2I9DA

Chloramphenicol acetyltransferase
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
214
structure length
214
Chain Sequence
MKQIIDIENWERKENFNFFRHFQNPQLSITSEVECGGARQRAKAAGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNAGKAIIREGRLVMPIAMTIHHGFIDGHHLSLFYKKVEDFLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title chloramphenicol acetyltransferase
rcsb
molecule keywords Chloramphenicol acetyltransferase
source organism Bacteroides thetaiotaomicron
molecule tags Transferase
total genus 66
structure length 214
sequence length 214
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2006-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00302 CAT Chloramphenicol acetyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2i9dA00
5T3EA 1L5AA 2VSQA 1QCAA 1DPDA 2XR7A 3FOTA 1XMDA 3L60A 4JN5A 5DUAA 5KJVA 5KJUA 1EADA 1EAEA 2ZBAA 3U9FA 2E1TA 1C4TA 2I9DA 4JN3A 1EAFA 4G22A 2CLAA 1PD5A 1NOCB 1Q9JA 5DU9A 3U9BA 1EABA 2IHWA 1E2OA 1XL8A 2E1VA 2XHGA 2RKVA 3FP0A 1EACA 4CLAA 1XMCA 1DPCA 1Q23A 3B30A 4HVMA 1CLAA 4KE4A 2BGHA 2II3A 5KJSA 1CIAA 2II5A 2JGPA 1SCZA 5KJTA 2E1UA 1DPBA 2RKTA 4G2MA 1EAAA 4N72A 5FALA 5FANA 1XL7A 3MAEA 4G0BA 5KJWA 2II4A 4KECA 3B2SA 3CLAA
chains in the Genus database with same CATH superfamily
3FOTA 2FW3A 2I9DA 1C4TA 2CLAA 2IHWA 2H3UA 2RKVA 1EACA 4HVMA 1T7QA 2BGHA 2II5A 2E1UA 4N72A 3MAEA 5KJWA 1T7OA 3CLAA 2DEBA 1QCAA 3L60A 2H3WA 1T1UA 5KJUA 1EAEA 1Q6XA 4G22A 2FYOA 1NDIA 1NDFA 2XHGA 1DPCA 1Q23A 3B30A 1NDBA 5DUAA 1L5AA 2VSQA 1DPDA 2XR7A 1XMDA 4EYWA 2E1TA 4JN3A 1EAFA 4EPHA 1Q9JA 5DU9A 3U9BA 1EABA 1E2OA 4CLAA 2FY3A 1CLAA 1T7NA 4KE4A 2II3A 1CIAA 5KJTA 4G2MA 2RKTA 1EAAA 2RCUA 5FANA 1XL7A 2II4A 4KECA 5T3EA 4JN5A 5KJVA 1EADA 2ZBAA 3U9FA 2FY4A 2H4TA 2H3PA 1PD5A 1NOCB 2FY5A 1XL8A 2E1VA 3FP0A 1XMCA 1S5OA 2FY2A 5KJSA 2JGPA 1SCZA 1DPBA 4EP9A 1NM8A 5FALA 4G0BA 3B2SA
chains in the Genus database with same CATH topology
5T3EA 1L5AA 2VSQA 1QCAA 1DPDA 2XR7A 3FOTA 1XMDA 3L60A 4JN5A 5DUAA 5KJVA 5KJUA 1EADA 1EAEA 2ZBAA 3U9FA 2E1TA 1C4TA 2I9DA 4JN3A 1EAFA 4G22A 2CLAA 1PD5A 1NOCB 1Q9JA 5DU9A 3U9BA 1EABA 2IHWA 1E2OA 1XL8A 2E1VA 2XHGA 2RKVA 3FP0A 1EACA 4CLAA 1XMCA 1DPCA 1Q23A 3B30A 4HVMA 1CLAA 4KE4A 2BGHA 2II3A 5KJSA 1CIAA 2II5A 2JGPA 1SCZA 5KJTA 2E1UA 1DPBA 2RKTA 4G2MA 1EAAA 4N72A 5FALA 5FANA 1XL7A 3MAEA 4G0BA 5KJWA 2II4A 4KECA 3B2SA 3CLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5T3E A;  1L5A A;  2VSQ A;  1QCA A;  