2I51A

Crystal structure of a pyridoxamine 5'-phosphate oxidase-related, fmn binding protein (npun_f5749) from nostoc punctiforme pcc 73102 at 1.40 a resolution
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
194
structure length
194
Chain Sequence
MSLAPWRGAIAHALHRNRSLVYARYLQLATVQPNGRPANRTLVFRGFLEDTNQLRFITDTRSAKADQIQQQPWAEICWYFPNTREQFRMAGDLTLISSDDSHQDLQPARIAMWQELSDAARLQFGWPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRGEPQNRWLYHRNDQQEWSSEAINP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Uncharacterized conserved protein of COG5135 (ZP_00109616.1) from Nostoc punctiforme PCC 73102 at 1.40 A resolution
rcsb
molecule tags Flavoprotein
source organism Nostoc punctiforme
molecule keywords Uncharacterized conserved protein of COG5135
total genus 52
structure length 194
sequence length 194
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12766 Pyridox_oxase_2 Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2i51A00
4R82A 1G78A 1YLNA 1USCA 3BPKA 3F7EA 3FGEA 3CP3A 3DNHA 3EC6A 4IRAA 4HX6A 2FHQA 4QVBA 2VPAA 3ZODA 1DNLA 3KYFA 2R6VA 1RZ1A 1RFEA 2OL5A 2R0XA 1YOAA 3IN6A 1VL7A 1XXOA 2Q9KA 5ESCA 4YBNA 5BNCA 1W9AA 1T9MA 3DB0A 3BA3A 3DMBA 4YWNA 3A20A 4HMVA 4XJ2A 2A2JA 3CB0A 1I0RA 3U35A 3K87A 2ASFA 2HTDA 1W3QA 2D36A 4HMTA 4L82A 1AXJA 2PTFA 3U0IA 1WV4A 2X1KA 1WLIA 2D5MA 4HMUA 2HHZA 1XHNA 2ARZA 1WLKA 2RE7A 2ECRA 3KYGA 3K86A 2ED4A 2X1JA 3HY8A 3R5YA 2AQ6A 3R5LA 3SWJA 2RDEA 3ZOGA 2E83A 3GASA 5JABA 1W3RA 2FG9A 1TY9A 3A6RA 4HMXA 3E4VA 3ZOCA 1CI0A 3A6QA 1G79A 2HQ9A 4N7RC 1JNWA 1WGBA 1NRGA 2I51A 1I0SA 3K88A 3FKHA 3HMZA 3R5RA 5CHOA 4HMSA 3ZOEA 1FLMA 1W3OA 3VY2A 2NR4A 3VYAA 2ECUA 1RZ0A 3H96A 1G76A 4Z85A 2GJGA 2I02A 1W3PA 3AMFA 3R5PA 2IG6A 2IMLA 3B5MA 3R5WA 4Y9IA 3ZOHA 5CHEC 3VY5A 1EJEA 3RH7A 3U34A 4XHYA 1Y30A 2QEAA 2IABA 4HMWA 2QCKA 3AWHA 3PFTA 3BNKA 3R5ZA 3ZOFA 3TGVA 1G77A 2FURA 2HQ7A 2OU5A 3U5WA 2D38A 4F07A 2HTIA 3NFWA 4ZKYA 2D37A 1USFA
chains in the Genus database with same CATH superfamily
