2IB1A

Solution structure of p45 death domain
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
91
structure length
91
Chain Sequence
PQQQQEEVQRLLMMGEPAKGWQELAGHLGYQAEAVETMACDQMPAYTLLRNWAAQEGNRATLRVLEDALAAIGREDVVQVLSSPAESSSVV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Solution Structure of p45 death domain
rcsb
source organism Mus musculus
molecule tags Apoptosis
molecule keywords Death domain containing membrane protein NRADD
total genus 20
structure length 91
sequence length 91
ec nomenclature
pdb deposition date 2006-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2ib1A00
2YVIA 1PN5A 1DGNA 2MS8A 2BBRA 2MN4A 4M9XA 2DBDA 2HM2Q 3LQQA 4D8OA 1FADA 3KATA 2NAQA 4M9ZA 4A2WA 2KM6A 2LWEA 1WXPA 2GF5A 2L6AA 1N3KA 4RHWA 4N1JA 4F42A 4O9FA 2MB9A 1Z6TA 2M5VA 3J63A 2OF5H 2VGQA 2DBFA 2DO9A 2N7ZA 4EWIA 1WMGA 4IZ5E 2O71A 2N97A 2N80A 4N1LA 3MOPG 2N83A 4JUPA 2A5YB 1CY5A 2N00A 2MS7A 3CL3A 4DWNA 4IZAB 1E41A 4N1KA 4O6XA 1YGOA 3MOPA 1D2ZA 1E3YA 4M9SA 2A9IA 4I16A 2MPCA 4A2QA 1NGRA 4O9LA 3MOPK 1C15A 2D96A 1WH4A 2NSNA 1ICHA 3J6JA 4ZBWA 2B1WA 2OF5A 1UCPA 4F44A 4QOBA 3LQRA 4E9MA 2LWDA 4JQWA 2LS7A 4UZ0A 2L9MA 2YGSA 1D2ZB 4LWDA 2IB1A 3QF2A 3YGSP 1CWWA 1DDFA 2N1FA 3YGSC 2NZ7A 4NQKA 4P4HI 2P1HA 2YQFA 3EZQB 2DBGA 4RHWE 2DBHA 2G7RA 4IZ7B 2BBZA 2YU0A 3CRDA 4FH0A 4P4HA 1A1ZA 3T6PA 4O7QA 2KN6A 3EZQA 2F1SA 1A1WA
chains in the Genus database with same CATH superfamily
2YVIA 1PN5A 1DGNA 2MS8A 2BBRA 2MN4A 4M9XA 2DBDA 2HM2Q 3LQQA 4D8OA 1FADA 3KATA 2NAQA 4M9ZA 4A2WA 2KM6A 2LWEA 1WXPA 2GF5A 2L6AA 1N3KA 4RHWA 4N1JA 4F42A 4O9FA 2MB9A 2XV9A 1Z6TA 2M5VA 3J63A 2OF5H 2VGQA 2DBFA 2DO9A 2N7ZA 4EWIA 1WMGA 4IZ5E 2O71A 2N97A 2N80A 4N1LA 3MOPG 2N83A 4JUPA 2A5YB 1CY5A 2N00A 2MS7A 3CL3A 4DWNA 4IZAB 1E41A 4N1KA 4O6XA 1YGOA 3MOPA 1D2ZA 1E3YA 4M9SA 2A9IA 4I16A 2MPCA 4A2QA 1NGRA 4O9LA 3MOPK 1C15A 2D96A 1WH4A 2NSNA 1ICHA 3J6JA 4ZBWA 2B1WA 2OF5A 1UCPA 4F44A 4QOBA 3LQRA 4E9MA 2LWDA 4JQWA 2LS7A 4UZ0A 2L9MA 2YGSA 1D2ZB 4LWDA 2IB1A 3QF2A 3YGSP 1CWWA 1DDFA 2N1FA 3YGSC 2NZ7A 4NQKA 4P4HI 2P1HA 2YQFA 3EZQB 2DBGA 4RHWE 2DBHA 2G7RA 2MJMA 4IZ7B 2BBZA 2YU0A 3CRDA 4FH0A 4P4HA 1A1ZA 3T6PA 4O7QA 2KN6A 3EZQA 2F1SA 1A1WA
chains in the Genus database with same CATH topology
