2HVYC

Crystal structure of an h/aca box rnp from pyrococcus furiosus
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
53
structure length
53
Chain Sequence
FRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase/biosynthetic protein/rna
molecule keywords H/ACA RNA
publication title Crystal structure of an H/ACA box ribonucleoprotein particle
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 7
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2006-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF04135 Nop10p Nucleolar RNA-binding protein, Nop10p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.40 Mainly Beta Single Sheet Rubrerythrin, domain 2 H/ACA ribonucleoprotein complex, subunit Nop10 2hvyC00
2APOB 3MQKB 3HAXC 3LWOB 2AQCA 3HJWB 2AUSB 3LWRB 2EY4E 3LWPB 3LWQB 2HVYC 3HJYB 3LWVB 2RFKB
chains in the Genus database with same CATH superfamily
2XJVA 4G6BA 1ZRPA 2B5ID 3RYGA 3S2HL 3A44A 1BE7A 4JAGA 4YWMA 1OWBA 1T9QA 1SMMA 3GTKL 1VZIA 3NFPI 5IYCL 1RYQA 3KYVA 3S17L 2ERSA 3GTOL 4AI3A 1T9PA 4B8CD 3GTPL 4U671 5JVH1 3S14L 4BY7L 4A3CL 2PMZP 1NXGA 2CR8A 4A3KL 3LWOB 1S2ZA 5FJ8L 3J7Y1 1H7VA 4GS7D 2NVQL 3IU3I 2A69D 3I4NL 2Z3QB 3H97A 4JAFA 3K35A 3PO3L 5MF6A 2AQCA 4X6AL 3GTGL 1CADA 1LKMA 1YUZA 3S1ML 1B2OA 5IP7L 3RZOL 1PFVA 4A3GL 3LNLA 5IYBL 5MFZA 3PKIA 3HOVL 1SFOL 2CKAA 1PFWA 2XJUA 1BRFA 4JAEA 3P8BA 2ERJA 1R0FA 1WJVA 4QIWP 4WFN1 1S24A 3FKIL 1F4LA 4C3JL 2R93L 2E2HL 1LKPA 3GTJL 2MS3A 2LCQA 1RYTA 1TWHL 3PIP1 1RWDA 1I6HL 3H3VM 2BE5D 5MGNA 3VPBE 5AI2A 4AR5A 3LWRB 1RDVA 2XJTA 2DSXA 2RDVA 3GTLL 2XJRA 3QQCE 2B63L 1RB9A 3MSUA 3H9CA 4C3IL 3KYWA 4A3ML 1TWFL 2XJPA 2KKDA 2A68D 4ME3A 4A3DL 2V3BB 2A6HD 3FDJA 1YK4A 4YWLA 3KYUA 3PKJA 2WAQP 1IU6A 2JI3A 2E2IL 2M4VA 3P2AA 5AN9H 1PFYA 2PPTA 4UY81 4AI1A 2NVXL 2CKCA 1VZHA 1VZGA 4AHYA 3KYYA 2HVYC 1PFUA 1BQ9A 4C2M1 3QVDA 2PSMC 1LTLA 1BFYA 1IU5A 5GADc 1SMUA 2PVEA 1Z92B 2H12A 4AR4A 4AHXA 5M3FL 1TWCL 3KYXA 5GAGc 3RZ6A 4A3FL 1P7PA 3PZAA 4AI2A 5MLC3 2V0FA 3H9BA 3B08B 2RFKB 1R0HA 5DM61 5GAEc 3HJWB 3RZTA 2PVXA 2M6PA 3WWNB 5FLML 3S1RL 1R9TL 2V0EA 4K9FA 5C44L 2NYDA 1I3QL 1K83L 2PYAA 3J7Z1 4A3LL 1FHMA 4AI0A 2AUSB 3HOYL 3LWPB 1R0JA 5IY0A 4ZN3B 4JADA 4AR3A 2J9UB 2Y0SP 2QL0A 1Y1WL 3I4ML 1E8JA 2XJQA 3H0GL 4LHLA 5K2ME 3HKZP 1QYBA 1YUXA 4A3EL 3PL5A 5JVG1 1QCVA 2HR5A 2NVTL 2K2DA 3B0AB 3M4OL 5M5XL 3LPEB 1TWGL 5GAHc 5C3EL 1RDGA 2APOB 2C6AA 1R0GA 3H99A 3HJYB 1TWAL 3S16L 2O5JD 1DVBA 2JA5L 1OWCA 2JA6L 