2I3QA

Q44v mutant of homing endonuclease i-crei
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQIAPNQSYKFKHQLSLTFVVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*AP*CP*GP*TP*GP*AP*GP*TP*CP*AP*
publication title Homing endonuclease I-CreI derivatives with novel DNA target specificities.
pubmed doi rcsb
source organism Chlamydomonas reinhardtii
total genus 45
structure length 152
sequence length 152
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2006-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 2i3qA00
4UT0A 2VBJA 4UN8G 3QQYA 5E5OA 1VDEA 4D6NA 2VBNA 2CW8A 5E67A 4AAEA 2XE0A 2AB5A 3MIPA 2VBLA 1MOWA 2VS8A 5A0MA 1P8KZ 4D6OA 1G9YA 2VBOA 3MXAA 3MXBB 1T9IA 3C0WA 1N3EA 4AADA 4UN9G 3E54A 4YISA 3UVFA 2VS7A 3MX9A 4UN7A 5A77A 1G9ZA 4AAFA 4AQXA 4UNBA 2VBJB 1U0DA 1DQ3A 1B24A 4UN7G 4Z20A 2DCHX 4AAGA 2I3QA 4LOXA 2VBNB 1U0CA 5E63A 1AF5A 2CW7A 5A72A 1DFAA 2XE0B 4AQUA 4UNAA 5A0MB 3FD2A 4YITA 4Z1XA 1N3FA 3HYIA 2VBOB 1JVAA 1T9JA 1LWSA 1M5XA 5AKMA 5A78A 1EF0A 3EH8A 1LWTA 2EX5A 1UM2A 4UN8A 3OORA 4EFJA 2I3PA 2FLDA 2VBLB 4LQ0A 1R7MA 2O7MA 5A74A 1BP7A 3MISA 3HYJA 4Z1ZA 4UNCA 5A0WA 5E5SA 5AKFA 3C0XA 5AKNA 3OOLA 3KO2A 4YHXA 3MXBA 2QOJZ 3R7PA 5AK9A 4AABA 4UN9A
chains in the Genus database with same CATH superfamily
4UT0A 2VBJA 4UN8G 3QQYA 5E5OA 1VDEA 4D6NA 2VBNA 2CW8A 5E67A 4AAEA 2XE0A 2AB5A 3MIPA 2VBLA 1MOWA 2VS8A 5A0MA 1P8KZ 4D6OA 1G9YA 2VBOA 3MXAA 3MXBB 1T9IA 3C0WA 1N3EA 4AADA 4UN9G 3E54A 4YISA 3UVFA 2VS7A 3MX9A 4UN7A 5A77A 1G9ZA 4AAFA 4AQXA 4UNBA 2VBJB 1U0DA 1DQ3A 1B24A 4UN7G 4Z20A 2DCHX 4AAGA 2I3QA 4LOXA 2VBNB 1U0CA 5E63A 1AF5A 2CW7A 5A72A 1DFAA 2XE0B 4AQUA 4UNAA 5A0MB 3FD2A 4YITA 4Z1XA 1N3FA 3HYIA 2VBOB 2F4LA 1JVAA 1T9JA 1LWSA 1M5XA 5AKMA 5A78A 1EF0A 3EH8A 1LWTA 2EX5A 1UM2A 4UN8A 3OORA 4EFJA 2I3PA 2FLDA 2VBLB 4LQ0A 1R7MA 2O7MA 5A74A 1BP7A 3MISA 3HYJA 4Z1ZA 4UNCA 5A0WA 5E5SA 5AKFA 3C0XA 5AKNA 3OOLA 3KO2A 4YHXA 3MXBA 2QOJZ 3R7PA 5AK9A 4AABA 4UN9A 4KZSA
chains in the Genus database with same CATH topology
4UT0A 2VBJA 4UN8G 3QQYA 5E5OA 1VDEA 4D6NA 2VBNA 2CW8A 5E67A 4AAEA 2XE0A 2AB5A 3MIPA 2VBLA 1MOWA 2VS8A 5A0MA 1P8KZ 4D6OA 1G9YA 2VBOA 3MXAA 3MXBB 1T9IA 3C0WA 1N3EA 4AADA 4UN9G 3E54A 4YISA 3UVFA 2VS7A 3MX9A 4UN7A 5A77A 1G9ZA 4AAFA 4AQXA 4UNBA 2VBJB 1U0DA 1DQ3A 1B24A 4UN7G 4Z20A 2DCHX 4AAGA 2I3QA 4LOXA 2VBNB 1U0CA 5E63A 1AF5A 2CW7A 5A72A 1DFAA 2XE0B 4AQUA 4UNAA 5A0MB 3FD2A 4YITA 4Z1XA 1N3FA 3HYIA 2VBOB 1JVAA 1T9JA 1LWSA 1M5XA 5AKMA 5A78A 1EF0A 3EH8A 1LWTA 2EX5A 1UM2A 4UN8A 3OORA 4EFJA 2I3PA 2FLDA 2VBLB 4LQ0A 1R7MA 2O7MA 5A74A 1BP7A 3MISA 3HYJA 4Z1ZA 4UNCA 5A0WA 5E5SA 5AKFA 3C0XA 5AKNA 3OOLA 3KO2A 4YHXA 3MXBA 2QOJZ 3R7PA 5AK9A 4AABA 4UN9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UT0 A;  2VBJ A;  4UN8 G;  3QQY A;  5E5O A;  1VDE A;  4D6N A;  2VBN A;  2CW8 A;  5E67 A;  4AAE A;  2XE0 A;  2AB5 A;  3MIP A;  2VBL A;  1MOW A;  2VS8 A;  5A0M A;  1P8K Z;  4D6O A;  1G9Y A;  2VBO A;  3MXA A;  3MXB B;  1T9I A;  3C0W A;  1N3E A;  