2HVWA

Crystal structure of dcmp deaminase from streptococcus mutans
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
147
structure length
147
Chain Sequence
NRLSWQDYFMANAELISKRSTCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAIELMTQKEVEYVQHDVPRVKLGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords deoxycytidylate deaminase
publication title Crystal structures of Streptococcus mutans 2'-deoxycytidylate deaminase and its complex with substrate analog and allosteric regulator dCTP x Mg2+.
pubmed doi rcsb
source organism Streptococcus mutans
total genus 40
structure length 147
sequence length 147
chains with identical sequence B, C
ec nomenclature ec 3.5.4.12: dCMP deaminase.
pdb deposition date 2006-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 2hvwA00
3B8FA 2O96A 1UX0A 2NX8A 4O8YB 1Z3AA 3IJFX 1OX7A 2HXVA 2OG4A 1R5XA 3ZPGA 1CTTA 2ZNVA 4K1RA 1ALNA 2PW9A 2Z3GA 5GAOA 3ZPCA 1YSDA 4F7OA 4KITC 2G84A 1UX1A 4OWPA 2A8NA 2W4LA 3R2NA 4LC5A 2Z3HA 5M59B 4OCNA 3OJ6A 1OI0A 1MQ0A 4JXEA 3EX8A 5C2OA 1YSBA 2G6VA 3DMOA 4LD2A 4O8XB 5M52C 2FR6A 4OCMA 4MSJA 5CW6A 2B3JA 1CTUA 4I43B 1UAQA 2FR5A 1TIYA 1VQ2A 4NQLA 3RZUA 3RZVA 4D10F 1UWZA 4LCOA 4MSDA 2O95A 4P9CA 4LCPA 4F3WA 4OWPB 3SBGA 1AF2A 1WWRA 4LD4A 3G8QA 2OBCA 1JTKA 4MSMA 2ZNRA 4E0QA 4MS7A 4OCNB 4P9DA 4ILGC 5DCAJ 2P8RA 4G3MA 2QLCA 4WIFA 3DH1A 4ZFRA 1WN5A 4OCLA 4OCMB 2NYTA 2HVVA 4BGDC 2RPZA 1WKQA 1R5TA 4O8YA 4LCNA 2Z3JA 2KCQA 4WIGA 3OCQA 4P9EA 2O3KA 4ZD4A 1WN6A 2Z3IA 4PQTA 2HVWA 2KKSA 2B3ZA 3ZEFB 1ZABA 2P87A 3MPZA 4HRWA 4MSQA 2D30A 4EG2A 4OCLB 4HRQA 4ZD5A 2O7PA 4QFTA 2D5NA 4O8XA 4ZFTA 3E1UA 1RB7A 1P6OA
chains in the Genus database with same CATH superfamily
3B8FA 2O96A 1UX0A 2NX8A 4O8YB 1Z3AA 3IJFX 1OX7A 1VK9A 2HXVA 2OG4A 1R5XA 2B1IA 3ZPGA 1CTTA 2ZNVA 4K1RA 1ALNA 2PW9A 2Z3GA 5GAOA 1PL0A 3ZPCA 4EHIA 1YSDA 4F7OA 4KITC 2G84A 1UX1A 4OWPA 2A8NA 2W4LA 3R2NA 4LC5A 1P4RA 2Z3HA 5M59B 4OCNA 3OJ6A 1OI0A 1MQ0A 4JXEA 3EX8A 5C2OA 1YSBA 2G6VA 3DMOA 4LD2A 4O8XB 5M52C 2FR6A 4OCMA 4MSJA 1THZA 5CW6A 3VX8A 1CTUA 4I43B 2B3JA 2IU3A 1UAQA 2FR5A 1TIYA 1VQ2A 4NQLA 3RZUA 3RZVA 4D10F 1UWZA 4LCOA 4GGMX 4MSDA 2O95A 4P9CA 4LCPA 4F3WA 4OWPB 3SBGA 1AF2A 1WWRA 4LD4A 3G8QA 2OBCA 1JTKA 4MSMA 2ZNRA 4E0QA 4MS7A 4OCNB 4P9DA 4ILGC 5DCAJ 2P8RA 4G3MA 2B1GA 2QLCA 4WIFA 3DH1A 4ZFRA 2IU0A 1WN5A 4OCLA 4OCMB 2NYTA 4J6EA 2HVVA 4BGDC 2RPZA 1WKQA 1R5TA 4O8YA 4LCNA 2Z3JA 2KCQA 1PKXA 3BH1A 4WIGA 3OCQA 4P9EA 2O3KA 4ZD4A 1WN6A 2Z3IA 4PQTA 3ZZMA 2HVWA 2KKSA 2B3ZA 1G8MA 1OZ0A 3ZEFB 1ZABA 1M9NA 4A1OA 2P87A 3MPZA 4HRWA 4MSQA 1ZCZA 2D30A 4EG2A 4OCLB 4HRQA 4ZD5A 2O7PA 4QFTA 2D5NA 4O8XA 4ZFTA 3E1UA 1RB7A 1P6OA
