2I1SA

Crystal structure of protein of unknown function mm3350 from methanosarcina mazei go1
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
185
structure length
178
Chain Sequence
TFEKVYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWEDYHLHEFEMVNPKTGMLDKIGAEGDPLVSEKKAKLSDYFTLENKEALYTYDFGDNWQVKVRLEKILPRKEGVEYPICTAGKRAAVPEDSGGVWGYEEMLEVLKDSEHEEYEDTVLWLGDDFDPEYFDPKDVSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of hypothetical protein MM_3350 from Methanosarcina mazei Go1
rcsb
molecule tags Structural genomics, unknown function
source organism Methanosarcina mazei
molecule keywords Hypothetical protein
total genus 46
structure length 178
sequence length 185
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07929 PRiA4_ORF3 Plasmid pRiA4b ORF-3-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.30 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A MM3350-like 2i1sA00
2I1SA
chains in the Genus database with same CATH superfamily
3ONHA 1FKAD 1HNWD 5LL6S 4DR6D 4JI4D 4II2A 1IBMD 4DV2D 4II3A 4X66D 2JANA 3OTOD 1H3EA 2F4VD 4KHPD 1VIOA 3T1HD 4B3RD 1IBKD 2ISTA 4LF6D 1N32D 4JI7D 4OX9D 1N33D 2VQED 1Y8RB 4LF5D 1DM9A 3HP7A 4GKJD 3DH3A 1N36D 3ONGA 1Y8QB 1KSVA 3KBGA 5IT9E 2UXCD 4B3SD 5KNLA 4W5VB 4DV5D 4DR3D 1HR0D 1XNQD 4JI1D 3JAME 4DV4D 4DV3D 2HHHD 4DR1D 3KYDB 2I1SA 2UUCD 3CMMA 4DR4D 2UXBD 2E5LD 4JI3D 4DR2D 4LF7D 2ZTBA 3T1YD 1J5ED 1KSLA 4LFCD 4NNJA 4X65D 5FLXE 4DV7D 4AQYD 2UXDD 2K6PA 1I94D 2LQ7A 5FQ2B 4DV6D 1C05A 1C06A 5IWAD 5LMUD 4JI2D 4NXND 4LFBD 2UUAD 4DUZD 1H3FA 4LGTA 3FN1A 2ZM6D 4DUYD 4DR5D 4LFAD 2UU9D 4JI5D 1JH3A 4B3MD 3J7AF 4YY3D 1XNRD 1KSKA 4DV1D 5BR8D 4GKKD 4OUDA 1Y8XB 4JI8D 4X64D 5LMND 2UUBD 4JYAD 1XMQD 2VQFD 4B3TD 1HNZD 4JI6D 5A2QE 4YHHD 4LF9D 4DR7D 2KTLA 4X62D 1XMOD 3J81E 4LF8D 1FJGD 2NVUB 4DV0D 4JI0D 1IBLD 1HNXD 4NXMD 4LF4D 4JV5D 3J80E 4K0KD 3KYCB 1N34D 1P9KA
chains in the Genus database with same CATH topology
2I1SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I1S A; 
#chains in the Genus database with same CATH topology
 3ONH A;  1FKA D;  1HNW D;  5LL6 S;  4DR6 D;  4JI4 D;  4II2 A;  1IBM D;  4DV2 D;  4II3 A;  4X66 D;  2JAN A;  3OTO D;  1H3E A;  2F4V D;  4KHP D;  1VIO A;  3T1H D;  4B3R D;  1IBK D;  2IST A;  4LF6 D;  1N32 D;  4JI7 D;  4OX9 D;  1N33 D;  2VQE D;  1Y8R B;  4LF5 D;  1DM9 A;  3HP7 A;  4GKJ D;  3DH3 A;  1N36 D;  3ONG A;  1Y8Q B;  1KSV A;  3KBG A;  5IT9 E;  2UXC D;  4B3S D;  5KNL A;  4W5V B;  4DV5 D;  4DR3 D;  1HR0 D;  1XNQ D;  4JI1 D;  3JAM E;  4DV4 D;  4DV3 D;  2HHH D;  4DR1 D;  3KYD B;  2I1S A;  2UUC D;  3CMM A;  4DR4 D;  2UXB D;  2E5L D;  4JI3 D;  4DR2 D;  4LF7 D;  2ZTB A;  3T1Y D;  1J5E D;  1KSL A;  4LFC D;  4NNJ A;  4X65 D;  5FLX E;  4DV7 D;  4AQY D;  2UXD D;  2K6P A;  1I94 D;  2LQ7 A;  5FQ2 B;  4DV6 D;  1C05 A;  1C06 A;  5IWA D;  5LMU D;  4JI2 D;  4NXN D;  4LFB D;  2UUA D;  4DUZ D;  1H3F A;  4LGT A;  3FN1 A;  2ZM6 D;  4DUY D;  4DR5 D;  4LFA D;  2UU9 D;  4JI5 D;  1JH3 A;  4B3M D;  3J7A F;  4YY3 D;  1XNR D;  1KSK A;  4DV1 D;  5BR8 D;  4GKK D;  4OUD A;  1Y8X B;  4JI8 D;  4X64 D;  5LMN D;  2UUB D;  4JYA D;  1XMQ D;  2VQF D;  4B3T D;  1HNZ D;  4JI6 D;  5A2Q E;  4YHH D;  4LF9 D;  4DR7 D;  2KTL A;  4X62 D;  1XMO D;  3J81 E;  4LF8 D;  1FJG D;  2NVU B;  4DV0 D;  4JI0 D;  1IBL D;  1HNX D;  4NXM D;  4LF4 D;  4JV5 D;  3J80 E;  4K0K D;  3KYC B;  1N34 D;  1P9K A; 
#chains in the Genus database with same CATH homology
 2I1S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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