2I89A

Structure of septuple mutant of rat outer mitochondrial membrane cytochrome b5
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
90
structure length
90
Chain Sequence
QGSDPAVTYYRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREMSKQYYIGDVHPNDLKPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome b5 type B
publication title A histidine/tryptophan pi-stacking interaction stabilizes the heme-independent folding core of microsomal apocytochrome b5 relative to that of mitochondrial apocytochrome b5.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 27
structure length 90
sequence length 90
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2006-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 2i89A00
1ICCA 3LF5A 1I8CA 1X3XA 3X33A 3X34A 4HILA 1CXYA 3NERA 1AQAA 1JEXA 1T0GA 1BLVA 1U9UA 1M59A 2M33A 1IB7A 1LQXA 3MUSA 4X8YA 1ES1A 3X35A 1LJ0A 1I87A 1B5MA 3X32A 4B8NA 1EHBA 1LCOA 1IEUA 1AXXA 1J03A 2OZ0A 4HINA 1M20A 1DO9A 1F04A 1LTDA 1I5UA 1M2MA 2I96A 1KBIA 1LR6A 1M2IA 1J0QA 1SH4A 1FCBA 2I89A 1AWPA 1MJ4A 2AXXA 3KS0A 1AW3A 1MNYA 1HKOA 1BFXA 2KEOA 1U9MA 1B5AA 1IETA 1CYOA 2IBJA 1EUEA 1B5BA 3OZZB 1F03A 1LDCA 1SOXA 1NX7A
chains in the Genus database with same CATH superfamily
1ICCA 3LF5A 1I8CA 1X3XA 3X33A 3X34A 4HILA 1CXYA 3NERA 1AQAA 1JEXA 1T0GA 1BLVA 1U9UA 1M59A 2M33A 1IB7A 1LQXA 3MUSA 4X8YA 1ES1A 3X35A 1LJ0A 1I87A 1B5MA 3X32A 4B8NA 1EHBA 1LCOA 1IEUA 1AXXA 1J03A 2OZ0A 4HINA 1M20A 1DO9A 1F04A 1LTDA 1I5UA 1M2MA 2I96A 1KBIA 1LR6A 1M2IA 1J0QA 1SH4A 1FCBA 2I89A 1AWPA 1MJ4A 2AXXA 3KS0A 1AW3A 1MNYA 1HKOA 1BFXA 2KEOA 1U9MA 1B5AA 1IETA 1CYOA 2IBJA 1EUEA 1B5BA 3OZZB 1F03A 1LDCA 1SOXA 1NX7A
chains in the Genus database with same CATH topology
1ICCA 3LF5A 1I8CA 1X3XA 3X33A 3X34A 4HILA 1CXYA 3NERA 1AQAA 1JEXA 1T0GA 1BLVA 1U9UA 1M59A 2M33A 1IB7A 1LQXA 3MUSA 4X8YA 1ES1A 3X35A 1LJ0A 1I87A 1B5MA 3X32A 4B8NA 1EHBA 1LCOA 1IEUA 1AXXA 1J03A 2OZ0A 4HINA 1M20A 1DO9A 1F04A 1LTDA 1I5UA 1M2MA 2I96A 1KBIA 1LR6A 1M2IA 1J0QA 1SH4A 1FCBA 2I89A 1AWPA 1MJ4A 2AXXA 3KS0A 1AW3A 1MNYA 1HKOA 1BFXA 2KEOA 1U9MA 1B5AA 1IETA 1CYOA 2IBJA 1EUEA 1B5BA 3OZZB 1F03A 1LDCA 1SOXA 1NX7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ICC A;  3LF5 A;  1I8C A;  1X3X A;  3X33 A;  3X34 A;  4HIL A;  1CXY A;  3NER A;  1AQA A;  1JEX A;  1T0G A;  1BLV A;  1U9U A;  1M59 A;  2M33 A;  1IB7 A;  1LQX A;  3MUS A;  4X8Y A;  1ES1 A;  3X35 A;  1LJ0 A;  1I87 A;  1B5M A;  3X32 A;  4B8N A;  1EHB A;  1LCO A;  1IEU A;  1AXX A;  1J03 A;  2OZ0 A;  4HIN A;  1M20 A;  1DO9 A;  1F04 A;  1LTD A;  1I5U A;  1M2M A;  2I96 A;  1KBI A;  1LR6 A;  1M2I A;  1J0Q A;  1SH4 A;  1FCB A;  2I89 A;  1AWP A;  1MJ4 A;  2AXX A;  3KS0 A;  1AW3 A;  1MNY A;  1HKO A;  1BFX A;  2KEO A;  1U9M A;  1B5A A;  1IET A;  1CYO A;  2IBJ A;  1EUE A;  1B5B A;  3OZZ B;  1F03 A;  1LDC A;  1SOX A;  1NX7 A; 
#chains in the Genus database with same CATH topology
 1ICC A;  3LF5 A;  1I8C A;  1X3X A;  3X33 A;  3X34 A;  4HIL A;  1CXY A;  3NER A;  1AQA A;  1JEX A;  1T0G A;  1BLV A;  1U9U A;  1M59 A;  2M33 A;  1IB7 A;  1LQX A;  3MUS A;  4X8Y A;  1ES1 A;  3X35 A;  1LJ0 A;  1I87 A;  1B5M A;  3X32 A;  4B8N A;  1EHB A;  1LCO A;  1IEU A;  1AXX A;  1J03 A;  2OZ0 A;  4HIN A;  1M20 A;  1DO9 A;  1F04 A;  1LTD A;  1I5U A;  1M2M A;  2I96 A;  1KBI A;  1LR6 A;  1M2I A;  1J0Q A;  1SH4 A;  1FCB A;  2I89 A;  1AWP A;  1MJ4 A;  2AXX A;  3KS0 A;  1AW3 A;  1MNY A;  1HKO A;  1BFX A;  2KEO A;  1U9M A;  1B5A A;  1IET A;  1CYO A;  2IBJ A;  1EUE A;  1B5B A;  3OZZ B;  1F03 A;  1LDC A;  1SOX A;  1NX7 A; 
#chains in the Genus database with same CATH homology
 1ICC A;  3LF5 A;  1I8C A;  1X3X A;  3X33 A;  3X34 A;  4HIL A;  1CXY A;  3NER A;  1AQA A;  1JEX A;  1T0G A;  1BLV A;  1U9U A;  1M59 A;  2M33 A;  1IB7 A;  1LQX A;  3MUS A;  4X8Y A;  1ES1 A;  3X35 A;  1LJ0 A;  1I87 A;  1B5M A;  3X32 A;  4B8N A;  1EHB A;  1LCO A;  1IEU A;  1AXX A;  1J03 A;  2OZ0 A;  4HIN A;  1M20 A;  1DO9 A;  1F04 A;  1LTD A;  1I5U A;  1M2M A;  2I96 A;  1KBI A;  1LR6 A;  1M2I A;  1J0Q A;  1SH4 A;  1FCB A;  2I89 A;  1AWP A;  1MJ4 A;  2AXX A;  3KS0 A;  1AW3 A;  1MNY A;  1HKO A;  1BFX A;  2KEO A;  1U9M A;  1B5A A;  1IET A;  1CYO A;  2IBJ A;  1EUE A;  1B5B A;  3OZZ B;  1F03 A;  1LDC A;  1SOX A;  1NX7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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