2HVFA

Crystal structure of n-terminal domain of ribosomal protein l9 (ntl9), g34da
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
52
structure length
51
Chain Sequence
MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQLAIEATPANLKALEAQKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords 50S ribosomal protein L9
publication title Detecting and quantifying strain in protein folding
rcsb
total genus 13
structure length 51
sequence length 52
ec nomenclature
pdb deposition date 2006-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01281 Ribosomal_L9_N Ribosomal protein L9, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.5.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L9; domain 1 Ribosomal protein L9, N-terminal domain 2hvfA00
3J7ZH 1DIVA 1CQUA 2HBBA 2HVFA 4UY8H 2HBAA
chains in the Genus database with same CATH superfamily
4RSRA 3S2RA 3ANWA 3LPQA 2Q9QA 3CO4A 4EZFA 2EHOC 3FNDA 4FR0A 3S2QA 4UY8H 3TBNA 2HBAA 3TBOA 1DIVA 4OO7A 3REEA 2Q9QB 2X4AA 2OUTA 2QH7A 4F1EA 4OOAA 4FSDA 3EW0A 4FS8A 4KW7A 5EG5A 4F28A 2E9XD 2HJQA 2R13A 2HVFA 1CQUA 2E9XB 3J7ZH 5GHSC 3FNVA 5GHRB 2QD0A 4F2CA 2X49A 2HBBA 2LSMA
chains in the Genus database with same CATH topology
3J7ZH 1DIVA 1CQUA 2HBBA 2HVFA 4UY8H 2HBAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3J7Z H;  1DIV A;  1CQU A;  2HBB A;  2HVF A;  4UY8 H;  2HBA A; 
#chains in the Genus database with same CATH topology
 4RSR A;  3S2R A;  3ANW A;  3LPQ A;  2Q9Q A;  3CO4 A;  4EZF A;  2EHO C;  3FND A;  4FR0 A;  3S2Q A;  4UY8 H;  3TBN A;  2HBA A;  3TBO A;  1DIV A;  4OO7 A;  3REE A;  2Q9Q B;  2X4A A;  2OUT A;  2QH7 A;  4F1E A;  4OOA A;  4FSD A;  3EW0 A;  4FS8 A;  4KW7 A;  5EG5 A;  4F28 A;  2E9X D;  2HJQ A;  2R13 A;  2HVF A;  1CQU A;  2E9X B;  3J7Z H;  5GHS C;  3FNV A;  5GHR B;  2QD0 A;  4F2C A;  2X49 A;  2HBB A;  2LSM A; 
#chains in the Genus database with same CATH homology
 3J7Z H;  1DIV A;  1CQU A;  2HBB A;  2HVF A;  4UY8 H;  2HBA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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