2I96A

Solution structure of the oxidized microsomal human cytochrome b5
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
108
structure length
108
Chain Sequence
MAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPETLITTIDSSSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome b5
publication title Solution Structure of human cytochrome b5
rcsb
source organism Homo sapiens
total genus 17
structure length 108
sequence length 108
ec nomenclature
pdb deposition date 2006-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 2i96A01
3OZZB 1X3XA 3X35A 1I5UA 1M2MA 3KS0A 3NERA 1AWPA 2OZ0A 1CXYA 1AW3A 4HINA 4X8YA 1NX7A 2KEOA 1HKOA 1BFXA 1FCBA 1J03A 1KBIA 1BLVA 1M20A 1U9MA 4B8NA 1SH4A 1LQXA 1MNYA 3X34A 1LDCA 1B5BA 1EHBA 3X32A 1IEUA 3LF5A 1B5MA 1B5AA 1LR6A 1M2IA 1T0GA 1J0QA 1F03A 1DO9A 1U9UA 1LTDA 2I89A 1SOXA 1LCOA 1AQAA 2I96A 2IBJA 1EUEA 1I8CA 1LJ0A 2M33A 3X33A 1IETA 1MJ4A 2AXXA 1I87A 3MUSA 1AXXA 1F04A 1ES1A 1IB7A 4HILA 1JEXA 1ICCA 1M59A 1CYOA
chains in the Genus database with same CATH superfamily
3OZZB 1X3XA 3X35A 1I5UA 1M2MA 3KS0A 3NERA 1AWPA 2OZ0A 1CXYA 1AW3A 4HINA 4X8YA 1NX7A 2KEOA 1HKOA 1BFXA 1FCBA 1J03A 1KBIA 1BLVA 1M20A 1U9MA 4B8NA 1SH4A 1LQXA 1MNYA 3X34A 1LDCA 1B5BA 1EHBA 3X32A 1IEUA 3LF5A 1B5MA 1B5AA 1LR6A 1M2IA 1T0GA 1J0QA 1F03A 1DO9A 1U9UA 1LTDA 2I89A 1SOXA 1LCOA 1AQAA 2I96A 2IBJA 1EUEA 1I8CA 1LJ0A 2M33A 3X33A 1IETA 1MJ4A 2AXXA 1I87A 3MUSA 1AXXA 1F04A 1ES1A 1IB7A 4HILA 1JEXA 1ICCA 1M59A 1CYOA
chains in the Genus database with same CATH topology
3OZZB 1X3XA 3X35A 1I5UA 1M2MA 3KS0A 3NERA 1AWPA 2OZ0A 1CXYA 1AW3A 4HINA 4X8YA 1NX7A 2KEOA 1HKOA 1BFXA 1FCBA 1J03A 1KBIA 1BLVA 1M20A 1U9MA 4B8NA 1SH4A 1LQXA 1MNYA 3X34A 1LDCA 1B5BA 1EHBA 3X32A 1IEUA 3LF5A 1B5MA 1B5AA 1LR6A 1M2IA 1T0GA 1J0QA 1F03A 1DO9A 1U9UA 1LTDA 2I89A 1SOXA 1LCOA 1AQAA 2I96A 2IBJA 1EUEA 1I8CA 1LJ0A 2M33A 3X33A 1IETA 1MJ4A 2AXXA 1I87A 3MUSA 1AXXA 1F04A 1ES1A 1IB7A 4HILA 1JEXA 1ICCA 1M59A 1CYOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OZZ B;  1X3X A;  3X35 A;  1I5U A;  1M2M A;  3KS0 A;  3NER A;  1AWP A;  2OZ0 A;  1CXY A;  1AW3 A;  4HIN A;  4X8Y A;  1NX7 A;  2KEO A;  1HKO A;  1BFX A;  1FCB A;  1J03 A;  1KBI A;  1BLV A;  1M20 A;  1U9M A;  4B8N A;  1SH4 A;  1LQX A;  1MNY A;  3X34 A;  1LDC A;  1B5B A;  1EHB A;  3X32 A;  1IEU A;  3LF5 A;  1B5M A;  1B5A A;  1LR6 A;  1M2I A;  1T0G A;  1J0Q A;  1F03 A;  1DO9 A;  1U9U A;  1LTD A;  2I89 A;  1SOX A;  1LCO A;  1AQA A;  2I96 A;  2IBJ A;  1EUE A;  1I8C A;  1LJ0 A;  2M33 A;  3X33 A;  1IET A;  1MJ4 A;  2AXX A;  1I87 A;  3MUS A;  1AXX A;  1F04 A;  1ES1 A;  1IB7 A;  4HIL A;  1JEX A;  1ICC A;  1M59 A;  1CYO A; 
#chains in the Genus database with same CATH topology
 3OZZ B;  1X3X A;  3X35 A;  1I5U A;  1M2M A;  3KS0 A;  3NER A;  1AWP A;  2OZ0 A;  1CXY A;  1AW3 A;  4HIN A;  4X8Y A;  1NX7 A;  2KEO A;  1HKO A;  1BFX A;  1FCB A;  1J03 A;  1KBI A;  1BLV A;  1M20 A;  1U9M A;  4B8N A;  1SH4 A;  1LQX A;  1MNY A;  3X34 A;  1LDC A;  1B5B A;  1EHB A;  3X32 A;  1IEU A;  3LF5 A;  1B5M A;  1B5A A;  1LR6 A;  1M2I A;  1T0G A;  1J0Q A;  1F03 A;  1DO9 A;  1U9U A;  1LTD A;  2I89 A;  1SOX A;  1LCO A;  1AQA A;  2I96 A;  2IBJ A;  1EUE A;  1I8C A;  1LJ0 A;  2M33 A;  3X33 A;  1IET A;  1MJ4 A;  2AXX A;  1I87 A;  3MUS A;  1AXX A;  1F04 A;  1ES1 A;  1IB7 A;  4HIL A;  1JEX A;  1ICC A;  1M59 A;  1CYO A; 
#chains in the Genus database with same CATH homology
 3OZZ B;  1X3X A;  3X35 A;  1I5U A;  1M2M A;  3KS0 A;  3NER A;  1AWP A;  2OZ0 A;  1CXY A;  1AW3 A;  4HIN A;  4X8Y A;  1NX7 A;  2KEO A;  1HKO A;  1BFX A;  1FCB A;  1J03 A;  1KBI A;  1BLV A;  1M20 A;  1U9M A;  4B8N A;  1SH4 A;  1LQX A;  1MNY A;  3X34 A;  1LDC A;  1B5B A;  1EHB A;  3X32 A;  1IEU A;  3LF5 A;  1B5M A;  1B5A A;  1LR6 A;  1M2I A;  1T0G A;  1J0Q A;  1F03 A;  1DO9 A;  1U9U A;  1LTD A;  2I89 A;  1SOX A;  1LCO A;  1AQA A;  2I96 A;  2IBJ A;  1EUE A;  1I8C A;  1LJ0 A;  2M33 A;  3X33 A;  1IET A;  1MJ4 A;  2AXX A;  1I87 A;  3MUS A;  1AXX A;  1F04 A;  1ES1 A;  1IB7 A;  4HIL A;  1JEX A;  1ICC A;  1M59 A;  1CYO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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