2HYPA

Crystal structure of rv0805 d66a mutant
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
256
structure length
230
Chain Sequence
PRPDYVLLHISDTHLIGGDDADDRLGELLEQLNQSGLRPDAIVFTGDLAAKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVGIPVSVASATCGCNLVHVYPDTVVHSVIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Hypothetical protein RV0805
publication title Structural and Biochemical Analysis of the Rv0805 Cyclic Nucleotide Phosphodiesterase from Mycobacterium tuberculosis.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 69
structure length 230
sequence length 256
ec nomenclature ec 3.1.4.53: 3',5'-cyclic-AMP phosphodiesterase.
pdb deposition date 2006-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2hypA00
4UT2A 3E7BA 1WARA 4JA9A 3THOB 4M0VA 4UT3A 1S8EA 1II7A 1S95A 3PSOA 5INBA 3H62B 3HVQA 1USHA 2NYLC 5J28A 4ORCA 1OIDA 1OI8A 1M63A 2Q8UA 3K7WC 4WWLA 1S70A 3C9FA 5C1VA 5F3WA 1TCOA 3N5UA 1SU1A 3EGHA 2GJUA 3QFKA 2QFRA 1KBPA 3KBPA 4H1YP 3H69A 4DHLA 3IVDA 3ZU0A 2NPPC 4V0XA 2AHDA 3QFMA 4ORAA 3C5WC 4I5NC 2O8GA 3V4YA 3DSCA 1IT6A 2IE3C 1MF8A 4V0WA 1XZWA 4DT2A 5B8IA 2A22A 4B2OA 5JJTA 4O43A 4Q7FA 3ZTVA 3EGGA 3FGAC 3JYFA 1UTEA 4H1SA 2HY1A 1QFCA 2BCDA 4YKEA 4FBKA 3ICFA 2CV9A 4LTYA 2HYOA 4IL1A 4UT3B 2YVTA 4FBQA 4H2FA 1T71A 2NYMC 1S3LA 2P6BA 3CK2A 3PSNA 4JA7A 3TGHA 4ZX2A 2QFPA 4H2BA 5JPFA 1HP1A 1OIEA 4FCXA 3T1IA 1XM7A 1W24A 2Z72A 3H68A 3RL4A 5DNYA 1AUIA 4H2IA 1HO5A 2O8AA 4ZVZA 3RQZA 5JPEA 2USHA 1Z2XA 3H60A 3H66A 4MOVA 2WDCA 1UF3A 5EQVA 3GVEA 4O4KA 3QFOA 1V73A 4G9JA 3THNA 1QHWA 2DFJA 1HPUA 2WDDA 3QG5C 2BDXA 4KKZA 4H2GA 2HYPA 4XPNA 2QJCA 1S3MA 3DW8C 4O5GA 3H61A 1U32A 2IAEC 2WDFA 4NZVA 3E7AA 1T70A 3K7VC 1JK7A 3RL3A 4TUGA 2XMOA 2IE4C 3H64A 4TUIA 2BQ8X 1S3NA 4LACC 4I5LC 4MOYA 4LU9A 2R17A 3AV0A 4MP0A 1NNWA 5GTUA 3IVEA 3H67A 5HPEA 4J6OA 1Z2WA 1WAO1 2JOGA 2Z06A 3AUZA 4IYPC 4F0ZA 2ZBMA 2WDEA 1G5BA 4OR9A 4UWQA 3RL5A 3P71C 3IB8A 3QFNA 2NXFA 4KBPA 4FBWA 3H63A 4DSYA 2Z1AA 3DSDA 4O24A 1FJMA 4V0VA 4ORBA 5IOHA 4HD0A 3LL8A 3IB7A 2KKNA
chains in the Genus database with same CATH superfamily