chains in the Genus database with same CATH topology
3B8FA 2O96A 1UX0A 2NX8A 4O8YB 1Z3AA 3IJFX 1OX7A 2HXVA 2OG4A 1R5XA 3ZPGA 1CTTA 2ZNVA 4K1RA 1ALNA 2PW9A 2Z3GA 5GAOA 3ZPCA 1YSDA 4F7OA 4KITC 2G84A 1UX1A 4OWPA 2A8NA 2W4LA 3R2NA 4LC5A 2Z3HA 5M59B 4OCNA 3OJ6A 1OI0A 1MQ0A 4JXEA 3EX8A 5C2OA 1YSBA 2G6VA 3DMOA 4LD2A 4O8XB 5M52C 2FR6A 4OCMA 4MSJA 5CW6A 2B3JA 1CTUA 4I43B 1UAQA 2FR5A 1TIYA 1VQ2A 4NQLA 3RZUA 3RZVA 4D10F 1UWZA 4LCOA 4MSDA 2O95A 4P9CA 4LCPA 4F3WA 4OWPB 3SBGA 1AF2A 1WWRA 4LD4A 3G8QA 2OBCA 1JTKA 4MSMA 2ZNRA 4E0QA 4MS7A 4OCNB 4P9DA 4ILGC 5DCAJ 2P8RA 4G3MA 2QLCA 4WIFA 3DH1A 4ZFRA 1WN5A 4OCLA 4OCMB 2NYTA 2HVVA 4BGDC 2RPZA 1WKQA 1R5TA 4O8YA 4LCNA 2Z3JA 2KCQA 4WIGA 3OCQA 4P9EA 2O3KA 4ZD4A 1WN6A 2Z3IA 4PQTA 2HVWA 2KKSA 2B3ZA 3ZEFB 1ZABA 2P87A 3MPZA 4HRWA 4MSQA 2D30A 4EG2A 4OCLB 4HRQA 4ZD5A 2O7PA 4QFTA 2D5NA 4O8XA 4ZFTA 3E1UA 1RB7A 1P6OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B8F A;  2O96 A;  1UX0 A;  2NX8 A;  4O8Y B;  1Z3A A;  3IJF X;  1OX7 A;  2HXV A;  2OG4 A;  1R5X A;  3ZPG A;  1CTT A;  2ZNV A;  4K1R A;  1ALN A;  2PW9 A;  2Z3G A;  5GAO A;  3ZPC A;  1YSD A;  4F7O A;  4KIT C;  2G84 A;  1UX1 A;  4OWP A;  2A8N A;  2W4L A;  3R2N A;  4LC5 A;  2Z3H A;  5M59 B;  4OCN A;  3OJ6 A;  1OI0 A;  1MQ0 A;  4JXE A;  3EX8 A;  5C2O A;  1YSB A;  2G6V A;  3DMO A;  4LD2 A;  4O8X B;  5M52 C;  2FR6 A;  4OCM A;  4MSJ A;  5CW6 A;  2B3J A;  1CTU A;  4I43 B;  1UAQ A;  2FR5 A;  1TIY A;  1VQ2 A;  4NQL A;  3RZU A;  3RZV A;  4D10 F;  1UWZ A;  4LCO A;  4MSD A;  2O95 A;  4P9C A;  4LCP A;  4F3W A;  4OWP B;  3SBG A;  1AF2 A;  1WWR A;  4LD4 A;  3G8Q A;  2OBC A;  1JTK A;  4MSM A;  2ZNR A;  4E0Q A;  4MS7 A;  4OCN B;  4P9D A;  4ILG C;  5DCA J;  2P8R A;  4G3M A;  2QLC A;  4WIF A;  3DH1 A;  4ZFR A;  1WN5 A;  4OCL A;  4OCM B;  2NYT A;  2HVV A;  4BGD C;  2RPZ A;  1WKQ A;  1R5T A;  4O8Y A;  4LCN A;  2Z3J A;  2KCQ A;  4WIG A;  3OCQ A;  4P9E A;  2O3K A;  4ZD4 A;  1WN6 A;  2Z3I A;  4PQT A;  2HVW A;  2KKS A;  2B3Z A;  3ZEF B;  1ZAB A;  2P87 A;  3MPZ A;  4HRW A;  4MSQ A;  2D30 A;  4EG2 A;  4OCL B;  4HRQ A;  4ZD5 A;  2O7P A;  4QFT A;  2D5N A;  4O8X A;  4ZFT A;  3E1U A;  1RB7 A;  1P6O A; 
#chains in the Genus database with same CATH topology
