2IBGE

Crystal structure of hedgehog bound to the fniii domains of ihog
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
149
structure length
142
Chain Sequence
YPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDRLMSKRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords CG9211-PA
publication title Structure of a heparin-dependent complex of Hedgehog and Ihog.
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 42
structure length 142
sequence length 149
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2006-09-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.10 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Muramoyl-pentapeptide Carboxypeptidase; domain 2 2ibgE00
4OX5A 4MUTA 3D1MA 4NT9A 3K7HB 4OAKA 3M1NA 2IBGE 1TZPA 3K7JB 2WFXA 3HO5H 3MXWA 4D0YA 1R44A 2WG4A 2WG3A 3K7GB 4F78A 1U10A 2WFRA 3N1PB 3N1FA 4MURA 4JIDA 4MUSA 4OXDA 1LBUA 3N1GA 3N1OA 4MUQA 4C4MA 5HNMA 3N1MB 4OX3A 4C4NA 2WFQA 3N1RA 3N1QA 2VO9A 4MPHA 3K7IB 1VHHA
chains in the Genus database with same CATH superfamily
4OX5A 2OSOA 4MUTA 2J3RB 3D1MA 4NT9A 3K7HB 4OAKA 2C0JA 2OSDA 2CFHA 3M1NA 2IBGE 1TZPA 3K7JB 2WFXA 2J3TA 3HO5H 3MXWA 4D0YA 2J3WD 1R44A 2WG4A 2WG3A 3K7GB 2CFHC 4F78A 1U10A 1SZ7A 2WFRA 3NJCA 3N1PB 2PWNA 3CUED 3N1FA 4JIDA 4MURA 2C0JB 2J3WB 1WC8A 3KXCA 4MUSA 4OXDA 1LBUA 2J3RA 2BJNA 3N1GA 3N1OA 2J3TB 4MUQA 3CUEB 4C4MA 5HNMA 3N1MB 4OX3A 3KXCC 4C4NA 2WFQA 3N1RA 3N1QA 2VO9A 1WC9A 4MPHA 3K7IB 1VHHA
chains in the Genus database with same CATH topology
4OX5A 4MUTA 3D1MA 4NT9A 3K7HB 4OAKA 3M1NA 2IBGE 1TZPA 3K7JB 2WFXA 3HO5H 3MXWA 4D0YA 1R44A 2WG4A 2WG3A 3K7GB 4F78A 1U10A 2WFRA 3N1PB 3N1FA 4MURA 4JIDA 4MUSA 4OXDA 1LBUA 3N1GA 3N1OA 4MUQA 4C4MA 5HNMA 3N1MB 4OX3A 4C4NA 2WFQA 3N1RA 3N1QA 2VO9A 4MPHA 3K7IB 1VHHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OX5 A;  4MUT A;  3D1M A;  4NT9 A;  3K7H B;  4OAK A;  3M1N A;  2IBG E;  1TZP A;  3K7J B;  2WFX A;  3HO5 H;  3MXW A;  4D0Y A;  1R44 A;  2WG4 A;  2WG3 A;  3K7G B;  4F78 A;  1U10 A;  2WFR A;  3N1P B;  3N1F A;  4MUR A;  4JID A;  4MUS A;  4OXD A;  1LBU A;  3N1G A;  3N1O A;  4MUQ A;  4C4M A;  5HNM A;  3N1M B;  4OX3 A;  4C4N A;  2WFQ A;  3N1R A;  3N1Q A;  2VO9 A;  4MPH A;  3K7I B;  1VHH A; 
#chains in the Genus database with same CATH topology
 4OX5 A;  2OSO A;  4MUT A;  2J3R B;  3D1M A;  4NT9 A;  3K7H B;  4OAK A;  2C0J A;  2OSD A;  2CFH A;  3M1N A;  2IBG E;  1TZP A;  3K7J B;  2WFX A;  2J3T A;  3HO5 H;  3MXW A;  4D0Y A;  2J3W D;  1R44 A;  2WG4 A;  2WG3 A;  3K7G B;  2CFH C;  4F78 A;  1U10 A;  1SZ7 A;  2WFR A;  3NJC A;  3N1P B;  2PWN A;  3CUE D;  3N1F A;  4JID A;  4MUR A;  2C0J B;  2J3W B;  1WC8 A;  3KXC A;  4MUS A;  4OXD A;  1LBU A;  2J3R A;  2BJN A;  3N1G A;  3N1O A;  2J3T B;  4MUQ A;  3CUE B;  4C4M A;  5HNM A;  3N1M B;  4OX3 A;  3KXC C;  4C4N A;  2WFQ A;  3N1R A;  3N1Q A;  2VO9 A;  1WC9 A;  4MPH A;  3K7I B;  1VHH A; 
#chains in the Genus database with same CATH homology
 4OX5 A;  4MUT A;  3D1M A;  4NT9 A;  3K7H B;  4OAK A;  3M1N A;  2IBG E;  1TZP A;  3K7J B;  2WFX A;  3HO5 H;  3MXW A;  4D0Y A;  1R44 A;  2WG4 A;  2WG3 A;  3K7G B;  4F78 A;  1U10 A;  2WFR A;  3N1P B;  3N1F A;  4MUR A;  4JID A;  4MUS A;  4OXD A;  1LBU A;  3N1G A;  3N1O A;  4MUQ A;  4C4M A;  5HNM A;  3N1M B;  4OX3 A;  4C4N A;  2WFQ A;  3N1R A;  3N1Q A;  2VO9 A;  4MPH A;  3K7I B;  1VHH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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