2HUXA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 83
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLMIVEAEYLVEIAGAPREILRVNV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 83
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2006-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2huxA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2huxA01
4E16A 2OWVA 2E17A 2PB5A 1VHVA 2Z6RA 2EMUA 2HUQA 2DSHA 2E7RA 2QBUA 2BB3A 2HUXA 2EL2A 2PB4A 3ND1A 2DXVA 2P5CA 2OWKA 2P9DA 3KWPA 2DEKA 2PB6A 2EK4A 2OWUA 2ZVBA 1WYZA 2DV3A 2EL3A 2EN5A 2EMRA 2PCKA 2EGSA 5HW4A 2E0KA 2NPNA 2ELEA 2HR8A 2P6LA 1WDEA 2EK2A 2EJJA 1VE2A 2EH4A 2EL0A 2PCAA 2EKAA 2DSIA 2ED3A 3NDCA 2EEQA 3I4TA 2ED5A 2E16A 2E07A 2EK7A 2E8HA 3FFYA 1PJTA 2EHLA 2PCIA 2E4NA 1VA0A 2E0NA 2PCHA 2EH5A 1CBFA 2CBFA 2EL1A 2PCGA 2E8RA 2HUTA 1V9AA 2DXWA 2E15A 2E08A 2EJZA 2P6IA 2P6KA 3NEIA 1PJQA 2DV4A 2ELDA 2EJKA 2YBQA 2ZVCA 2P5FA 2EK3A 2E8SA 2P2XA 3NUTA 2YBOA 1S4DA 2ENIA 2PCMA 1VCEA 2P6DA 2E4RA 2OWFA 2DXXA 2EGLA 2E8QA 2EHCA 2DV7A 2EGBA 1WNGA 2DV5A 3FQ6A 2DSGA 1PJSA 2HUVA 2EH2A 2OWGA 3HH1A
chains in the Genus database with same CATH superfamily
3UV6A 4E16A 3TIXB 2OWVA 2E17A 2PB5A 1VHVA 2Z6RA 4MV0A 2EMUA 2HUQA 3F7TA 3UWMA 2DSHA 2E7RA 2QBUA 2BB3A 2HUXA 2EL2A 2PB4A 3ND1A 3UV7A 2DXVA 3KE8A 2P5CA 3SZLA 2OWKA 3T0FA 2P9DA 3UTCA 3KWPA 2DEKA 2PB6A 3KELA 4MV5A 2EK4A 2OWUA 3ZGNA 3KE9A 2ZVBA 1WYZA 2DV3A 2EL3A 2EN5A 2EMRA 2PCKA 2EGSA 5HW4A 2E0KA 2NPNA 2ELEA 3UV3A 2HR8A 3SZUA 2P6LA 1WDEA 2EK2A 3KEFA 2EJJA 1VE2A 2EH4A 2EL0A 2PCAA 2EKAA 2DSIA 2ED3A 3NDCA 3UTDA 2EEQA 3I4TA 2ED5A 2E16A 2E07A 2EK7A 4H4DA 2E8HA 3FFYA 4MUYA 1PJTA 2EHLA 2PCIA 2E4NA 4MUXA 1VA0A 2E0NA 3ZGLA 2PCHA 3DNFA 2EH5A 3KEMA 1CBFA 2CBFA 2EL1A 2PCGA 4N7BA 2E8RA 2HUTA 1V9AA 2DXWA 4H4EA 2E15A 2E08A 2EJZA 2P6IA 2P6KA 3NEIA 1PJQA 2DV4A 2ELDA 2EJKA 2YBQA 2ZVCA 2P5FA 2EK3A 2E8SA 2KYYA 3SZOA 2P2XA 3NUTA 2YBOA 1S4DA 3LMMA 2ENIA 3URKA 2PCMA 1VCEA 2P6DA 2E4RA 2OWFA 2DXXA 2EGLA 2E8QA 2EHCA 2DV7A 3T0GA 2EGBA 1WNGA 2DV5A 3FQ6A 4H4CA 2DSGA 1PJSA 4EB3A 2HUVA 2EH2A 2OWGA 3HH1A
chains in the Genus database with same CATH topology