 3B8F A;  2O96 A;  1UX0 A;  2NX8 A;  4O8Y B;  1Z3A A;  3IJF X;  1OX7 A;  1VK9 A;  2HXV A;  2OG4 A;  1R5X A;  2B1I A;  3ZPG A;  1CTT A;  2ZNV A;  4K1R A;  1ALN A;  2PW9 A;  2Z3G A;  5GAO A;  1PL0 A;  3ZPC A;  4EHI A;  1YSD A;  4F7O A;  4KIT C;  2G84 A;  1UX1 A;  4OWP A;  2A8N A;  2W4L A;  3R2N A;  4LC5 A;  1P4R A;  2Z3H A;  5M59 B;  4OCN A;  3OJ6 A;  1OI0 A;  1MQ0 A;  4JXE A;  3EX8 A;  5C2O A;  1YSB A;  2G6V A;  3DMO A;  4LD2 A;  4O8X B;  5M52 C;  2FR6 A;  4OCM A;  4MSJ A;  1THZ A;  5CW6 A;  3VX8 A;  1CTU A;  4I43 B;  2B3J A;  2IU3 A;  1UAQ A;  2FR5 A;  1TIY A;  1VQ2 A;  4NQL A;  3RZU A;  3RZV A;  4D10 F;  1UWZ A;  4LCO A;  4GGM X;  4MSD A;  2O95 A;  4P9C A;  4LCP A;  4F3W A;  4OWP B;  3SBG A;  1AF2 A;  1WWR A;  4LD4 A;  3G8Q A;  2OBC A;  1JTK A;  4MSM A;  2ZNR A;  4E0Q A;  4MS7 A;  4OCN B;  4P9D A;  4ILG C;  5DCA J;  2P8R A;  4G3M A;  2B1G A;  2QLC A;  4WIF A;  3DH1 A;  4ZFR A;  2IU0 A;  1WN5 A;  4OCL A;  4OCM B;  2NYT A;  4J6E A;  2HVV A;  4BGD C;  2RPZ A;  1WKQ A;  1R5T A;  4O8Y A;  4LCN A;  2Z3J A;  2KCQ A;  1PKX A;  3BH1 A;  4WIG A;  3OCQ A;  4P9E A;  2O3K A;  4ZD4 A;  1WN6 A;  2Z3I A;  4PQT A;  3ZZM A;  2HVW A;  2KKS A;  2B3Z A;  1G8M A;  1OZ0 A;  3ZEF B;  1ZAB A;  1M9N A;  4A1O A;  2P87 A;  3MPZ A;  4HRW A;  4MSQ A;  1ZCZ A;  2D30 A;  4EG2 A;  4OCL B;  4HRQ A;  4ZD5 A;  2O7P A;  4QFT A;  2D5N A;  4O8X A;  4ZFT A;  3E1U A;  1RB7 A;  1P6O A; 
#chains in the Genus database with same CATH homology
 3B8F A;  2O96 A;  1UX0 A;  2NX8 A;  4O8Y B;  1Z3A A;  3IJF X;  1OX7 A;  2HXV A;  2OG4 A;  1R5X A;  3ZPG A;  1CTT A;  2ZNV A;  4K1R A;  1ALN A;  2PW9 A;  2Z3G A;  5GAO A;  3ZPC A;  1YSD A;  4F7O A;  4KIT C;  2G84 A;  1UX1 A;  4OWP A;  2A8N A;  2W4L A;  3R2N A;  4LC5 A;  2Z3H A;  5M59 B;  4OCN A;  3OJ6 A;  1OI0 A;  1MQ0 A;  4JXE A;  3EX8 A;  5C2O A;  1YSB A;  2G6V A;  3DMO A;  4LD2 A;  4O8X B;  5M52 C;  2FR6 A;  4OCM A;  4MSJ A;  5CW6 A;  2B3J A;  1CTU A;  4I43 B;  1UAQ A;  2FR5 A;  1TIY A;  1VQ2 A;  4NQL A;  3RZU A;  3RZV A;  4D10 F;  1UWZ A;  4LCO A;  4MSD A;  2O95 A;  4P9C A;  4LCP A;  4F3W A;  4OWP B;  3SBG A;  1AF2 A;  1WWR A;  4LD4 A;  3G8Q A;  2OBC A;  1JTK A;  4MSM A;  2ZNR A;  4E0Q A;  4MS7 A;  4OCN B;  4P9D A;  4ILG C;  5DCA J;  2P8R A;  4G3M A;  2QLC A;  4WIF A;  3DH1 A;  4ZFR A;  1WN5 A;  4OCL A;  4OCM B;  2NYT A;  2HVV A;  4BGD C;  2RPZ A;  1WKQ A;  1R5T A;  4O8Y A;  4LCN A;  2Z3J A;  2KCQ A;  4WIG A;  3OCQ A;  4P9E A;  2O3K A;  4ZD4 A;  1WN6 A;  2Z3I A;  4PQT A;  2HVW A;  2KKS A;  2B3Z A;  3ZEF B;  1ZAB A;  2P87 A;  3MPZ A;  4HRW A;  4MSQ A;  2D30 A;  4EG2 A;  4OCL B;  4HRQ A;  4ZD5 A;  2O7P A;  4QFT A;  2D5N A;  4O8X A;  4ZFT A;  3E1U A;  1RB7 A;  1P6O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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