2I02A

Crystal structure of a pyridoxamine 5'-phosphate oxidase-like family protein (npun_r6570) from nostoc punctiforme pcc 73102 at 1.80 a resolution
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
143
structure length
140
Chain Sequence
TDRTQEIQKLHELIKNIDYGMFTTVDDDGSLHSYPMSKSGDEATLWFFTYAGSHKVTEIEHHEQVNVSFSSPEQQRYVSISGTSQLVKDRNKMRELWKPELQTWFPKGLDEPDIALLKVNINQVNYWDSTSSFKPQTISF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords general stress protein of COG3871
publication title Crystal structure of general stress protein of COG3871 (ZP_00108720.1) from Nostoc punctiforme PCC 73102 at 1.80 A resolution
rcsb
source organism Nostoc punctiforme
total genus 39
structure length 140
sequence length 143
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16242 Pyrid_ox_like Pyridoxamine 5'-phosphate oxidase like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2i02A00
1YOAA 2ARZA 3RH7A 4N7RC 1G76A 4HMVA 1RZ1A 4F07A 2HTDA 2RDEA 4Z85A 4IRAA 1G78A 1RFEA 2D5MA 2PTFA 3K88A 2OU5A 3R5PA 2FHQA 5BNCA 3ZODA 3U0IA 3SWJA 4XJ2A 3ZOFA 2AQ6A 2R6VA 3ZOEA 3ZOGA 2A2JA 3FGEA 3A6QA 4L82A 3A6RA 2QCKA 3F7EA 1USCA 4HMUA 3HMZA 3DB0A 1VL7A 2HTIA 3KYGA 1I0RA 2RE7A 3HY8A 2I51A 2GJGA 1WLIA 3DNHA 1W3RA 2E83A 2ED4A 3E4VA 2D36A 3BA3A 4HX6A 1USFA 1XXOA 3R5WA 3U5WA 1WV4A 3ZOCA 3NFWA 2X1KA 3R5ZA 1FLMA 4XHYA 2IABA 1WLKA 3VYAA 2VPAA 3CP3A 3CB0A 4HMTA 2ECUA 2X1JA 1JNWA 2ASFA 5JABA 4R82A 1RZ0A 1G79A 2D37A 3A20A 1XHNA 1NRGA 3U35A 5CHOA 5ESCA 4HMWA 3ZOHA 2Q9KA 3H96A 3VY2A 3R5YA 2FG9A 2OL5A 2ECRA 4HMXA 1W3PA 1I0SA 4HMSA 4ZKYA 1TY9A 3DMBA 2IMLA 2HQ7A 3K86A 3U34A 1W3QA 3AWHA 4QVBA 3R5RA 1EJEA 3TGVA 3R5LA 3BNKA 3EC6A 2D38A 2I02A 3BPKA 1AXJA 1W3OA 1W9AA 3K87A 4YWNA 3FKHA 3KYFA 4Y9IA 1T9MA 1CI0A 3VY5A 2FURA 3PFTA 2NR4A 4YBNA 3IN6A 2HHZA 2IG6A 3B5MA 5CHEC 1Y30A 2HQ9A 1G77A 2QEAA 3GASA 1YLNA 1WGBA 3AMFA 2R0XA 1DNLA
chains in the Genus database with same CATH superfamily
