2I06A

Escherichia coli replication terminator protein (tus) complexed with dna- locked form
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
305
structure length
305
Chain Sequence
DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Polarity of Termination of DNA Replication in E. coli.
rcsb
molecule tags Replication/dna
source organism Escherichia coli
molecule keywords 5'-D(*T*TP*AP*GP*TP*TP*AP*CP*AP*AP*CP*AP*TP*AP*CP*T)-3'
total genus 86
structure length 305
sequence length 305
ec nomenclature
pdb deposition date 2006-08-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05472 Ter DNA replication terminus site-binding protein (Ter protein)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.54.10 Alpha Beta 2-Layer Sandwich Replication Terminator Protein; Chain A, domain 2 Replication Terminator Protein; Chain A, domain 2 2i06A02
3.50.14.10 Alpha Beta 3-Layer(bba) Sandwich Replication Terminator Protein (Tus); Chain A, domain 1 Replication terminator Tus, domain 1 superfamily/Replication terminator Tus 2i06A01
2EWJA 4XR2A 2I06A 4XR3A 4XR1A 4XR0A 1ECRA 2I05A
chains in the Genus database with same CATH superfamily
1TKYA 1V4PA 2ZZEA 2ZZGA 1QF6A 4XR3A 2I05A 3RFNA 1TKGA 1WXOA 2I06A 2EWJA 4XR2A 3RHUA 1TKEA 2ZTGA 4XR1A 1ECRA 2ZZFA 1WNUA 1V7OA 1TJEA 4XR0A 3WQZA
chains in the Genus database with same CATH topology
1TKYA 1V4PA 2ZZEA 2ZZGA 1QF6A 4XR3A 2I05A 3RFNA 1TKGA 1WXOA 2I06A 2EWJA 4XR2A 3RHUA 1TKEA 2ZTGA 4XR1A 1ECRA 2ZZFA 1WNUA 1V7OA 1TJEA 4XR0A 3WQZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EWJ A;  4XR2 A;  2I06 A;  4XR3 A;  4XR1 A;  4XR0 A;  1ECR A;  2I05 A; 
#chains in the Genus database with same CATH topology
 1TKY A;  1V4P A;  2ZZE A;  2ZZG A;  1QF6 A;  4XR3 A;  2I05 A;  3RFN A;  1TKG A;  1WXO A;  2I06 A;  2EWJ A;  4XR2 A;  3RHU A;  1TKE A;  2ZTG A;  4XR1 A;  1ECR A;  2ZZF A;  1WNU A;  1V7O A;  1TJE A;  4XR0 A;  3WQZ A; 
#chains in the Genus database with same CATH homology
 1TKY A;  1V4P A;  2ZZE A;  2ZZG A;  1QF6 A;  4XR3 A;  2I05 A;  3RFN A;  1TKG A;  1WXO A;  2I06 A;  2EWJ A;  4XR2 A;  3RHU A;  1TKE A;  2ZTG A;  4XR1 A;  1ECR A;  2ZZF A;  1WNU A;  1V7O A;  1TJE A;  4XR0 A;  3WQZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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