4UT2A 3E7BA 1WARA 4JA9A 3THOB 4M0VA 4UT3A 1S8EA 1II7A 1S95A 3PSOA 5INBA 3H62B 3HVQA 1USHA 2NYLC 5J28A 4ORCA 1OIDA 1OI8A 1M63A 2Q8UA 3K7WC 4WWLA 1S70A 3C9FA 5C1VA 5F3WA 1TCOA 3N5UA 1SU1A 3EGHA 2GJUA 3QFKA 2QFRA 1KBPA 3KBPA 4H1YP 3H69A 4DHLA 3IVDA 3ZU0A 2NPPC 4V0XA 2AHDA 3QFMA 3FLOA 4ORAA 3D03A 3C5WC 4I5NC 2O8GA 3V4YA 3DSCA 1IT6A 2IE3C 1MF8A 4V0WA 1XZWA 4DT2A 5B8IA 2A22A 4B2OA 5JJTA 4O43A 4Q7FA 3ZTVA 3EGGA 3FGAC 3JYFA 1UTEA 4H1SA 2HY1A 1QFCA 2BCDA 4YKEA 4FBKA 3ICFA 2CV9A 4LTYA 2HYOA 4IL1A 4UT3B 2YVTA 4FBQA 4H2FA 1T71A 2NYMC 1S3LA 2P6BA 3CK2A 3PSNA 4JA7A 3TGHA 4ZX2A 2QFPA 4H2BA 5JPFA 2YEQA 1HP1A 1OIEA 2DXNA 4FCXA 3T1IA 1XM7A 1W24A 2Z72A 3H68A 3RL4A 5DNYA 1AUIA 4H2IA 1HO5A 2O8AA 4ZVZA 3RQZA 5JPEA 2USHA 1Z2XA 3H60A 3H66A 4MOVA 2WDCA 1UF3A 5EQVA 3GVEA 4O4KA 3QFOA 1V73A 4G9JA 3THNA 1QHWA 2DFJA 1HPUA 2WDDA 3QG5C 2BDXA 4KKZA 4H2GA 2HYPA 4XPNA 2QJCA 1S3MA 3DW8C 4O5GA 3H61A 1U32A 2IAEC 2WDFA 4NZVA 3E7AA 1T70A 3K7VC 1JK7A 3E0JA 3RL3A 4TUGA 2XMOA 2IE4C 3H64A 4TUIA 2BQ8X 1S3NA 4LACC 4I5LC 4MOYA 4LU9A 2R17A 3AV0A 4MP0A 1NNWA 2ZO9B 5GTUA 3IVEA 3H67A 5HPEA 4J6OA 1Z2WA 1WAO1 2JOGA 2Z06A 3AUZA 4IYPC 4F0ZA 2ZBMA 2WDEA 1G5BA 4OR9A 4UWQA 3RL5A 3P71C 3IB8A 3QFNA 2NXFA 4KBPA 4FBWA 3H63A 4DSYA 2Z1AA 3DSDA 4O24A 1FJMA 4V0VA 2ZOAA 4ORBA 4HD0A 3LL8A 3IB7A 5IOHA 2DXLA 2KKNA
chains in the Genus database with same CATH topology
4UT2A 3E7BA 1WARA 4JA9A 3THOB 4M0VA 4UT3A 1S8EA 1II7A 1S95A 3PSOA 5INBA 3H62B 3HVQA 1USHA 2NYLC 5J28A 4ORCA 1OIDA 1OI8A 1M63A 2Q8UA 3K7WC 4WWLA 1S70A 3C9FA 5C1VA 5F3WA 1TCOA 3N5UA 1SU1A 3EGHA 2GJUA 3QFKA 2QFRA 1KBPA 3KBPA 4H1YP 3H69A 4DHLA 3IVDA 3ZU0A 2NPPC 4V0XA 2AHDA 3QFMA 3FLOA 4ORAA 3D03A 3C5WC 4I5NC 2O8GA 3V4YA 3DSCA 1IT6A 2IE3C 1MF8A 4V0WA 1XZWA 4DT2A 5B8IA 2A22A 4B2OA 5JJTA 4O43A 4Q7FA 3ZTVA 3EGGA 3FGAC 3JYFA 1UTEA 4H1SA 2HY1A 1QFCA 2BCDA 4YKEA 4FBKA 3ICFA 2CV9A 4LTYA 2HYOA 4IL1A 4UT3B 2YVTA 4FBQA 4H2FA 1T71A 2NYMC 1S3LA 2P6BA 3CK2A 3PSNA 4JA7A 3TGHA 4ZX2A 2QFPA 4H2BA 5JPFA 2YEQA 1HP1A 1OIEA 2DXNA 4FCXA 3T1IA 1XM7A 1W24A 2Z72A 3H68A 3RL4A 5DNYA 1AUIA 4H2IA 1HO5A 2O8AA 4ZVZA 3RQZA 5JPEA 2USHA 1Z2XA 3H60A 3H66A 4MOVA 2WDCA 1UF3A 5EQVA 3GVEA 4O4KA 3QFOA 1V73A 4G9JA 3THNA 1QHWA 2DFJA 1HPUA 2WDDA 3QG5C 2BDXA 4KKZA 4H2GA 2HYPA 4XPNA 2QJCA 1S3MA 