4R82A 1G78A 1YLNA 1USCA 3BPKA 3F7EA 4HKHA 3FGEA 3CP3A 3DNHA 3EC6A 4IRAA 4HX6A 2FHQA 4QVBA 2VPAA 3ZODA 1DNLA 3KYFA 2R6VA 1RZ1A 1RFEA 2OL5A 2R0XA 1YOAA 3IN6A 1VL7A 1XXOA 2Q9KA 5ESCA 4YBNA 5BNCA 1W9AA 1T9MA 3DB0A 3BA3A 3DMBA 3EAAA 4YWNA 3A20A 4HMVA 4XJ2A 2A2JA 3CB0A 1I0RA 3U35A 1Y12A 3K87A 2ASFA 2HTDA 1W3QA 2D36A 4HMTA 4L82A 3HE1A 1AXJA 2PTFA 3U0IA 1WV4A 2X1KA 1WLIA 2D5MA 4HMUA 2HHZA 1XHNA 2ARZA 4TV4A 1WLKA 2RE7A 2ECRA 3KYGA 3K86A 2ED4A 2X1JA 3HY8A 3R5YA 2AQ6A 3R5LA 3SWJA 2RDEA 3ZOGA 2E83A 3GASA 5JABA 1W3RA 2FG9A 1TY9A 3A6RA 4HMXA 3E4VA 3ZOCA 1CI0A 2K4QA 3A6QA 1G79A 2HQ9A 4N7RC 1JNWA 1WGBA 1NRGA 2I51A 1I0SA 3K88A 4W64A 3FKHA 3HMZA 3R5RA 5CHOA 4HMSA 3ZOEA 1FLMA 1W3OA 3VY2A 2NR4A 3VYAA 2ECUA 1RZ0A 3H96A 2L1TA 1G76A 4Z85A 2GJGA 2I02A 1W3PA 3AMFA 3R5PA 2IG6A 2IMLA 3B5MA 3R5WA 4Y9IA 3ZOHA 5CHEC 3VY5A 1EJEA 3RH7A 3U34A 2P5ZX 4XHYA 4MTKA 1Y30A 2QEAA 2IABA 4UHVA 4HMWA 2QCKA 3AWHA 3V4HA 3PFTA 2GUJA 3BNKA 3R5ZA 3ZOFA 3TGVA 1G77A 2FURA 2HQ7A 2OU5A 3U5WA 2D38A 4F07A 2HTIA 3NFWA 4ZKYA 2D37A 1USFA
chains in the Genus database with same CATH topology
4R82A 1G78A 1YLNA 1USCA 3BPKA 3F7EA 3FGEA 3CP3A 3DNHA 3EC6A 4IRAA 4HX6A 2FHQA 4QVBA 2VPAA 3ZODA 1DNLA 3KYFA 2R6VA 1RZ1A 1RFEA 2OL5A 2R0XA 1YOAA 3IN6A 1VL7A 1XXOA 2Q9KA 5ESCA 4YBNA 5BNCA 1W9AA 1T9MA 3DB0A 3BA3A 3DMBA 4YWNA 3A20A 4HMVA 4XJ2A 2A2JA 3CB0A 1I0RA 3U35A 3K87A 2ASFA 2HTDA 1W3QA 2D36A 4HMTA 4L82A 1AXJA 2PTFA 3U0IA 1WV4A 2X1KA 1WLIA 2D5MA 4HMUA 2HHZA 1XHNA 2ARZA 1WLKA 2RE7A 2ECRA 3KYGA 3K86A 2ED4A 2X1JA 3HY8A 3R5YA 2AQ6A 3R5LA 3SWJA 2RDEA 3ZOGA 2E83A 3GASA 5JABA 1W3RA 2FG9A 1TY9A 3A6RA 4HMXA 3E4VA 3ZOCA 1CI0A 3A6QA 1G79A 2HQ9A 4N7RC 1JNWA 1WGBA 1NRGA 2I51A 1I0SA 3K88A 3FKHA 3HMZA 3R5RA 5CHOA 4HMSA 3ZOEA 1FLMA 1W3OA 3VY2A 2NR4A 3VYAA 2ECUA 1RZ0A 3H96A 1G76A 4Z85A 2GJGA 2I02A 1W3PA 3AMFA 3R5PA 2IG6A 2IMLA 3B5MA 3R5WA 4Y9IA 3ZOHA 5CHEC 3VY5A 1EJEA 3RH7A 3U34A 4XHYA 1Y30A 2QEAA 2IABA 4HMWA 2QCKA 3AWHA 3PFTA 3BNKA 3R5ZA 3ZOFA 3TGVA 1G77A 2FURA 2HQ7A 2OU5A 3U5WA 2D38A 4F07A 2HTIA 3NFWA 4ZKYA 2D37A 1USFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R82 A;  1G78 A;  1YLN A;  1USC A;  3BPK A;  3F7E A;  3FGE A;  3CP3 A;  3DNH A;  3EC6 A;  4IRA A;  4HX6 A;  2FHQ A;  4QVB A;  2VPA A;  3ZOD A;  1DNL A;  3KYF A;  2R6V A;  1RZ1 A;  1RFE A;  2OL5 A;  2R0X A;  1YOA A;  3IN6 A;  1VL7 A;  1XXO A;  2Q9K A;  5ESC