2YVIA 1PN5A 1DGNA 2MS8A 2BBRA 2MN4A 4M9XA 2DBDA 2HM2Q 3LQQA 4D8OA 1FADA 3KATA 2NAQA 4M9ZA 4A2WA 2KM6A 2LWEA 1WXPA 2GF5A 2L6AA 1N3KA 4RHWA 4N1JA 4F42A 4O9FA 2MB9A 2XV9A 1Z6TA 2M5VA 3J63A 2OF5H 2VGQA 2DBFA 2DO9A 2N7ZA 4EWIA 1WMGA 4IZ5E 2O71A 2N97A 2N80A 4N1LA 3MOPG 2N83A 4JUPA 2A5YB 1CY5A 2N00A 2MS7A 3CL3A 4DWNA 4IZAB 1E41A 4N1KA 4O6XA 1YGOA 3MOPA 1D2ZA 1E3YA 4M9SA 2A9IA 4I16A 2MPCA 4A2QA 1NGRA 4O9LA 3MOPK 1C15A 2D96A 1WH4A 2NSNA 1ICHA 3J6JA 4ZBWA 2B1WA 2OF5A 1UCPA 4F44A 4QOBA 3LQRA 4E9MA 2LWDA 4JQWA 2LS7A 4UZ0A 2L9MA 2YGSA 1D2ZB 4LWDA 2IB1A 3QF2A 3YGSP 1CWWA 1DDFA 2N1FA 3YGSC 2NZ7A 4NQKA 4P4HI 2P1HA 2YQFA 3EZQB 2DBGA 4RHWE 2DBHA 2G7RA 2MJMA 4IZ7B 2BBZA 2YU0A 3CRDA 4FH0A 4P4HA 1A1ZA 3T6PA 4O7QA 2KN6A 3EZQA 2F1SA 1A1WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YVI A;  1PN5 A;  1DGN A;  2MS8 A;  2BBR A;  2MN4 A;  4M9X A;  2DBD A;  2HM2 Q;  3LQQ A;  4D8O A;  1FAD A;  3KAT A;  2NAQ A;  4M9Z A;  4A2W A;  2KM6 A;  2LWE A;  1WXP A;  2GF5 A;  2L6A A;  1N3K A;  4RHW A;  4N1J A;  4F42 A;  4O9F A;  2MB9 A;  1Z6T A;  2M5V A;  3J63 A;  2OF5 H;  2VGQ A;  2DBF A;  2DO9 A;  2N7Z A;  4EWI A;  1WMG A;  4IZ5 E;  2O71 A;  2N97 A;  2N80 A;  4N1L A;  3MOP G;  2N83 A;  4JUP A;  2A5Y B;  1CY5 A;  2N00 A;  2MS7 A;  3CL3 A;  4DWN A;  4IZA B;  1E41 A;  4N1K A;  4O6X A;  1YGO A;  3MOP A;  1D2Z A;  1E3Y A;  4M9S A;  2A9I A;  4I16 A;  2MPC A;  4A2Q A;  1NGR A;  4O9L A;  3MOP K;  1C15 A;  2D96 A;  1WH4 A;  2NSN A;  1ICH A;  3J6J A;  4ZBW A;  2B1W A;  2OF5 A;  1UCP A;  4F44 A;  4QOB A;  3LQR A;  4E9M A;  2LWD A;  4JQW A;  2LS7 A;  4UZ0 A;  2L9M A;  2YGS A;  1D2Z B;  4LWD A;  2IB1 A;  3QF2 A;  3YGS P;  1CWW A;  1DDF A;  2N1F A;  3YGS C;  2NZ7 A;  4NQK A;  4P4H I;  2P1H A;  2YQF A;  3EZQ B;  2DBG A;  4RHW E;  2DBH A;  2G7R A;  4IZ7 B;  2BBZ A;  2YU0 A;  3CRD A;  4FH0 A;  4P4H A;  1A1Z A;  3T6P A;  4O7Q A;  2KN6 A;  3EZQ A;  2F1S A;  1A1W A; 
#chains in the Genus database with same CATH topology