3DW8C 4O5GA 3H61A 1U32A 2IAEC 2WDFA 4NZVA 3E7AA 1T70A 3K7VC 1JK7A 3E0JA 3RL3A 4TUGA 2XMOA 2IE4C 3H64A 4TUIA 2BQ8X 1S3NA 4LACC 4I5LC 4MOYA 4LU9A 2R17A 3AV0A 4MP0A 1NNWA 2ZO9B 5GTUA 3IVEA 3H67A 5HPEA 4J6OA 1Z2WA 1WAO1 2JOGA 2Z06A 3AUZA 4IYPC 4F0ZA 2ZBMA 2WDEA 1G5BA 4OR9A 4UWQA 3RL5A 3P71C 3IB8A 3QFNA 2NXFA 4KBPA 4FBWA 3H63A 4DSYA 2Z1AA 3DSDA 4O24A 1FJMA 4V0VA 2ZOAA 4ORBA 4HD0A 3LL8A 3IB7A 5IOHA 2DXLA 2KKNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UT2 A;  3E7B A;  1WAR A;  4JA9 A;  3THO B;  4M0V A;  4UT3 A;  1S8E A;  1II7 A;  1S95 A;  3PSO A;  5INB A;  3H62 B;  3HVQ A;  1USH A;  2NYL C;  5J28 A;  4ORC A;  1OID A;  1OI8 A;  1M63 A;  2Q8U A;  3K7W C;  4WWL A;  1S70 A;  3C9F A;  5C1V A;  5F3W A;  1TCO A;  3N5U A;  1SU1 A;  3EGH A;  2GJU A;  3QFK A;  2QFR A;  1KBP A;  3KBP A;  4H1Y P;  3H69 A;  4DHL A;  3IVD A;  3ZU0 A;  2NPP C;  4V0X A;  2AHD A;  3QFM A;  4ORA A;  3C5W C;  4I5N C;  2O8G A;  3V4Y A;  3DSC A;  1IT6 A;  2IE3 C;  1MF8 A;  4V0W A;  1XZW A;  4DT2 A;  5B8I A;  2A22 A;  4B2O A;  5JJT A;  4O43 A;  4Q7F A;  3ZTV A;  3EGG A;  3FGA C;  3JYF A;  1UTE A;  4H1S A;  2HY1 A;  1QFC A;  2BCD A;  4YKE A;  4FBK A;  3ICF A;  2CV9 A;  4LTY A;  2HYO A;  4IL1 A;  4UT3 B;  2YVT A;  4FBQ A;  4H2F A;  1T71 A;  2NYM C;  1S3L A;  2P6B A;  3CK2 A;  3PSN A;  4JA7 A;  3TGH A;  4ZX2 A;  2QFP A;  4H2B A;  5JPF A;  1HP1 A;  1OIE A;  4FCX A;  3T1I A;  1XM7 A;  1W24 A;  2Z72 A;  3H68 A;  3RL4 A;  5DNY A;  1AUI A;  4H2I A;  1HO5 A;  2O8A A;  4ZVZ A;  3RQZ A;  5JPE A;  2USH A;  1Z2X A;  3H60 A;  3H66 A;  4MOV A;  2WDC A;  1UF3 A;  5EQV A;  3GVE A;  4O4K A;  3QFO A;  1V73 A;  4G9J A;  3THN A;  1QHW A;  2DFJ A;  1HPU A;  2WDD A;  3QG5 C;  2BDX A;  4KKZ A;  4H2G A;  2HYP A;  4XPN A;  2QJC A;  1S3M A;  3DW8 C;  4O5G A;  3H61 A;  1U32 A;  2IAE C;  2WDF A;  4NZV A;  3E7A A;  1T70 A;  3K7V C;  1JK7 A;  3RL3 A;  4TUG A;  2XMO A;  2IE4 C;  3H64 A;  4TUI A;  2BQ8 X;  1S3N A;  4LAC C;  4I5L C;  4MOY A;  4LU9 A;  2R17 A;  3AV0 A;  4MP0 A;  1NNW A;  5GTU A;  3IVE A;  3H67 A;  5HPE A;  4J6O A;  1Z2W A;  1WAO 1;  2JOG A;  2Z06 A;  3AUZ A;  4IYP C;  4F0Z A;  2ZBM A;  2WDE A;  1G5B A;  4OR9 A;  4UWQ A;  3RL5 A;  3P71 C;  3IB8 A;  3QFN A;  2NXF A;  4KBP A;  4FBW A;  3H63 A;  4DSY A;  2Z1A A;  3DSD A;  4O24 A;  1FJM A;  4V0V A;  4ORB A;  5IOH A;  4HD0 A;  3LL8 A;  3IB7 A;  2KKN A; 
