2I82A

Crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced rna structure
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
217
structure length
217
Chain Sequence
MENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-R(*GP*AP*GP*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*
publication title Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure
pubmed doi rcsb
source organism Escherichia coli
molecule tags Lyase/rna
total genus 54
structure length 217
sequence length 217
chains with identical sequence B, C, D
ec nomenclature ec 5.4.99.28: tRNA pseudouridine(32) synthase.
pdb deposition date 2006-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00849 PseudoU_synth_2 RNA pseudouridylate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2350.10 Alpha Beta 2-Layer Sandwich Pseudouridine synthase Pseudouridine synthase 2i82A00
3LWPA 3LWVA 2AB4A 1KSVA 1K8WA 2I82A 1V9KA 1R3EA 1R3FA 1KSLA 2AUSA 1SGVA 2RFKA 4LGTA 1ZE1A 1V9FA 2EY4A 1QYUA 1PRZA 3MQKA 3DH3A 3HAXA 4LABA 1ZE2A 3LWOA 1KSKA 3UAIA 1ZL3A 3HJWA 2HVYA 3LWQA 2ISTA 2APOA 3HJYA 3LWRA 1XPIA 3U28A
chains in the Genus database with same CATH superfamily
3LWPA 3LWVA 2AB4A 1KSVA 1K8WA 2I82A 1V9KA 1R3EA 1SZWA 1R3FA 1KSLA 2AUSA 1SGVA 2RFKA 4LGTA 1ZE1A 1V9FA 2EY4A 1QYUA 1PRZA 1SB7A 3MQKA 3DH3A 3HAXA 4LABA 1ZE2A 3LWOA 1KSKA 3UAIA 1ZL3A 3HJWA 2HVYA 3LWQA 2ISTA 1Z2ZA 2APOA 3HJYA 3LWRA 1SI7A 1XPIA 3U28A
chains in the Genus database with same CATH topology
3LWPA 3LWVA 2AB4A 1KSVA 1K8WA 2I82A 1V9KA 1R3EA 1SZWA 1R3FA 1KSLA 2AUSA 1SGVA 2RFKA 4LGTA 1ZE1A 1V9FA 2EY4A 1QYUA 1PRZA 1SB7A 3MQKA 3DH3A 3HAXA 4LABA 1ZE2A 3LWOA 1KSKA 3UAIA 1ZL3A 3HJWA 2HVYA 3LWQA 2ISTA 1Z2ZA 2APOA 3HJYA 3LWRA 1SI7A 1XPIA 3U28A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LWP A;  3LWV A;  2AB4 A;  1KSV A;  1K8W A;  2I82 A;  1V9K A;  1R3E A;  1R3F A;  1KSL A;  2AUS A;  1SGV A;  2RFK A;  4LGT A;  1ZE1 A;  1V9F A;  2EY4 A;  1QYU A;  1PRZ A;  3MQK A;  3DH3 A;  3HAX A;  4LAB A;  1ZE2 A;  3LWO A;  1KSK A;  3UAI A;  1ZL3 A;  3HJW A;  2HVY A;  3LWQ A;  2IST A;  2APO A;  3HJY A;  3LWR A;  1XPI A;  3U28 A; 
#chains in the Genus database with same CATH topology
 3LWP A;  3LWV A;  2AB4 A;  1KSV A;  1K8W A;  2I82 A;  1V9K A;  1R3E A;  1SZW A;  1R3F A;  1KSL A;  2AUS A;  1SGV A;  2RFK A;  4LGT A;  1ZE1 A;  1V9F A;  2EY4 A;  1QYU A;  1PRZ A;  1SB7 A;  3MQK A;  3DH3 A;  3HAX A;  4LAB A;  1ZE2 A;  3LWO A;  1KSK A;  3UAI A;  1ZL3 A;  3HJW A;  2HVY A;  3LWQ A;  2IST A;  1Z2Z A;  2APO A;  3HJY A;  3LWR A;  1SI7 A;  1XPI A;  3U28 A; 
#chains in the Genus database with same CATH homology
 3LWP A;  3LWV A;  2AB4 A;  1KSV A;  1K8W A;  2I82 A;  1V9K A;  1R3E A;  1SZW A;  1R3F A;  1KSL A;  2AUS A;  1SGV A;  2RFK A;  4LGT A;  1ZE1 A;  1V9F A;  2EY4 A;  1QYU A;  1PRZ A;  1SB7 A;  3MQK A;  3DH3 A;  3HAX A;  4LAB A;  1ZE2 A;  3LWO A;  1KSK A;  3UAI A;  1ZL3 A;  3HJW A;  2HVY A;  3LWQ A;  2IST A;  1Z2Z A;  2APO A;  3HJY A;  3LWR A;  1SI7 A;  1XPI A;  3U28 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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