1YOAA 2ARZA 3RH7A 4N7RC 1G76A 4HMVA 1RZ1A 4F07A 2HTDA 2RDEA 4Z85A 4IRAA 1G78A 1RFEA 2D5MA 2PTFA 3K88A 2OU5A 3R5PA 2FHQA 5BNCA 3ZODA 3U0IA 3HE1A 3V4HA 3SWJA 4XJ2A 3ZOFA 2AQ6A 2R6VA 3ZOEA 3ZOGA 2A2JA 3FGEA 3A6QA 4L82A 3A6RA 2QCKA 3F7EA 1USCA 4HMUA 3HMZA 3DB0A 1VL7A 2HTIA 3KYGA 1I0RA 2RE7A 3HY8A 2I51A 2GJGA 1WLIA 3DNHA 1W3RA 2E83A 2ED4A 3E4VA 4W64A 2D36A 3BA3A 4MTKA 4HX6A 1USFA 1XXOA 3R5WA 4TV4A 3U5WA 1WV4A 3ZOCA 3NFWA 2X1KA 3R5ZA 1FLMA 4XHYA 2IABA 1WLKA 2P5ZX 3VYAA 2VPAA 3CP3A 3CB0A 4HMTA 2ECUA 2X1JA 1JNWA 2ASFA 5JABA 4R82A 1RZ0A 1G79A 2D37A 3A20A 1XHNA 1NRGA 3U35A 4HKHA 5CHOA 5ESCA 4HMWA 3ZOHA 2Q9KA 3H96A 3VY2A 3R5YA 2FG9A 2OL5A 2ECRA 4HMXA 1W3PA 1I0SA 4HMSA 4ZKYA 4UHVA 1TY9A 3DMBA 2IMLA 2K4QA 2HQ7A 3K86A 3U34A 1W3QA 3AWHA 4QVBA 3R5RA 1EJEA 3TGVA 3R5LA 3BNKA 3EC6A 2D38A 2I02A 3BPKA 1AXJA 1W3OA 3EAAA 1W9AA 3K87A 4YWNA 3FKHA 3KYFA 4Y9IA 1T9MA 1CI0A 3VY5A 2GUJA 2FURA 3PFTA 1Y12A 2NR4A 4YBNA 3IN6A 2HHZA 2IG6A 3B5MA 2L1TA 5CHEC 1Y30A 2HQ9A 1G77A 2QEAA 3GASA 1YLNA 1WGBA 3AMFA 2R0XA 1DNLA
chains in the Genus database with same CATH topology
1YOAA 2ARZA 3RH7A 4N7RC 1G76A 4HMVA 1RZ1A 4F07A 2HTDA 2RDEA 4Z85A 4IRAA 1G78A 1RFEA 2D5MA 2PTFA 3K88A 2OU5A 3R5PA 2FHQA 5BNCA 3ZODA 3U0IA 3SWJA 4XJ2A 3ZOFA 2AQ6A 2R6VA 3ZOEA 3ZOGA 2A2JA 3FGEA 3A6QA 4L82A 3A6RA 2QCKA 3F7EA 1USCA 4HMUA 3HMZA 3DB0A 1VL7A 2HTIA 3KYGA 1I0RA 2RE7A 3HY8A 2I51A 2GJGA 1WLIA 3DNHA 1W3RA 2E83A 2ED4A 3E4VA 2D36A 3BA3A 4HX6A 1USFA 1XXOA 3R5WA 3U5WA 1WV4A 3ZOCA 3NFWA 2X1KA 3R5ZA 1FLMA 4XHYA 2IABA 1WLKA 3VYAA 2VPAA 3CP3A 3CB0A 4HMTA 2ECUA 2X1JA 1JNWA 2ASFA 5JABA 4R82A 1RZ0A 1G79A 2D37A 3A20A 1XHNA 1NRGA 3U35A 5CHOA 5ESCA 4HMWA 3ZOHA 2Q9KA 3H96A 3VY2A 3R5YA 2FG9A 2OL5A 2ECRA 4HMXA 1W3PA 1I0SA 4HMSA 4ZKYA 1TY9A 3DMBA 2IMLA 2HQ7A 3K86A 3U34A 1W3QA 3AWHA 4QVBA 3R5RA 1EJEA 3TGVA 3R5LA 3BNKA 3EC6A 2D38A 2I02A 3BPKA 1AXJA 1W3OA 1W9AA 3K87A 4YWNA 3FKHA 3KYFA 4Y9IA 1T9MA 1CI0A 3VY5A 2FURA 3PFTA 2NR4A 4YBNA 3IN6A 2HHZA 2IG6A 3B5MA 5CHEC 1Y30A 2HQ9A 1G77A 2QEAA 3GASA 1YLNA 1WGBA 3AMFA 2R0XA 1DNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YOA A;  2ARZ A;  3RH7 A;  4N7R C;  1G76 A;  4HMV A;  1RZ1 A;  4F07 A;  2HTD A;  2RDE A;  4Z85 A;  4IRA A;  1G78 A;  1RFE A;  2D5M A;  2PTF A;  3K88 A;  2OU5 A;  3R5P A;  2FHQ A;  5BNC A;  3ZOD A;  3U0I A;  3SWJ A;  4XJ2 A;  3ZOF A;  2AQ6 A;  2R6V A;  3ZOE A;  3ZOG A;  2A2J A;  3FGE A;  