1DPD A;  2XR7 A;  3FOT A;  1XMD A;  3L60 A;  4JN5 A;  5DUA A;  5KJV A;  5KJU A;  1EAD A;  1EAE A;  2ZBA A;  3U9F A;  2E1T A;  1C4T A;  2I9D A;  4JN3 A;  1EAF A;  4G22 A;  2CLA A;  1PD5 A;  1NOC B;  1Q9J A;  5DU9 A;  3U9B A;  1EAB A;  2IHW A;  1E2O A;  1XL8 A;  2E1V A;  2XHG A;  2RKV A;  3FP0 A;  1EAC A;  4CLA A;  1XMC A;  1DPC A;  1Q23 A;  3B30 A;  4HVM A;  1CLA A;  4KE4 A;  2BGH A;  2II3 A;  5KJS A;  1CIA A;  2II5 A;  2JGP A;  1SCZ A;  5KJT A;  2E1U A;  1DPB A;  2RKT A;  4G2M A;  1EAA A;  4N72 A;  5FAL A;  5FAN A;  1XL7 A;  3MAE A;  4G0B A;  5KJW A;  2II4 A;  4KEC A;  3B2S A;  3CLA A; 
#chains in the Genus database with same CATH topology
 3FOT A;  2FW3 A;  2I9D A;  1C4T A;  2CLA A;  2IHW A;  2H3U A;  2RKV A;  1EAC A;  4HVM A;  1T7Q A;  2BGH A;  2II5 A;  2E1U A;  4N72 A;  3MAE A;  5KJW A;  1T7O A;  3CLA A;  2DEB A;  1QCA A;  3L60 A;  2H3W A;  1T1U A;  5KJU A;  1EAE A;  1Q6X A;  4G22 A;  2FYO A;  1NDI A;  1NDF A;  2XHG A;  1DPC A;  1Q23 A;  3B30 A;  1NDB A;  5DUA A;  1L5A A;  2VSQ A;  1DPD A;  2XR7 A;  1XMD A;  4EYW A;  2E1T A;  4JN3 A;  1EAF A;  4EPH A;  1Q9J A;  5DU9 A;  3U9B A;  1EAB A;  1E2O A;  4CLA A;  2FY3 A;  1CLA A;  1T7N A;  4KE4 A;  2II3 A;  1CIA A;  5KJT A;  4G2M A;  2RKT A;  1EAA A;  2RCU A;  5FAN A;  1XL7 A;  2II4 A;  4KEC A;  5T3E A;  4JN5 A;  5KJV A;  1EAD A;  2ZBA A;  3U9F A;  2FY4 A;  2H4T A;  2H3P A;  1PD5 A;  1NOC B;  2FY5 A;  1XL8 A;  2E1V A;  3FP0 A;  1XMC A;  1S5O A;  2FY2 A;  5KJS A;  2JGP A;  1SCZ A;  1DPB A;  4EP9 A;  1NM8 A;  5FAL A;  4G0B A;  3B2S A; 
#chains in the Genus database with same CATH homology
 5T3E A;  1L5A A;  2VSQ A;  1QCA A;  1DPD A;  2XR7 A;  3FOT A;  1XMD A;  3L60 A;  4JN5 A;  5DUA A;  5KJV A;  5KJU A;  1EAD A;  1EAE A;  2ZBA A;  3U9F A;  2E1T A;  1C4T A;  2I9D A;  4JN3 A;  1EAF A;  4G22 A;  2CLA A;  1PD5 A;  1NOC B;  1Q9J A;  5DU9 A;  3U9B A;  1EAB A;  2IHW A;  1E2O A;  1XL8 A;  2E1V A;  2XHG A;  2RKV A;  3FP0 A;  1EAC A;  4CLA A;  1XMC A;  1DPC A;  1Q23 A;  3B30 A;  4HVM A;  1CLA A;  4KE4 A;  2BGH A;  2II3 A;  5KJS A;  1CIA A;  2II5 A;  2JGP A;  1SCZ A;  5KJT A;  2E1U A;  1DPB A;  2RKT A;  4G2M A;  1EAA A;  4N72 A;  5FAL A;  5FAN A;  1XL7 A;  3MAE A;  4G0B A;  5KJW A;  2II4 A;  4KEC A;  3B2S A;  3CLA A; 
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similar chains in the pdb database (?% sequence similarity)

 
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