2I2QA

Fission yeast cofilin
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
122
structure length
122
Chain Sequence
SFSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKDCRYAIYDFEFNLGEGVRNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Actin-binding protein
molecule keywords Cofilin
publication title Mechanism of Actin Filament Turnover by Severing and Nucleation at Different Concentrations of ADF/Cofilin.
pubmed doi rcsb
source organism Schizosaccharomyces pombe
total genus 35
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2006-08-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2i2qA00
1JHWA 1RGIG 1V6FA 1T3YA 3EH1A 1NLVG 2D8BA 1PD1A 3EGDA 5KYYA 2KVKA 1J72A 3FG6A 2LJ8A 1NMDG 1D0NA 3EGXA 3A5OS 3FG7A 1D4XG 3Q2BA 4PKHB 2FF6G 5A1MA 1DEJS 4JD2H 4PKGG 1YVNG 1SVRA 1TMWA 1SVQA 2W0IA 1P8XA 1WM4A 1UDMA 1AHQA 1SVYA 2NUPA 1T44G 1T3XA 3EFOB 3EG9A 5FAFA 5KYWA 1Q8XA 1C0FS 2VILA 5IVUA 1M4JA 1F7SA 5KYYB 3EGDB 1PD0A 1VKKA 1EQYS 2FGHA 4BEX1 2HD7A 2I2QA 3EGXB 4CBUG 1COFA 4CBXG 5L6WC 1Q8GA 1CNUA 1X67A 1ESVS 1NPHA 3A5LS 2MP4A 2LXXA 2NUTA 1NM1G 2FH3A 5KYXA 1M2VA 3FFNA 2FH4A 3FFKA 1HQZ1 2NUPB 2VACA 3EG9B 4KEFA 5KYWB 1VFQA 1T2LA 2MOTA 2FH1A 5KYUA 1H1VG 1YAGG 1M2OA 1PCXA 2FF3A 2VIKA 2L72A 4KEEA 5DD2A 3L50A 1MDUA 1TVJA 3CJBG 1WFSA 1KCQA 2MV2A 2XF1A 2NUTB 1WNJA 4Z94G 5HVKD 1AK6A 5KYXB 3A5NS 1M2VB 1P8ZG 4KEDA 1C0GS 5HVKB 4S10C 4LIZA 3CJCG 3CIPG 1AK7A 5FAEA 5KYUB 4PKIG 2FH2A 2XFAA 3EFOA 3CI5G 3EH2A 5KYNA 3A5MS 2LLFA 1QPVA 2QTVA 3DAWB 4CBWG 1CFYA 3TU5B
chains in the Genus database with same CATH superfamily
1JHWA 1RGIG 1V6FA 1T3YA 3EH1A 1NLVG 2D8BA 1PD1A 3EGDA 5KYYA 2KVKA 1J72A 3FG6A 2LJ8A 1NMDG 1D0NA 3EGXA 3A5OS 3FG7A 1D4XG 3Q2BA 4PKHB 2FF6G 5A1MA 1DEJS 4JD2H 4PKGG 1YVNG 1SVRA 1TMWA 1SVQA 2W0IA 1P8XA 1WM4A 1UDMA 1AHQA 1SVYA 2NUPA 1T44G 1T3XA 3EFOB 3EG9A 5FAFA 5KYWA 1Q8XA 1C0FS 2VILA 5IVUA 1M4JA 1F7SA 5KYYB 3EGDB 1PD0A 1VKKA 1EQYS 2FGHA 4BEX1 2HD7A 2I2QA 3EGXB 4CBUG 1COFA 4CBXG 5L6WC 1Q8GA 1CNUA 1X67A 1ESVS 1NPHA 3A5LS 2MP4A 2LXXA 2NUTA 1NM1G 2FH3A 5KYXA 1M2VA 3FFNA 2FH4A 3FFKA 1HQZ1 2NUPB 2VACA 3EG9B 4KEFA 5KYWB 1VFQA 1T2LA 2MOTA 2FH1A 5KYUA 1H1VG 1YAGG 1M2OA 1PCXA 2FF3A 2VIKA 2L72A 4KEEA 5DD2A 3L50A 1MDUA 1TVJA 3CJBG 1WFSA 1KCQA 2MV2A 2XF1A 2NUTB 1WNJA 4Z94G 5HVKD 1AK6A 5KYXB 3A5NS 1M2VB 1P8ZG 4KEDA 1C0GS 5HVKB 4S10C 4LIZA 3CJCG 3CIPG 1AK7A 5FAEA 5KYUB 4PKIG 2FH2A 2XFAA 3DA7A 3EFOA 3CI5G 3EH2A 5KYNA 3A5MS 2LLFA 1QPVA 2QTVA 3DAWB 4CBWG 1CFYA 3TU5B
chains in the Genus database with same CATH topology