#chains in the Genus database with same CATH topology
 4UT2 A;  3E7B A;  1WAR A;  4JA9 A;  3THO B;  4M0V A;  4UT3 A;  1S8E A;  1II7 A;  1S95 A;  3PSO A;  5INB A;  3H62 B;  3HVQ A;  1USH A;  2NYL C;  5J28 A;  4ORC A;  1OID A;  1OI8 A;  1M63 A;  2Q8U A;  3K7W C;  4WWL A;  1S70 A;  3C9F A;  5C1V A;  5F3W A;  1TCO A;  3N5U A;  1SU1 A;  3EGH A;  2GJU A;  3QFK A;  2QFR A;  1KBP A;  3KBP A;  4H1Y P;  3H69 A;  4DHL A;  3IVD A;  3ZU0 A;  2NPP C;  4V0X A;  2AHD A;  3QFM A;  3FLO A;  4ORA A;  3D03 A;  3C5W C;  4I5N C;  2O8G A;  3V4Y A;  3DSC A;  1IT6 A;  2IE3 C;  1MF8 A;  4V0W A;  1XZW A;  4DT2 A;  5B8I A;  2A22 A;  4B2O A;  5JJT A;  4O43 A;  4Q7F A;  3ZTV A;  3EGG A;  3FGA C;  3JYF A;  1UTE A;  4H1S A;  2HY1 A;  1QFC A;  2BCD A;  4YKE A;  4FBK A;  3ICF A;  2CV9 A;  4LTY A;  2HYO A;  4IL1 A;  4UT3 B;  2YVT A;  4FBQ A;  4H2F A;  1T71 A;  2NYM C;  1S3L A;  2P6B A;  3CK2 A;  3PSN A;  4JA7 A;  3TGH A;  4ZX2 A;  2QFP A;  4H2B A;  5JPF A;  2YEQ A;  1HP1 A;  1OIE A;  2DXN A;  4FCX A;  3T1I A;  1XM7 A;  1W24 A;  2Z72 A;  3H68 A;  3RL4 A;  5DNY A;  1AUI A;  4H2I A;  1HO5 A;  2O8A A;  4ZVZ A;  3RQZ A;  5JPE A;  2USH A;  1Z2X A;  3H60 A;  3H66 A;  4MOV A;  2WDC A;  1UF3 A;  5EQV A;  3GVE A;  4O4K A;  3QFO A;  1V73 A;  4G9J A;  3THN A;  1QHW A;  2DFJ A;  1HPU A;  2WDD A;  3QG5 C;  2BDX A;  4KKZ A;  4H2G A;  2HYP A;  4XPN A;  2QJC A;  1S3M A;  3DW8 C;  4O5G A;  3H61 A;  1U32 A;  2IAE C;  2WDF A;  4NZV A;  3E7A A;  1T70 A;  3K7V C;  1JK7 A;  3E0J A;  3RL3 A;  4TUG A;  2XMO A;  2IE4 C;  3H64 A;  4TUI A;  2BQ8 X;  1S3N A;  4LAC C;  4I5L C;  4MOY A;  4LU9 A;  2R17 A;  3AV0 A;  4MP0 A;  1NNW A;  2ZO9 B;  5GTU A;  3IVE A;  3H67 A;  5HPE A;  4J6O A;  1Z2W A;  1WAO 1;  2JOG A;  2Z06 A;  3AUZ A;  4IYP C;  4F0Z A;  2ZBM A;  2WDE A;  1G5B A;  4OR9 A;  4UWQ A;  3RL5 A;  3P71 C;  3IB8 A;  3QFN A;  2NXF A;  4KBP A;  4FBW A;  3H63 A;  4DSY A;  2Z1A A;  3DSD A;  4O24 A;  1FJM A;  4V0V A;  2ZOA A;  4ORB A;  4HD0 A;  3LL8 A;  3IB7 A;  5IOH A;  2DXL A;  2KKN A; 
