2HVAA

Solution structure of the haem-binding protein p22hbp
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
190
structure length
190
Chain Sequence
MLGMIRNSLFGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGDVYYCAGYDPPMKPYGRRNEVWLVKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Novel Haem-binding Interface in the 22 kDa Haem-binding Protein p22HBP.
pubmed doi rcsb
molecule tags Ligand binding protein
source organism Mus musculus
molecule keywords Heme-binding protein 1
total genus 20
structure length 190
sequence length 190
ec nomenclature
pdb deposition date 2006-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04832 SOUL SOUL heme-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.80.10 Alpha Beta Alpha-Beta Barrel Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A Regulatory factor, effector binding domain 2hvaA01
5KATA 1BOWA 3B49A 3D70A 5GQQA 4B0YA 4A1MA 3Q5PA 5KAWA 3Q1MA 3D71A 3D6ZA 3Q3DA 2HVAA 3E0HA 3Q2YA 1D5YA 3R8KA 4AYZB 2BOWA 1R8EA 1EXJA 1EXIA 5KAUA 3Q5SA 3D6YA 3GK6A 1JYHA 2KCUA 5KAVA 3R8JA 2GOVA 3IAOA 5KAXA 5KCBA 3LURA 3Q5RA 4AYZA
chains in the Genus database with same CATH superfamily
5KATA 1BOWA 3B49A 3D70A 5GQQA 4B0YA 4A1MA 3Q5PA 5KAWA 3Q1MA 3D71A 3D6ZA 3Q3DA 2HVAA 3E0HA 3Q2YA 1D5YA 3R8KA 4AYZB 2BOWA 1R8EA 1EXJA 1EXIA 5KAUA 3Q5SA 3D6YA 3GK6A 1JYHA 2KCUA 5KAVA 3R8JA 2GOVA 3IAOA 5KAXA 5KCBA 3LURA 3Q5RA 4AYZA
chains in the Genus database with same CATH topology
5KATA 1BOWA 3B49A 3D70A 5GQQA 4B0YA 4A1MA 3Q5PA 5KAWA 3Q1MA 3D71A 3D6ZA 3Q3DA 2HVAA 3E0HA 3Q2YA 1D5YA 3R8KA 4AYZB 2BOWA 1R8EA 1EXJA 1EXIA 5KAUA 3Q5SA 3D6YA 3GK6A 1JYHA 2KCUA 5KAVA 3R8JA 2GOVA 3IAOA 5KAXA 5KCBA 3LURA 3Q5RA 4AYZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KAT A;  1BOW A;  3B49 A;  3D70 A;  5GQQ A;  4B0Y A;  4A1M A;  3Q5P A;  5KAW A;  3Q1M A;  3D71 A;  3D6Z A;  3Q3D A;  2HVA A;  3E0H A;  3Q2Y A;  1D5Y A;  3R8K A;  4AYZ B;  2BOW A;  1R8E A;  1EXJ A;  1EXI A;  5KAU A;  3Q5S A;  3D6Y A;  3GK6 A;  1JYH A;  2KCU A;  5KAV A;  3R8J A;  2GOV A;  3IAO A;  5KAX A;  5KCB A;  3LUR A;  3Q5R A;  4AYZ A; 
#chains in the Genus database with same CATH topology
 5KAT A;  1BOW A;  3B49 A;  3D70 A;  5GQQ A;  4B0Y A;  4A1M A;  3Q5P A;  5KAW A;  3Q1M A;  3D71 A;  3D6Z A;  3Q3D A;  2HVA A;  3E0H A;  3Q2Y A;  1D5Y A;  3R8K A;  4AYZ B;  2BOW A;  1R8E A;  1EXJ A;  1EXI A;  5KAU A;  3Q5S A;  3D6Y A;  3GK6 A;  1JYH A;  2KCU A;  5KAV A;  3R8J A;  2GOV A;  3IAO A;  5KAX A;  5KCB A;  3LUR A;  3Q5R A;  4AYZ A; 
#chains in the Genus database with same CATH homology
 5KAT A;  1BOW A;  3B49 A;  3D70 A;  5GQQ A;  4B0Y A;  4A1M A;  3Q5P A;  5KAW A;  3Q1M A;  3D71 A;  3D6Z A;  3Q3D A;  2HVA A;  3E0H A;  3Q2Y A;  1D5Y A;  3R8K A;  4AYZ B;  2BOW A;  1R8E A;  1EXJ A;  1EXI A;  5KAU A;  3Q5S A;  3D6Y A;  3GK6 A;  1JYH A;  2KCU A;  5KAV A;  3R8J A;  2GOV A;  3IAO A;  5KAX A;  5KCB A;  3LUR A;  3Q5R A;  4AYZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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