1JHWA 1RGIG 1V6FA 1T3YA 3EH1A 1NLVG 2D8BA 1PD1A 3EGDA 5KYYA 2KVKA 1J72A 3FG6A 2LJ8A 1NMDG 1D0NA 3EGXA 3A5OS 3FG7A 1D4XG 3Q2BA 4PKHB 2FF6G 5A1MA 1DEJS 4JD2H 4PKGG 1YVNG 1SVRA 1TMWA 1SVQA 2W0IA 1P8XA 1WM4A 1UDMA 1AHQA 1SVYA 2NUPA 1T44G 1T3XA 3EFOB 3EG9A 5FAFA 5KYWA 1Q8XA 1C0FS 2VILA 5IVUA 1M4JA 1F7SA 5KYYB 3EGDB 1PD0A 1VKKA 1EQYS 2FGHA 4BEX1 2HD7A 2I2QA 3EGXB 4CBUG 1COFA 4CBXG 5L6WC 1Q8GA 1CNUA 1X67A 1ESVS 1NPHA 3A5LS 2MP4A 2LXXA 2NUTA 1NM1G 2FH3A 5KYXA 1M2VA 3FFNA 2FH4A 3FFKA 1HQZ1 2NUPB 2VACA 3EG9B 4KEFA 5KYWB 1VFQA 1T2LA 2MOTA 2FH1A 5KYUA 1H1VG 1YAGG 1M2OA 1PCXA 2FF3A 2VIKA 2L72A 4KEEA 5DD2A 3L50A 1MDUA 1TVJA 3CJBG 1WFSA 1KCQA 2MV2A 2XF1A 2NUTB 1WNJA 4Z94G 5HVKD 1AK6A 5KYXB 3A5NS 1M2VB 1P8ZG 4KEDA 1C0GS 5HVKB 4S10C 4LIZA 3CJCG 3CIPG 1AK7A 5FAEA 5KYUB 4PKIG 2FH2A 2XFAA 3DA7A 3EFOA 3CI5G 3EH2A 5KYNA 3A5MS 2LLFA 1QPVA 2QTVA 3DAWB 4CBWG 1CFYA 3TU5B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JHW A;  1RGI G;  1V6F A;  1T3Y A;  3EH1 A;  1NLV G;  2D8B A;  1PD1 A;  3EGD A;  5KYY A;  2KVK A;  1J72 A;  3FG6 A;  2LJ8 A;  1NMD G;  1D0N A;  3EGX A;  3A5O S;  3FG7 A;  1D4X G;  3Q2B A;  4PKH B;  2FF6 G;  5A1M A;  1DEJ S;  4JD2 H;  4PKG G;  1YVN G;  1SVR A;  1TMW A;  1SVQ A;  2W0I A;  1P8X A;  1WM4 A;  1UDM A;  1AHQ A;  1SVY A;  2NUP A;  1T44 G;  1T3X A;  3EFO B;  3EG9 A;  5FAF A;  5KYW A;  1Q8X A;  1C0F S;  2VIL A;  5IVU A;  1M4J A;  1F7S A;  5KYY B;  3EGD B;  1PD0 A;  1VKK A;  1EQY S;  2FGH A;  4BEX 1;  2HD7 A;  2I2Q A;  3EGX B;  4CBU G;  1COF A;  4CBX G;  5L6W C;  1Q8G A;  1CNU A;  1X67 A;  1ESV S;  1NPH A;  3A5L S;  2MP4 A;  2LXX A;  2NUT A;  1NM1 G;  2FH3 A;  5KYX A;  1M2V A;  3FFN A;  2FH4 A;  3FFK A;  1HQZ 1;  2NUP B;  2VAC A;  3EG9 B;  4KEF A;  5KYW B;  1VFQ A;  1T2L A;  2MOT A;  2FH1 A;  5KYU A;  1H1V G;  1YAG G;  1M2O A;  1PCX A;  2FF3 A;  2VIK A;  2L72 A;  4KEE A;  5DD2 A;  3L50 A;  1MDU A;  1TVJ A;  3CJB G;  1WFS A;  1KCQ A;  2MV2 A;  2XF1 A;  2NUT B;  1WNJ A;  4Z94 G;  5HVK D;  1AK6 A;  5KYX B;  3A5N S;  1M2V B;  1P8Z G;  4KED A;  1C0G S;  5HVK B;  4S10 C;  4LIZ A;  3CJC G;  3CIP G;  1AK7 A;  5FAE A;  5KYU B;  4PKI G;  2FH2 A;  2XFA A;  3EFO A;  3CI5 G;  3EH2 A;  5KYN A;  3A5M S;  2LLF A;  1QPV A;  2QTV A;  3DAW B;  4CBW G;  1CFY A;  3TU5 B; 
#chains in the Genus database with same CATH topology