4AAD A;  4UN9 G;  3E54 A;  4YIS A;  3UVF A;  2VS7 A;  3MX9 A;  4UN7 A;  5A77 A;  1G9Z A;  4AAF A;  4AQX A;  4UNB A;  2VBJ B;  1U0D A;  1DQ3 A;  1B24 A;  4UN7 G;  4Z20 A;  2DCH X;  4AAG A;  2I3Q A;  4LOX A;  2VBN B;  1U0C A;  5E63 A;  1AF5 A;  2CW7 A;  5A72 A;  1DFA A;  2XE0 B;  4AQU A;  4UNA A;  5A0M B;  3FD2 A;  4YIT A;  4Z1X A;  1N3F A;  3HYI A;  2VBO B;  1JVA A;  1T9J A;  1LWS A;  1M5X A;  5AKM A;  5A78 A;  1EF0 A;  3EH8 A;  1LWT A;  2EX5 A;  1UM2 A;  4UN8 A;  3OOR A;  4EFJ A;  2I3P A;  2FLD A;  2VBL B;  4LQ0 A;  1R7M A;  2O7M A;  5A74 A;  1BP7 A;  3MIS A;  3HYJ A;  4Z1Z A;  4UNC A;  5A0W A;  5E5S A;  5AKF A;  3C0X A;  5AKN A;  3OOL A;  3KO2 A;  4YHX A;  3MXB A;  2QOJ Z;  3R7P A;  5AK9 A;  4AAB A;  4UN9 A; 
#chains in the Genus database with same CATH topology
 4UT0 A;  2VBJ A;  4UN8 G;  3QQY A;  5E5O A;  1VDE A;  4D6N A;  2VBN A;  2CW8 A;  5E67 A;  4AAE A;  2XE0 A;  2AB5 A;  3MIP A;  2VBL A;  1MOW A;  2VS8 A;  5A0M A;  1P8K Z;  4D6O A;  1G9Y A;  2VBO A;  3MXA A;  3MXB B;  1T9I A;  3C0W A;  1N3E A;  4AAD A;  4UN9 G;  3E54 A;  4YIS A;  3UVF A;  2VS7 A;  3MX9 A;  4UN7 A;  5A77 A;  1G9Z A;  4AAF A;  4AQX A;  4UNB A;  2VBJ B;  1U0D A;  1DQ3 A;  1B24 A;  4UN7 G;  4Z20 A;  2DCH X;  4AAG A;  2I3Q A;  4LOX A;  2VBN B;  1U0C A;  5E63 A;  1AF5 A;  2CW7 A;  5A72 A;  1DFA A;  2XE0 B;  4AQU A;  4UNA A;  5A0M B;  3FD2 A;  4YIT A;  4Z1X A;  1N3F A;  3HYI A;  2VBO B;  2F4L A;  1JVA A;  1T9J A;  1LWS A;  1M5X A;  5AKM A;  5A78 A;  1EF0 A;  3EH8 A;  1LWT A;  2EX5 A;  1UM2 A;  4UN8 A;  3OOR A;  4EFJ A;  2I3P A;  2FLD A;  2VBL B;  4LQ0 A;  1R7M A;  2O7M A;  5A74 A;  1BP7 A;  3MIS A;  3HYJ A;  4Z1Z A;  4UNC A;  5A0W A;  5E5S A;  5AKF A;  3C0X A;  5AKN A;  3OOL A;  3KO2 A;  4YHX A;  3MXB A;  2QOJ Z;  3R7P A;  5AK9 A;  4AAB A;  4UN9 A;  4KZS A; 
#chains in the Genus database with same CATH homology
 4UT0 A;  2VBJ A;  4UN8 G;  3QQY A;  5E5O A;  1VDE A;  4D6N A;  2VBN A;  2CW8 A;  5E67 A;  4AAE A;  2XE0 A;  2AB5 A;  3MIP A;  2VBL A;  1MOW A;  2VS8 A;  5A0M A;  1P8K Z;  4D6O A;  1G9Y A;  2VBO A;  3MXA A;  3MXB B;  1T9I A;  3C0W A;  1N3E A;  4AAD A;  4UN9 G;  3E54 A;  4YIS A;  3UVF A;  2VS7 A;  3MX9 A;  4UN7 A;  5A77 A;  1G9Z A;  4AAF A;  4AQX A;  4UNB A;  2VBJ B;  1U0D A;  1DQ3 A;  1B24 A;  4UN7 G;  4Z20 A;  2DCH X;  4AAG A;  2I3Q A;  4LOX A;  2VBN B;  1U0C A;  5E63 A;  1AF5 A;  2CW7 A;  5A72 A;  1DFA A;  2XE0 B;  4AQU A;  4UNA A;  5A0M B;  3FD2 A;  4YIT A;  4Z1X A;  1N3F A;  3HYI A;  2VBO B;  1JVA A;  1T9J A;  1LWS A;  1M5X A;  5AKM A;  5A78 A;  1EF0 A;  3EH8 A;  1LWT A;  2EX5 A;  1UM2 A;  4UN8 A;  3OOR A;  4EFJ A;  2I3P A;  2FLD A;  2VBL B;  4LQ0 A;  1R7M A;  2O7M A;  5A74 A;  1BP7 A;  3MIS A;  3HYJ A;  4Z1Z A;  4UNC A;  5A0W A;  5E5S A;  5AKF A;  3C0X A;  5AKN A;  3OOL A;  3KO2 A;  4YHX A;  3MXB A;  2QOJ Z;  3R7P A;  5AK9 A;  4AAB A;  4UN9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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