 2YVI A;  1PN5 A;  1DGN A;  2MS8 A;  2BBR A;  2MN4 A;  4M9X A;  2DBD A;  2HM2 Q;  3LQQ A;  4D8O A;  1FAD A;  3KAT A;  2NAQ A;  4M9Z A;  4A2W A;  2KM6 A;  2LWE A;  1WXP A;  2GF5 A;  2L6A A;  1N3K A;  4RHW A;  4N1J A;  4F42 A;  4O9F A;  2MB9 A;  2XV9 A;  1Z6T A;  2M5V A;  3J63 A;  2OF5 H;  2VGQ A;  2DBF A;  2DO9 A;  2N7Z A;  4EWI A;  1WMG A;  4IZ5 E;  2O71 A;  2N97 A;  2N80 A;  4N1L A;  3MOP G;  2N83 A;  4JUP A;  2A5Y B;  1CY5 A;  2N00 A;  2MS7 A;  3CL3 A;  4DWN A;  4IZA B;  1E41 A;  4N1K A;  4O6X A;  1YGO A;  3MOP A;  1D2Z A;  1E3Y A;  4M9S A;  2A9I A;  4I16 A;  2MPC A;  4A2Q A;  1NGR A;  4O9L A;  3MOP K;  1C15 A;  2D96 A;  1WH4 A;  2NSN A;  1ICH A;  3J6J A;  4ZBW A;  2B1W A;  2OF5 A;  1UCP A;  4F44 A;  4QOB A;  3LQR A;  4E9M A;  2LWD A;  4JQW A;  2LS7 A;  4UZ0 A;  2L9M A;  2YGS A;  1D2Z B;  4LWD A;  2IB1 A;  3QF2 A;  3YGS P;  1CWW A;  1DDF A;  2N1F A;  3YGS C;  2NZ7 A;  4NQK A;  4P4H I;  2P1H A;  2YQF A;  3EZQ B;  2DBG A;  4RHW E;  2DBH A;  2G7R A;  2MJM A;  4IZ7 B;  2BBZ A;  2YU0 A;  3CRD A;  4FH0 A;  4P4H A;  1A1Z A;  3T6P A;  4O7Q A;  2KN6 A;  3EZQ A;  2F1S A;  1A1W A; 
#chains in the Genus database with same CATH homology
 2YVI A;  1PN5 A;  1DGN A;  2MS8 A;  2BBR A;  2MN4 A;  4M9X A;  2DBD A;  2HM2 Q;  3LQQ A;  4D8O A;  1FAD A;  3KAT A;  2NAQ A;  4M9Z A;  4A2W A;  2KM6 A;  2LWE A;  1WXP A;  2GF5 A;  2L6A A;  1N3K A;  4RHW A;  4N1J A;  4F42 A;  4O9F A;  2MB9 A;  2XV9 A;  1Z6T A;  2M5V A;  3J63 A;  2OF5 H;  2VGQ A;  2DBF A;  2DO9 A;  2N7Z A;  4EWI A;  1WMG A;  4IZ5 E;  2O71 A;  2N97 A;  2N80 A;  4N1L A;  3MOP G;  2N83 A;  4JUP A;  2A5Y B;  1CY5 A;  2N00 A;  2MS7 A;  3CL3 A;  4DWN A;  4IZA B;  1E41 A;  4N1K A;  4O6X A;  1YGO A;  3MOP A;  1D2Z A;  1E3Y A;  4M9S A;  2A9I A;  4I16 A;  2MPC A;  4A2Q A;  1NGR A;  4O9L A;  3MOP K;  1C15 A;  2D96 A;  1WH4 A;  2NSN A;  1ICH A;  3J6J A;  4ZBW A;  2B1W A;  2OF5 A;  1UCP A;  4F44 A;  4QOB A;  3LQR A;  4E9M A;  2LWD A;  4JQW A;  2LS7 A;  4UZ0 A;  2L9M A;  2YGS A;  1D2Z B;  4LWD A;  2IB1 A;  3QF2 A;  3YGS P;  1CWW A;  1DDF A;  2N1F A;  3YGS C;  2NZ7 A;  4NQK A;  4P4H I;  2P1H A;  2YQF A;  3EZQ B;  2DBG A;  4RHW E;  2DBH A;  2G7R A;  2MJM A;  4IZ7 B;  2BBZ A;  2YU0 A;  3CRD A;  4FH0 A;  4P4H A;  1A1Z A;  3T6P A;  4O7Q A;  2KN6 A;  3EZQ A;  2F1S A;  1A1W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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