A;  4YBN A;  5BNC A;  1W9A A;  1T9M A;  3DB0 A;  3BA3 A;  3DMB A;  4YWN A;  3A20 A;  4HMV A;  4XJ2 A;  2A2J A;  3CB0 A;  1I0R A;  3U35 A;  3K87 A;  2ASF A;  2HTD A;  1W3Q A;  2D36 A;  4HMT A;  4L82 A;  1AXJ A;  2PTF A;  3U0I A;  1WV4 A;  2X1K A;  1WLI A;  2D5M A;  4HMU A;  2HHZ A;  1XHN A;  2ARZ A;  1WLK A;  2RE7 A;  2ECR A;  3KYG A;  3K86 A;  2ED4 A;  2X1J A;  3HY8 A;  3R5Y A;  2AQ6 A;  3R5L A;  3SWJ A;  2RDE A;  3ZOG A;  2E83 A;  3GAS A;  5JAB A;  1W3R A;  2FG9 A;  1TY9 A;  3A6R A;  4HMX A;  3E4V A;  3ZOC A;  1CI0 A;  3A6Q A;  1G79 A;  2HQ9 A;  4N7R C;  1JNW A;  1WGB A;  1NRG A;  2I51 A;  1I0S A;  3K88 A;  3FKH A;  3HMZ A;  3R5R A;  5CHO A;  4HMS A;  3ZOE A;  1FLM A;  1W3O A;  3VY2 A;  2NR4 A;  3VYA A;  2ECU A;  1RZ0 A;  3H96 A;  1G76 A;  4Z85 A;  2GJG A;  2I02 A;  1W3P A;  3AMF A;  3R5P A;  2IG6 A;  2IML A;  3B5M A;  3R5W A;  4Y9I A;  3ZOH A;  5CHE C;  3VY5 A;  1EJE A;  3RH7 A;  3U34 A;  4XHY A;  1Y30 A;  2QEA A;  2IAB A;  4HMW A;  2QCK A;  3AWH A;  3PFT A;  3BNK A;  3R5Z A;  3ZOF A;  3TGV A;  1G77 A;  2FUR A;  2HQ7 A;  2OU5 A;  3U5W A;  2D38 A;  4F07 A;  2HTI A;  3NFW A;  4ZKY A;  2D37 A;  1USF A; 
#chains in the Genus database with same CATH topology
 4R82 A;  1G78 A;  1YLN A;  1USC A;  3BPK A;  3F7E A;  4HKH A;  3FGE A;  3CP3 A;  3DNH A;  3EC6 A;  4IRA A;  4HX6 A;  2FHQ A;  4QVB A;  2VPA A;  3ZOD A;  1DNL A;  3KYF A;  2R6V A;  1RZ1 A;  1RFE A;  2OL5 A;  2R0X A;  1YOA A;  3IN6 A;  1VL7 A;  1XXO A;  2Q9K A;  5ESC A;  4YBN A;  5BNC A;  1W9A A;  1T9M A;  3DB0 A;  3BA3 A;  3DMB A;  3EAA A;  4YWN A;  3A20 A;  4HMV A;  4XJ2 A;  2A2J A;  3CB0 A;  1I0R A;  3U35 A;  1Y12 A;  3K87 A;  2ASF A;  2HTD A;  1W3Q A;  2D36 A;  4HMT A;  4L82 A;  3HE1 A;  1AXJ A;  2PTF A;  3U0I A;  1WV4 A;  2X1K A;  1WLI A;  2D5M A;  4HMU A;  2HHZ A;  1XHN A;  2ARZ A;  4TV4 A;  1WLK A;  2RE7 A;  2ECR A;  3KYG A;  3K86 A;  2ED4 A;  2X1J A;  3HY8 A;  3R5Y A;  2AQ6 A;  3R5L A;  3SWJ A;  2RDE A;  3ZOG A;  2E83 A;  3GAS A;  5JAB A;  1W3R A;  2FG9 A;  1TY9 A;  3A6R A;  4HMX A;  3E4V A;  3ZOC A;  1CI0 A;  2K4Q A;  3A6Q A;  1G79 A;  2HQ9 A;  4N7R C;  1JNW A;  1WGB A;  1NRG A;  2I51 A;  1I0S A;  3K88 A;  