#chains in the Genus database with same CATH homology
 4UT2 A;  3E7B A;  1WAR A;  4JA9 A;  3THO B;  4M0V A;  4UT3 A;  1S8E A;  1II7 A;  1S95 A;  3PSO A;  5INB A;  3H62 B;  3HVQ A;  1USH A;  2NYL C;  5J28 A;  4ORC A;  1OID A;  1OI8 A;  1M63 A;  2Q8U A;  3K7W C;  4WWL A;  1S70 A;  3C9F A;  5C1V A;  5F3W A;  1TCO A;  3N5U A;  1SU1 A;  3EGH A;  2GJU A;  3QFK A;  2QFR A;  1KBP A;  3KBP A;  4H1Y P;  3H69 A;  4DHL A;  3IVD A;  3ZU0 A;  2NPP C;  4V0X A;  2AHD A;  3QFM A;  3FLO A;  4ORA A;  3D03 A;  3C5W C;  4I5N C;  2O8G A;  3V4Y A;  3DSC A;  1IT6 A;  2IE3 C;  1MF8 A;  4V0W A;  1XZW A;  4DT2 A;  5B8I A;  2A22 A;  4B2O A;  5JJT A;  4O43 A;  4Q7F A;  3ZTV A;  3EGG A;  3FGA C;  3JYF A;  1UTE A;  4H1S A;  2HY1 A;  1QFC A;  2BCD A;  4YKE A;  4FBK A;  3ICF A;  2CV9 A;  4LTY A;  2HYO A;  4IL1 A;  4UT3 B;  2YVT A;  4FBQ A;  4H2F A;  1T71 A;  2NYM C;  1S3L A;  2P6B A;  3CK2 A;  3PSN A;  4JA7 A;  3TGH A;  4ZX2 A;  2QFP A;  4H2B A;  5JPF A;  2YEQ A;  1HP1 A;  1OIE A;  2DXN A;  4FCX A;  3T1I A;  1XM7 A;  1W24 A;  2Z72 A;  3H68 A;  3RL4 A;  5DNY A;  1AUI A;  4H2I A;  1HO5 A;  2O8A A;  4ZVZ A;  3RQZ A;  5JPE A;  2USH A;  1Z2X A;  3H60 A;  3H66 A;  4MOV A;  2WDC A;  1UF3 A;  5EQV A;  3GVE A;  4O4K A;  3QFO A;  1V73 A;  4G9J A;  3THN A;  1QHW A;  2DFJ A;  1HPU A;  2WDD A;  3QG5 C;  2BDX A;  4KKZ A;  4H2G A;  2HYP A;  4XPN A;  2QJC A;  1S3M A;  3DW8 C;  4O5G A;  3H61 A;  1U32 A;  2IAE C;  2WDF A;  4NZV A;  3E7A A;  1T70 A;  3K7V C;  1JK7 A;  3E0J A;  3RL3 A;  4TUG A;  2XMO A;  2IE4 C;  3H64 A;  4TUI A;  2BQ8 X;  1S3N A;  4LAC C;  4I5L C;  4MOY A;  4LU9 A;  2R17 A;  3AV0 A;  4MP0 A;  1NNW A;  2ZO9 B;  5GTU A;  3IVE A;  3H67 A;  5HPE A;  4J6O A;  1Z2W A;  1WAO 1;  2JOG A;  2Z06 A;  3AUZ A;  4IYP C;  4F0Z A;  2ZBM A;  2WDE A;  1G5B A;  4OR9 A;  4UWQ A;  3RL5 A;  3P71 C;  3IB8 A;  3QFN A;  2NXF A;  4KBP A;  4FBW A;  3H63 A;  4DSY A;  2Z1A A;  3DSD A;  4O24 A;  1FJM A;  4V0V A;  2ZOA A;  4ORB A;  4HD0 A;  3LL8 A;  3IB7 A;  5IOH A;  2DXL A;  2KKN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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