4AHZA 5C4XL 4XXBB 2JI2A 4Y52L 2M6OA 4BBRL 4BXXL 5M5WL 1IW7D 4POFA 2YU9L 3MQKB 1SMWA 2JA7L 3WWLA 4AYBP 1B2JA 2R7ZL 1WCML 3ZG6A 1IRNA 3S1NL 1B71A 2VUML 1B13A 4AR6A 5M3ML 6RXNA 3SS2A 3S1QL 2JI1A 2Z3RB 5H1Sc 3JR7A 1VCXA 1NNQA 5IP9L 1S30A 1NXEA 3HOWL 3GTQL 3PO2L 1T9OA 2R92L 3HAXC 2L0ZA 2VL6A 4XGHA 4A93L 5C4JL 4BBSL 5DM71 1BQ8A 4RXNA 1FHHA 3PWFA 1PZXA 1IROA 4AHWA 3K7AL 5M5YL 4A3BL 1R0IA 3LWVB 4A3IL 3HOXL 4V196 5RXNA 2JA8L 3S2DL 3CQZL 2ZIXA 2C6BA 4C3HL 3HOUL 3HOZL 2M4YA 1QQTA 4BY1L 2WB1P 3RZDL 3M3YL 1YK5A 2NVYL 1Y1VL 4LHNA 1LKOA 5AI3A 1DX8A 2E2JL 1CAAA 4TVMA 8RXNA 1ODHA 2KN9A 2XJSA 3MPSA 4E6YA 2A6ED 2GMGA 5EIOC 3S15L 2AYJA 1YV1A 1C09A 2EY4E 4POGA 7RXNA 1JYBA 4TPUA 3PIO1 5IYDL 5EINC 5MFPA 4ZN1B 1I50L 3GTML 3LWQB 4A3JL 4Y7NL
chains in the Genus database with same CATH topology
2APOB 3MQKB 3HAXC 3LWOB 2AQCA 3HJWB 2AUSB 3LWRB 2EY4E 3LWPB 3LWQB 2HVYC 3HJYB 3LWVB 2RFKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2APO B;  3MQK B;  3HAX C;  3LWO B;  2AQC A;  3HJW B;  2AUS B;  3LWR B;  2EY4 E;  3LWP B;  3LWQ B;  2HVY C;  3HJY B;  3LWV B;  2RFK B; 
#chains in the Genus database with same CATH topology
 2XJV A;  4G6B A;  1ZRP A;  2B5I D;  3RYG A;  3S2H L;  3A44 A;  1BE7 A;  4JAG A;  4YWM A;  1OWB A;  1T9Q A;  1SMM A;  3GTK L;  1VZI A;  3NFP I;  5IYC L;  1RYQ A;  3KYV A;  3S17 L;  2ERS A;  3GTO L;  4AI3 A;  1T9P A;  4B8C D;  3GTP L;  4U67 1;  5JVH 1;  3S14 L;  4BY7 L;  4A3C L;  2PMZ P;  1NXG A;  2CR8 A;  4A3K L;  3LWO B;  1S2Z A;  5FJ8 L;  3J7Y 1;  1H7V A;  4GS7 D;  2NVQ L;  3IU3 I;  2A69 D;  3I4N L;  2Z3Q B;  3H97 A;  4JAF A;  3K35 A;  3PO3 L;  5MF6 A;  2AQC A;  4X6A L;  3GTG L;  1CAD A;  1LKM A;  1YUZ A;  3S1M L;  1B2O A;  5IP7 L;  3RZO L;  1PFV A;  4A3G L;  3LNL A;  5IYB L;  5MFZ A;  3PKI A;  3HOV L;  1SFO L;  2CKA A;  1PFW A;  2XJU A;  1BRF A;  4JAE A;  3P8B A;  2ERJ A;  1R0F A;  1WJV A;  4QIW P;  4WFN 1;  1S24 A;  3FKI L;  1F4L A;  4C3J L;  2R93 L;  2E2H L;  1LKP A;  3GTJ L;  2MS3 A;  2LCQ A;  1RYT A;  1TWH L;  3PIP 1;  1RWD A;  1I6H L;  3H3V M;  2BE5 D;  5MGN A;  3VPB E;  5AI2 A;  4AR5 A;  3LWR B;  1RDV A;  2XJT A;  2DSX A;  2RDV A;  3GTL L;  2XJR A;  3QQC E;  2B63 L;  1RB9 A;  3MSU A;  3H9C A;  4C3I L;  3KYW A;  4A3M L;  1TWF L;  2XJP A;  2KKD A;  2A68 D;  4ME3 A;  4A3D L;  2V3B B;  2A6H D;  3FDJ A;  1YK4 A;  4YWL A;  3KYU A;  3PKJ A;  2WAQ P;  1IU6 A;  2JI3 A;  2E2I L;  2M4V A;  3P2A A;  5AN9 H;  1PFY A;  2PPT A;  