4W64 A;  3FKH A;  3HMZ A;  3R5R A;  5CHO A;  4HMS A;  3ZOE A;  1FLM A;  1W3O A;  3VY2 A;  2NR4 A;  3VYA A;  2ECU A;  1RZ0 A;  3H96 A;  2L1T A;  1G76 A;  4Z85 A;  2GJG A;  2I02 A;  1W3P A;  3AMF A;  3R5P A;  2IG6 A;  2IML A;  3B5M A;  3R5W A;  4Y9I A;  3ZOH A;  5CHE C;  3VY5 A;  1EJE A;  3RH7 A;  3U34 A;  2P5Z X;  4XHY A;  4MTK A;  1Y30 A;  2QEA A;  2IAB A;  4UHV A;  4HMW A;  2QCK A;  3AWH A;  3V4H A;  3PFT A;  2GUJ A;  3BNK A;  3R5Z A;  3ZOF A;  3TGV A;  1G77 A;  2FUR A;  2HQ7 A;  2OU5 A;  3U5W A;  2D38 A;  4F07 A;  2HTI A;  3NFW A;  4ZKY A;  2D37 A;  1USF A; 
#chains in the Genus database with same CATH homology
 4R82 A;  1G78 A;  1YLN A;  1USC A;  3BPK A;  3F7E A;  3FGE A;  3CP3 A;  3DNH A;  3EC6 A;  4IRA A;  4HX6 A;  2FHQ A;  4QVB A;  2VPA A;  3ZOD A;  1DNL A;  3KYF A;  2R6V A;  1RZ1 A;  1RFE A;  2OL5 A;  2R0X A;  1YOA A;  3IN6 A;  1VL7 A;  1XXO A;  2Q9K A;  5ESC A;  4YBN A;  5BNC A;  1W9A A;  1T9M A;  3DB0 A;  3BA3 A;  3DMB A;  4YWN A;  3A20 A;  4HMV A;  4XJ2 A;  2A2J A;  3CB0 A;  1I0R A;  3U35 A;  3K87 A;  2ASF A;  2HTD A;  1W3Q A;  2D36 A;  4HMT A;  4L82 A;  1AXJ A;  2PTF A;  3U0I A;  1WV4 A;  2X1K A;  1WLI A;  2D5M A;  4HMU A;  2HHZ A;  1XHN A;  2ARZ A;  1WLK A;  2RE7 A;  2ECR A;  3KYG A;  3K86 A;  2ED4 A;  2X1J A;  3HY8 A;  3R5Y A;  2AQ6 A;  3R5L A;  3SWJ A;  2RDE A;  3ZOG A;  2E83 A;  3GAS A;  5JAB A;  1W3R A;  2FG9 A;  1TY9 A;  3A6R A;  4HMX A;  3E4V A;  3ZOC A;  1CI0 A;  3A6Q A;  1G79 A;  2HQ9 A;  4N7R C;  1JNW A;  1WGB A;  1NRG A;  2I51 A;  1I0S A;  3K88 A;  3FKH A;  3HMZ A;  3R5R A;  5CHO A;  4HMS A;  3ZOE A;  1FLM A;  1W3O A;  3VY2 A;  2NR4 A;  3VYA A;  2ECU A;  1RZ0 A;  3H96 A;  1G76 A;  4Z85 A;  2GJG A;  2I02 A;  1W3P A;  3AMF A;  3R5P A;  2IG6 A;  2IML A;  3B5M A;  3R5W A;  4Y9I A;  3ZOH A;  5CHE C;  3VY5 A;  1EJE A;  3RH7 A;  3U34 A;  4XHY A;  1Y30 A;  2QEA A;  2IAB A;  4HMW A;  2QCK A;  3AWH A;  3PFT A;  3BNK A;  3R5Z A;  3ZOF A;  3TGV A;  1G77 A;  2FUR A;  2HQ7 A;  2OU5 A;  3U5W A;  2D38 A;  4F07 A;  2HTI A;  3NFW A;  4ZKY A;  2D37 A;  1USF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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