 1JHW A;  1RGI G;  1V6F A;  1T3Y A;  3EH1 A;  1NLV G;  2D8B A;  1PD1 A;  3EGD A;  5KYY A;  2KVK A;  1J72 A;  3FG6 A;  2LJ8 A;  1NMD G;  1D0N A;  3EGX A;  3A5O S;  3FG7 A;  1D4X G;  3Q2B A;  4PKH B;  2FF6 G;  5A1M A;  1DEJ S;  4JD2 H;  4PKG G;  1YVN G;  1SVR A;  1TMW A;  1SVQ A;  2W0I A;  1P8X A;  1WM4 A;  1UDM A;  1AHQ A;  1SVY A;  2NUP A;  1T44 G;  1T3X A;  3EFO B;  3EG9 A;  5FAF A;  5KYW A;  1Q8X A;  1C0F S;  2VIL A;  5IVU A;  1M4J A;  1F7S A;  5KYY B;  3EGD B;  1PD0 A;  1VKK A;  1EQY S;  2FGH A;  4BEX 1;  2HD7 A;  2I2Q A;  3EGX B;  4CBU G;  1COF A;  4CBX G;  5L6W C;  1Q8G A;  1CNU A;  1X67 A;  1ESV S;  1NPH A;  3A5L S;  2MP4 A;  2LXX A;  2NUT A;  1NM1 G;  2FH3 A;  5KYX A;  1M2V A;  3FFN A;  2FH4 A;  3FFK A;  1HQZ 1;  2NUP B;  2VAC A;  3EG9 B;  4KEF A;  5KYW B;  1VFQ A;  1T2L A;  2MOT A;  2FH1 A;  5KYU A;  1H1V G;  1YAG G;  1M2O A;  1PCX A;  2FF3 A;  2VIK A;  2L72 A;  4KEE A;  5DD2 A;  3L50 A;  1MDU A;  1TVJ A;  3CJB G;  1WFS A;  1KCQ A;  2MV2 A;  2XF1 A;  2NUT B;  1WNJ A;  4Z94 G;  5HVK D;  1AK6 A;  5KYX B;  3A5N S;  1M2V B;  1P8Z G;  4KED A;  1C0G S;  5HVK B;  4S10 C;  4LIZ A;  3CJC G;  3CIP G;  1AK7 A;  5FAE A;  5KYU B;  4PKI G;  2FH2 A;  2XFA A;  3DA7 A;  3EFO A;  3CI5 G;  3EH2 A;  5KYN A;  3A5M S;  2LLF A;  1QPV A;  2QTV A;  3DAW B;  4CBW G;  1CFY A;  3TU5 B; 
#chains in the Genus database with same CATH homology
 1JHW A;  1RGI G;  1V6F A;  1T3Y A;  3EH1 A;  1NLV G;  2D8B A;  1PD1 A;  3EGD A;  5KYY A;  2KVK A;  1J72 A;  3FG6 A;  2LJ8 A;  1NMD G;  1D0N A;  3EGX A;  3A5O S;  3FG7 A;  1D4X G;  3Q2B A;  4PKH B;  2FF6 G;  5A1M A;  1DEJ S;  4JD2 H;  4PKG G;  1YVN G;  1SVR A;  1TMW A;  1SVQ A;  2W0I A;  1P8X A;  1WM4 A;  1UDM A;  1AHQ A;  1SVY A;  2NUP A;  1T44 G;  1T3X A;  3EFO B;  3EG9 A;  5FAF A;  5KYW A;  1Q8X A;  1C0F S;  2VIL A;  5IVU A;  1M4J A;  1F7S A;  5KYY B;  3EGD B;  1PD0 A;  1VKK A;  1EQY S;  2FGH A;  4BEX 1;  2HD7 A;  2I2Q A;  3EGX B;  4CBU G;  1COF A;  4CBX G;  5L6W C;  1Q8G A;  1CNU A;  1X67 A;  1ESV S;  1NPH A;  3A5L S;  2MP4 A;  2LXX A;  2NUT A;  1NM1 G;  2FH3 A;  5KYX A;  1M2V A;  3FFN A;  2FH4 A;  3FFK A;  1HQZ 1;  2NUP B;  2VAC A;  3EG9 B;  4KEF A;  5KYW B;  1VFQ A;  1T2L A;  2MOT A;  2FH1 A;  5KYU A;  1H1V G;  1YAG G;  1M2O A;  1PCX A;  2FF3 A;  2VIK A;  2L72 A;  4KEE A;  5DD2 A;  3L50 A;  1MDU A;  1TVJ A;  3CJB G;  1WFS A;  1KCQ A;  2MV2 A;  2XF1 A;  2NUT B;  1WNJ A;  4Z94 G;  5HVK D;  1AK6 A;  5KYX B;  3A5N S;  1M2V B;  1P8Z G;  4KED A;  1C0G S;  5HVK B;  4S10 C;  4LIZ A;  3CJC G;  3CIP G;  1AK7 A;  5FAE A;  5KYU B;  4PKI G;  2FH2 A;  2XFA A;  3DA7 A;  3EFO A;  3CI5 G;  3EH2 A;  5KYN A;  3A5M S;  2LLF A;  1QPV A;  2QTV A;  3DAW B;  4CBW G;  1CFY A;  3TU5 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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