBF A;  2E8R A;  3ZGN A;  2EK3 A;  2E7R A;  2DSH A;  2EHL A;  3KEM A;  2PB6 A;  2ELE A;  2ED3 A;  1VCE A;  2ZVB A;  4H4E A;  2OWV A;  2DV4 A;  2P5F A;  2EH4 A;  4H4D A;  2EN5 A;  2E0K A;  4MUX A;  2EK7 A;  2P9D A;  2PCI A;  1VA0 A;  4E16 A;  2EH2 A;  2P6I A;  2DXV A;  3F7T A;  3ND1 A;  1WYZ A;  2PB4 A;  2YBQ A;  2EKA A;  2HUQ A;  2E8H A;  2E17 A;  2DSG A;  2EJK A;  2HUV A;  2E16 A;  2P5C A;  2EHC A;  2E8S A;  3T0G A;  2OWK A;  2CBF A;  1WDE A;  4MV5 A;  2DV3 A; 
#chains in the Genus database with same CATH homology
 3NEI A;  2E0N A;  2EL0 A;  2EGB A;  2OWG A;  3KEF A;  2EGL A;  4H4C A;  1PJT A;  2E8Q A;  2DSI A;  3KE8 A;  2EEQ A;  2EH5 A;  2E15 A;  2DV7 A;  2ENI A;  3UTD A;  1WNG A;  2BB3 A;  2PCH A;  3KEL A;  2NPN A;  2HUX A;  2ZVC A;  2EMR A;  3URK A;  2ELD A;  2P6D A;  2PCG A;  3UV3 A;  2PCM A;  2DV5 A;  3T0F A;  1S4D A;  2OWF A;  3TIX B;  2EL2 A;  3FQ6 A;  3KE9 A;  2PB5 A;  3NDC A;  1PJQ A;  2DXW A;  3LMM A;  3SZL A;  2E4R A;  1V9A A;  3I4T A;  2PCK A;  2YBO A;  4MUY A;  2DEK A;  2QBU A;  2E4N A;  2ED5 A;  4N7B A;  1VHV A;  2Z6R A;  2EK4 A;  2EL1 A;  3ZGL A;  2EL3 A;  3HH1 A;  3SZO A;  1PJS A;  3UV7 A;  3UWM A;  2E07 A;  2PCA A;  4EB3 A;  2P6K A;  2EMU A;  2P2X A;  2HUT A;  3FFY A;  2KYY A;  1VE2 A;  3KWP A;  5HW4 A;  2EJZ A;  2OWU A;  3SZU A;  2EK2 A;  2DXX A;  4MV0 A;  3DNF A;  2P6L A;  2EJJ A;  3UV6 A;  3UTC A;  2EGS A;  2E08 A;  3NUT A;  2HR8 A;  1CBF A;  2E8R A;  3ZGN A;  2EK3 A;  2E7R A;  2DSH A;  2EHL A;  3KEM A;  2PB6 A;  2ELE A;  2ED3 A;  1VCE A;  2ZVB A;  4H4E A;  2OWV A;  2DV4 A;  2P5F A;  2EH4 A;  4H4D A;  2EN5 A;  2E0K A;  4MUX A;  2EK7 A;  2P9D A;  2PCI A;  1VA0 A;  4E16 A;  2EH2 A;  2P6I A;  2DXV A;  3F7T A;  3ND1 A;  1WYZ A;  2PB4 A;  2YBQ A;  2EKA A;  2HUQ A;  2E8H A;  2E17 A;  2DSG A;  2EJK A;  2HUV A;  2E16 A;  2P5C A;  2EHC A;  2E8S A;  3T0G A;  2OWK A;  2CBF A;  1WDE A;  4MV5 A;  2DV3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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