3UV6A 4E16A 3TIXB 2OWVA 2E17A 2PB5A 1VHVA 2Z6RA 4MV0A 2EMUA 2HUQA 3F7TA 3UWMA 2DSHA 2E7RA 2QBUA 2BB3A 2HUXA 2EL2A 2PB4A 3ND1A 3UV7A 2DXVA 3KE8A 2P5CA 3SZLA 2OWKA 3T0FA 2P9DA 3UTCA 3KWPA 2DEKA 2PB6A 3KELA 4MV5A 2EK4A 2OWUA 3ZGNA 3KE9A 2ZVBA 1WYZA 2DV3A 2EL3A 2EN5A 2EMRA 2PCKA 2EGSA 5HW4A 2E0KA 2NPNA 2ELEA 3UV3A 2HR8A 3SZUA 2P6LA 1WDEA 2EK2A 3KEFA 2EJJA 1VE2A 2EH4A 2EL0A 2PCAA 2EKAA 2DSIA 2ED3A 3NDCA 3UTDA 2EEQA 3I4TA 2ED5A 2E16A 2E07A 2EK7A 4H4DA 2E8HA 3FFYA 4MUYA 1PJTA 2EHLA 2PCIA 2E4NA 4MUXA 1VA0A 2E0NA 3ZGLA 2PCHA 3DNFA 2EH5A 3KEMA 1CBFA 2CBFA 2EL1A 2PCGA 4N7BA 2E8RA 2HUTA 1V9AA 2DXWA 4H4EA 2E15A 2E08A 2EJZA 2P6IA 2P6KA 3NEIA 1PJQA 2DV4A 2ELDA 2EJKA 2YBQA 2ZVCA 2P5FA 2EK3A 2E8SA 2KYYA 3SZOA 2P2XA 3NUTA 2YBOA 1S4DA 3LMMA 2ENIA 3URKA 2PCMA 1VCEA 2P6DA 2E4RA 2OWFA 2DXXA 2EGLA 2E8QA 2EHCA 2DV7A 3T0GA 2EGBA 1WNGA 2DV5A 3FQ6A 4H4CA 2DSGA 1PJSA 4EB3A 2HUVA 2EH2A 2OWGA 3HH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E16 A;  2OWV A;  2E17 A;  2PB5 A;  1VHV A;  2Z6R A;  2EMU A;  2HUQ A;  2DSH A;  2E7R A;  2QBU A;  2BB3 A;  2HUX A;  2EL2 A;  2PB4 A;  3ND1 A;  2DXV A;  2P5C A;  2OWK A;  2P9D A;  3KWP A;  2DEK A;  2PB6 A;  2EK4 A;  2OWU A;  2ZVB A;  1WYZ A;  2DV3 A;  2EL3 A;  2EN5 A;  2EMR A;  2PCK A;  2EGS A;  5HW4 A;  2E0K A;  2NPN A;  2ELE A;  2HR8 A;  2P6L A;  1WDE A;  2EK2 A;  2EJJ A;  1VE2 A;  2EH4 A;  2EL0 A;  2PCA A;  2EKA A;  2DSI A;  2ED3 A;  3NDC A;  2EEQ A;  3I4T A;  2ED5 A;  2E16 A;  2E07 A;  2EK7 A;  2E8H A;  3FFY A;  1PJT A;  2EHL A;  2PCI A;  2E4N A;  1VA0 A;  2E0N A;  2PCH A;  2EH5 A;  1CBF A;  2CBF A;  2EL1 A;  2PCG A;  2E8R A;  2HUT A;  1V9A A;  2DXW A;  2E15 A;  2E08 A;  2EJZ A;  2P6I A;  2P6K A;  3NEI A;  1PJQ A;  2DV4 A;  2ELD A;  2EJK A;  2YBQ A;  2ZVC A;  2P5F A;  2EK3 A;  2E8S A;  2P2X A;  3NUT A;  2YBO A;  1S4D A;  2ENI A;  2PCM A;  1VCE A;  2P6D A;  2E4R A;  2OWF A;  2DXX A;  2EGL A;  2E8Q A;  2EHC A;  2DV7 A;  2EGB A;  1WNG A;  2DV5 A;  3FQ6 A;  2DSG A;  1PJS A;  2HUV A;  2EH2 A;  2OWG A;  3HH1 A; 
#chains in the Genus database with same CATH topology
 3UV6 A;  4E16 A;  3TIX B;  2OWV A;  2E17 A;  2PB5 A;  1VHV A;  2Z6R A;  4MV0 A;  2EMU A;  2HUQ A;  3F7T A;  3UWM A;  2DSH A;  2E7R A;  2QBU A;  2BB3 A;  2HUX A;  2EL2 A;  2PB4 A;  3ND1 A;  3UV7 A;  2DXV A;  3KE8 A;  2P5C A;  3SZL A;  2OWK A;  3T0F A;  2P9D A;  3UTC A;  3KWP A;  2DEK A;  2PB6 A;  3KEL A;  4MV5 A;  2EK4 A;  2OWU A;  3ZGN A;  3KE9 A;  2ZVB A;  1WYZ A;  2DV3 A;  2EL3 A;  2EN5 A;  2EMR A;  2PCK A;  2EGS A;  5HW4 A;  2E0K A;  2NPN A;  2ELE A;  3UV3 A;  2HR8 A;  3SZU