3A6Q A;  4L82 A;  3A6R A;  2QCK A;  3F7E A;  1USC A;  4HMU A;  3HMZ A;  3DB0 A;  1VL7 A;  2HTI A;  3KYG A;  1I0R A;  2RE7 A;  3HY8 A;  2I51 A;  2GJG A;  1WLI A;  3DNH A;  1W3R A;  2E83 A;  2ED4 A;  3E4V A;  2D36 A;  3BA3 A;  4HX6 A;  1USF A;  1XXO A;  3R5W A;  3U5W A;  1WV4 A;  3ZOC A;  3NFW A;  2X1K A;  3R5Z A;  1FLM A;  4XHY A;  2IAB A;  1WLK A;  3VYA A;  2VPA A;  3CP3 A;  3CB0 A;  4HMT A;  2ECU A;  2X1J A;  1JNW A;  2ASF A;  5JAB A;  4R82 A;  1RZ0 A;  1G79 A;  2D37 A;  3A20 A;  1XHN A;  1NRG A;  3U35 A;  5CHO A;  5ESC A;  4HMW A;  3ZOH A;  2Q9K A;  3H96 A;  3VY2 A;  3R5Y A;  2FG9 A;  2OL5 A;  2ECR A;  4HMX A;  1W3P A;  1I0S A;  4HMS A;  4ZKY A;  1TY9 A;  3DMB A;  2IML A;  2HQ7 A;  3K86 A;  3U34 A;  1W3Q A;  3AWH A;  4QVB A;  3R5R A;  1EJE A;  3TGV A;  3R5L A;  3BNK A;  3EC6 A;  2D38 A;  2I02 A;  3BPK A;  1AXJ A;  1W3O A;  1W9A A;  3K87 A;  4YWN A;  3FKH A;  3KYF A;  4Y9I A;  1T9M A;  1CI0 A;  3VY5 A;  2FUR A;  3PFT A;  2NR4 A;  4YBN A;  3IN6 A;  2HHZ A;  2IG6 A;  3B5M A;  5CHE C;  1Y30 A;  2HQ9 A;  1G77 A;  2QEA A;  3GAS A;  1YLN A;  1WGB A;  3AMF A;  2R0X A;  1DNL A; 
#chains in the Genus database with same CATH topology
 1YOA A;  2ARZ A;  3RH7 A;  4N7R C;  1G76 A;  4HMV A;  1RZ1 A;  4F07 A;  2HTD A;  2RDE A;  4Z85 A;  4IRA A;  1G78 A;  1RFE A;  2D5M A;  2PTF A;  3K88 A;  2OU5 A;  3R5P A;  2FHQ A;  5BNC A;  3ZOD A;  3U0I A;  3HE1 A;  3V4H A;  3SWJ A;  4XJ2 A;  3ZOF A;  2AQ6 A;  2R6V A;  3ZOE A;  3ZOG A;  2A2J A;  3FGE A;  3A6Q A;  4L82 A;  3A6R A;  2QCK A;  3F7E A;  1USC A;  4HMU A;  3HMZ A;  3DB0 A;  1VL7 A;  2HTI A;  3KYG A;  1I0R A;  2RE7 A;  3HY8 A;  2I51 A;  2GJG A;  1WLI A;  3DNH A;  1W3R A;  2E83 A;  2ED4 A;  3E4V A;  4W64 A;  2D36 A;  3BA3 A;  4MTK A;  4HX6 A;  1USF A;  1XXO A;  3R5W A;  4TV4 A;  3U5W A;  1WV4 A;  3ZOC A;  3NFW A;  2X1K A;  3R5Z A;  1FLM A;  4XHY A;  2IAB A;  1WLK A;  2P5Z X;  3VYA A;  2VPA A;  3CP3 A;  3CB0 A;  4HMT A;  2ECU A;  2X1J A;  1JNW A;  2ASF A;  5JAB A;  4R82 A;  1RZ0 A;  1G79 A;  2D37 A;  3A20 A;  1XHN A;  1NRG A;  3U35 A;  4HKH A;  5CHO A;  5ESC A;  4HMW A;  3ZOH A;  2Q9K A;  3H96 A;  3VY2 A;  3R5Y A;  2FG9 