4UY8 1;  4AI1 A;  2NVX L;  2CKC A;  1VZH A;  1VZG A;  4AHY A;  3KYY A;  2HVY C;  1PFU A;  1BQ9 A;  4C2M 1;  3QVD A;  2PSM C;  1LTL A;  1BFY A;  1IU5 A;  5GAD c;  1SMU A;  2PVE A;  1Z92 B;  2H12 A;  4AR4 A;  4AHX A;  5M3F L;  1TWC L;  3KYX A;  5GAG c;  3RZ6 A;  4A3F L;  1P7P A;  3PZA A;  4AI2 A;  5MLC 3;  2V0F A;  3H9B A;  3B08 B;  2RFK B;  1R0H A;  5DM6 1;  5GAE c;  3HJW B;  3RZT A;  2PVX A;  2M6P A;  3WWN B;  5FLM L;  3S1R L;  1R9T L;  2V0E A;  4K9F A;  5C44 L;  2NYD A;  1I3Q L;  1K83 L;  2PYA A;  3J7Z 1;  4A3L L;  1FHM A;  4AI0 A;  2AUS B;  3HOY L;  3LWP B;  1R0J A;  5IY0 A;  4ZN3 B;  4JAD A;  4AR3 A;  2J9U B;  2Y0S P;  2QL0 A;  1Y1W L;  3I4M L;  1E8J A;  2XJQ A;  3H0G L;  4LHL A;  5K2M E;  3HKZ P;  1QYB A;  1YUX A;  4A3E L;  3PL5 A;  5JVG 1;  1QCV A;  2HR5 A;  2NVT L;  2K2D A;  3B0A B;  3M4O L;  5M5X L;  3LPE B;  1TWG L;  5GAH c;  5C3E L;  1RDG A;  2APO B;  2C6A A;  1R0G A;  3H99 A;  3HJY B;  1TWA L;  3S16 L;  2O5J D;  1DVB A;  2JA5 L;  1OWC A;  2JA6 L;  4AHZ A;  5C4X L;  4XXB B;  2JI2 A;  4Y52 L;  2M6O A;  4BBR L;  4BXX L;  5M5W L;  1IW7 D;  4POF A;  2YU9 L;  3MQK B;  1SMW A;  2JA7 L;  3WWL A;  4AYB P;  1B2J A;  2R7Z L;  1WCM L;  3ZG6 A;  1IRN A;  3S1N L;  1B71 A;  2VUM L;  1B13 A;  4AR6 A;  5M3M L;  6RXN A;  3SS2 A;  3S1Q L;  2JI1 A;  2Z3R B;  5H1S c;  3JR7 A;  1VCX A;  1NNQ A;  5IP9 L;  1S30 A;  1NXE A;  3HOW L;  3GTQ L;  3PO2 L;  1T9O A;  2R92 L;  3HAX C;  2L0Z A;  2VL6 A;  4XGH A;  4A93 L;  5C4J L;  4BBS L;  5DM7 1;  1BQ8 A;  4RXN A;  1FHH A;  3PWF A;  1PZX A;  1IRO A;  4AHW A;  3K7A L;  5M5Y L;  4A3B L;  1R0I A;  3LWV B;  4A3I L;  3HOX L;  4V19 6;  5RXN A;  2JA8 L;  3S2D L;  3CQZ L;  2ZIX A;  2C6B A;  4C3H L;  3HOU L;  3HOZ L;  2M4Y A;  1QQT A;  4BY1 L;  2WB1 P;  3RZD L;  3M3Y L;  1YK5 A;  2NVY L;  1Y1V L;  4LHN A;  1LKO A;  5AI3 A;  1DX8 A;  2E2J L;  1CAA A;  4TVM A;  8RXN A;  1ODH A;  2KN9 A;  2XJS A;  3MPS A;  4E6Y A;  2A6E D;  2GMG A;  5EIO C;  3S15 L;  2AYJ A;  1YV1 A;  1C09 A;  2EY4 E;  4POG A;  7RXN A;  1JYB A;  4TPU A;  3PIO 1;  5IYD L;  5EIN C;  5MFP A;  4ZN1 B;  1I50 L;  3GTM L;  3LWQ B;  4A3J L;  4Y7N L; 
#chains in the Genus database with same CATH homology
 2APO B;  3MQK B;  3HAX C;  3LWO B;  2AQC A;  3HJW B;  2AUS B;  3LWR B;  2EY4 E;  3LWP B;  3LWQ B;  2HVY C;  3HJY B;  3LWV B;  2RFK B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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