A;  2P6L A;  1WDE A;  2EK2 A;  3KEF A;  2EJJ A;  1VE2 A;  2EH4 A;  2EL0 A;  2PCA A;  2EKA A;  2DSI A;  2ED3 A;  3NDC A;  3UTD A;  2EEQ A;  3I4T A;  2ED5 A;  2E16 A;  2E07 A;  2EK7 A;  4H4D A;  2E8H A;  3FFY A;  4MUY A;  1PJT A;  2EHL A;  2PCI A;  2E4N A;  4MUX A;  1VA0 A;  2E0N A;  3ZGL A;  2PCH A;  3DNF A;  2EH5 A;  3KEM A;  1CBF A;  2CBF A;  2EL1 A;  2PCG A;  4N7B A;  2E8R A;  2HUT A;  1V9A A;  2DXW A;  4H4E A;  2E15 A;  2E08 A;  2EJZ A;  2P6I A;  2P6K A;  3NEI A;  1PJQ A;  2DV4 A;  2ELD A;  2EJK A;  2YBQ A;  2ZVC A;  2P5F A;  2EK3 A;  2E8S A;  2KYY A;  3SZO A;  2P2X A;  3NUT A;  2YBO A;  1S4D A;  3LMM A;  2ENI A;  3URK A;  2PCM A;  1VCE A;  2P6D A;  2E4R A;  2OWF A;  2DXX A;  2EGL A;  2E8Q A;  2EHC A;  2DV7 A;  3T0G A;  2EGB A;  1WNG A;  2DV5 A;  3FQ6 A;  4H4C A;  2DSG A;  1PJS A;  4EB3 A;  2HUV A;  2EH2 A;  2OWG A;  3HH1 A; 
#chains in the Genus database with same CATH homology
 3UV6 A;  4E16 A;  3TIX B;  2OWV A;  2E17 A;  2PB5 A;  1VHV A;  2Z6R A;  4MV0 A;  2EMU A;  2HUQ A;  3F7T A;  3UWM A;  2DSH A;  2E7R A;  2QBU A;  2BB3 A;  2HUX A;  2EL2 A;  2PB4 A;  3ND1 A;  3UV7 A;  2DXV A;  3KE8 A;  2P5C A;  3SZL A;  2OWK A;  3T0F A;  2P9D A;  3UTC A;  3KWP A;  2DEK A;  2PB6 A;  3KEL A;  4MV5 A;  2EK4 A;  2OWU A;  3ZGN A;  3KE9 A;  2ZVB A;  1WYZ A;  2DV3 A;  2EL3 A;  2EN5 A;  2EMR A;  2PCK A;  2EGS A;  5HW4 A;  2E0K A;  2NPN A;  2ELE A;  3UV3 A;  2HR8 A;  3SZU A;  2P6L A;  1WDE A;  2EK2 A;  3KEF A;  2EJJ A;  1VE2 A;  2EH4 A;  2EL0 A;  2PCA A;  2EKA A;  2DSI A;  2ED3 A;  3NDC A;  3UTD A;  2EEQ A;  3I4T A;  2ED5 A;  2E16 A;  2E07 A;  2EK7 A;  4H4D A;  2E8H A;  3FFY A;  4MUY A;  1PJT A;  2EHL A;  2PCI A;  2E4N A;  4MUX A;  1VA0 A;  2E0N A;  3ZGL A;  2PCH A;  3DNF A;  2EH5 A;  3KEM A;  1CBF A;  2CBF A;  2EL1 A;  2PCG A;  4N7B A;  2E8R A;  2HUT A;  1V9A A;  2DXW A;  4H4E A;  2E15 A;  2E08 A;  2EJZ A;  2P6I A;  2P6K A;  3NEI A;  1PJQ A;  2DV4 A;  2ELD A;  2EJK A;  2YBQ A;  2ZVC A;  2P5F A;  2EK3 A;  2E8S A;  2KYY A;  3SZO A;  2P2X A;  3NUT A;  2YBO A;  1S4D A;  3LMM A;  2ENI A;  3URK A;  2PCM A;  1VCE A;  2P6D A;  2E4R A;  2OWF A;  2DXX A;  2EGL A;  2E8Q A;  2EHC A;  2DV7 A;  3T0G A;  2EGB A;  1WNG A;  2DV5 A;  3FQ6 A;  4H4C A;  2DSG A;  1PJS A;  4EB3 A;  2HUV A;  2EH2 A;  2OWG A;  3HH1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...