A;  2OL5 A;  2ECR A;  4HMX A;  1W3P A;  1I0S A;  4HMS A;  4ZKY A;  4UHV A;  1TY9 A;  3DMB A;  2IML A;  2K4Q A;  2HQ7 A;  3K86 A;  3U34 A;  1W3Q A;  3AWH A;  4QVB A;  3R5R A;  1EJE A;  3TGV A;  3R5L A;  3BNK A;  3EC6 A;  2D38 A;  2I02 A;  3BPK A;  1AXJ A;  1W3O A;  3EAA A;  1W9A A;  3K87 A;  4YWN A;  3FKH A;  3KYF A;  4Y9I A;  1T9M A;  1CI0 A;  3VY5 A;  2GUJ A;  2FUR A;  3PFT A;  1Y12 A;  2NR4 A;  4YBN A;  3IN6 A;  2HHZ A;  2IG6 A;  3B5M A;  2L1T A;  5CHE C;  1Y30 A;  2HQ9 A;  1G77 A;  2QEA A;  3GAS A;  1YLN A;  1WGB A;  3AMF A;  2R0X A;  1DNL A; 
#chains in the Genus database with same CATH homology
 1YOA A;  2ARZ A;  3RH7 A;  4N7R C;  1G76 A;  4HMV A;  1RZ1 A;  4F07 A;  2HTD A;  2RDE A;  4Z85 A;  4IRA A;  1G78 A;  1RFE A;  2D5M A;  2PTF A;  3K88 A;  2OU5 A;  3R5P A;  2FHQ A;  5BNC A;  3ZOD A;  3U0I A;  3SWJ A;  4XJ2 A;  3ZOF A;  2AQ6 A;  2R6V A;  3ZOE A;  3ZOG A;  2A2J A;  3FGE A;  3A6Q A;  4L82 A;  3A6R A;  2QCK A;  3F7E A;  1USC A;  4HMU A;  3HMZ A;  3DB0 A;  1VL7 A;  2HTI A;  3KYG A;  1I0R A;  2RE7 A;  3HY8 A;  2I51 A;  2GJG A;  1WLI A;  3DNH A;  1W3R A;  2E83 A;  2ED4 A;  3E4V A;  2D36 A;  3BA3 A;  4HX6 A;  1USF A;  1XXO A;  3R5W A;  3U5W A;  1WV4 A;  3ZOC A;  3NFW A;  2X1K A;  3R5Z A;  1FLM A;  4XHY A;  2IAB A;  1WLK A;  3VYA A;  2VPA A;  3CP3 A;  3CB0 A;  4HMT A;  2ECU A;  2X1J A;  1JNW A;  2ASF A;  5JAB A;  4R82 A;  1RZ0 A;  1G79 A;  2D37 A;  3A20 A;  1XHN A;  1NRG A;  3U35 A;  5CHO A;  5ESC A;  4HMW A;  3ZOH A;  2Q9K A;  3H96 A;  3VY2 A;  3R5Y A;  2FG9 A;  2OL5 A;  2ECR A;  4HMX A;  1W3P A;  1I0S A;  4HMS A;  4ZKY A;  1TY9 A;  3DMB A;  2IML A;  2HQ7 A;  3K86 A;  3U34 A;  1W3Q A;  3AWH A;  4QVB A;  3R5R A;  1EJE A;  3TGV A;  3R5L A;  3BNK A;  3EC6 A;  2D38 A;  2I02 A;  3BPK A;  1AXJ A;  1W3O A;  1W9A A;  3K87 A;  4YWN A;  3FKH A;  3KYF A;  4Y9I A;  1T9M A;  1CI0 A;  3VY5 A;  2FUR A;  3PFT A;  2NR4 A;  4YBN A;  3IN6 A;  2HHZ A;  2IG6 A;  3B5M A;  5CHE C;  1Y30 A;  2HQ9 A;  1G77 A;  2QEA A;  3GAS A;  1YLN A;  1WGB A;  3AMF A;  2R0X A;  1DNL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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