2HW0A

Nmr solution structure of the nuclease domain from the replicator initiator protein from porcine circovirus pcv2
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
115
structure length
115
Chain Sequence
PSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRDLPISLFDYFIVGEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAKGTDQQNKEYCSKEGNLLMECGAPRSQGQR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase, replication
molecule keywords Replicase
publication title Solution structure, divalent metal and DNA binding of the endonuclease domain from the replication initiation protein from porcine circovirus 2
pubmed doi rcsb
source organism Porcine circovirus 2
total genus 18
structure length 115
sequence length 115
ec nomenclature ec 3.6.1.3: Adenosinetriphosphatase.
pdb deposition date 2006-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02407 Viral_Rep Putative viral replication protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1310.20 Alpha Beta 3-Layer(aba) Sandwich Replication Protein E1; Chain: A, Replication Protein E1; Chain: A, 2hw0A00
4FGNA 5CYNA 1Z1DB 2ITJA 4GDFA 2HW0A 3QN2A 2NTCA 2IF9A 3QK2A 4LMDA 1L2MA 5D9IA 4FB3A 4NBPA 5DCXA 2ITLA 5BYGA 2FUFA 4ZO0A 2NL8A 3QFQA 4LIFA 4ZQ9A 1RZ9A 1TBDA 1M55A 1L5IA 2IPRA 1UUTA 2TBDA
chains in the Genus database with same CATH superfamily
4FGNA 1F08A 5CYNA 1Z1DB 2ITJA 4GDFA 2HW0A 3QN2A 2NTCA 1KSYA 2IF9A 3QK2A 4LMDA 4KW3A 1L2MA 4U87A 5D9IA 4FB3A 1R9WA 4NBPA 5DCXA 2ITLA 5BYGA 2FUFA 4ZO0A 2NL8A 3QFQA 4LIFA 4ZQ9A 1RZ9A 1KSXA 1TBDA 1M55A 1L5IA 3DKYA 3DKXA 2IPRA 1UUTA 2TBDA
chains in the Genus database with same CATH topology
4FGNA 1F08A 5CYNA 1Z1DB 2ITJA 4GDFA 2HW0A 3QN2A 2NTCA 1KSYA 2IF9A 3QK2A 4LMDA 4KW3A 1L2MA 4U87A 5D9IA 4FB3A 1R9WA 4NBPA 5DCXA 2ITLA 5BYGA 2FUFA 4ZO0A 2NL8A 3QFQA 4LIFA 4ZQ9A 1RZ9A 1KSXA 1TBDA 1M55A 1L5IA 3DKYA 3DKXA 2IPRA 1UUTA 2TBDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FGN A;  5CYN A;  1Z1D B;  2ITJ A;  4GDF A;  2HW0 A;  3QN2 A;  2NTC A;  2IF9 A;  3QK2 A;  4LMD A;  1L2M A;  5D9I A;  4FB3 A;  4NBP A;  5DCX A;  2ITL A;  5BYG A;  2FUF A;  4ZO0 A;  2NL8 A;  3QFQ A;  4LIF A;  4ZQ9 A;  1RZ9 A;  1TBD A;  1M55 A;  1L5I A;  2IPR A;  1UUT A;  2TBD A; 
#chains in the Genus database with same CATH topology
 4FGN A;  1F08 A;  5CYN A;  1Z1D B;  2ITJ A;  4GDF A;  2HW0 A;  3QN2 A;  2NTC A;  1KSY A;  2IF9 A;  3QK2 A;  4LMD A;  4KW3 A;  1L2M A;  4U87 A;  5D9I A;  4FB3 A;  1R9W A;  4NBP A;  5DCX A;  2ITL A;  5BYG A;  2FUF A;  4ZO0 A;  2NL8 A;  3QFQ A;  4LIF A;  4ZQ9 A;  1RZ9 A;  1KSX A;  1TBD A;  1M55 A;  1L5I A;  3DKY A;  3DKX A;  2IPR A;  1UUT A;  2TBD A; 
#chains in the Genus database with same CATH homology
 4FGN A;  1F08 A;  5CYN A;  1Z1D B;  2ITJ A;  4GDF A;  2HW0 A;  3QN2 A;  2NTC A;  1KSY A;  2IF9 A;  3QK2 A;  4LMD A;  4KW3 A;  1L2M A;  4U87 A;  5D9I A;  4FB3 A;  1R9W A;  4NBP A;  5DCX A;  2ITL A;  5BYG A;  2FUF A;  4ZO0 A;  2NL8 A;  3QFQ A;  4LIF A;  4ZQ9 A;  1RZ9 A;  1KSX A;  1TBD A;  1M55 A;  1L5I A;  3DKY A;  3DKX A;  2IPR A;  1UUT A;  2TBD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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