2IFCA

The structure of the binary complex of oxalateacetate with citrate synthase from the thermophilic archaeon thermolasma acidophilum
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
380
structure length
380
Chain Sequence
EEISKGLEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQELRKYKETVQKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMAASETKFKWNKDTDRDVAAEMIGRMSAITVNVYRHIMNMPAELPKPSDSYAESFLNAAFGRKATKEEIDAMNTALILYTDHEVPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQFDEIKDPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKVYEIATKLEDFGIKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVTGWQAHFIEYVEEQQRLIRPRAVYVGPAERKYVPIAER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Citrate Synthase
publication title To be anounced
rcsb
source organism Thermoplasma acidophilum
total genus 141
structure length 380
sequence length 380
chains with identical sequence B, C, D
ec nomenclature ec 2.3.3.16: Citrate synthase (unknown stereospecificity).
pdb deposition date 2006-09-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00285 Citrate_synt Citrate synthase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.230.10 Mainly Alpha Orthogonal Bundle Cytochrome p450-Terp; domain 2 Cytochrome P450-Terp, domain 2 2ifcA02
1.10.580.10 Mainly Alpha Orthogonal Bundle Citrate Synthase; domain 1 Citrate Synthase, domain 1 2ifcA01
1CSCA 2R9EA 5CTSA 4YBOA 1VGMA 1AMZA 1IXEA 1A59A 6CTSA 4E6YA 5CSCA 4JAEA 2CTSA 2H12A 4JAGA 1O7XA 4JAFA 1CSIA 1AJ8A 2IBPA 1CSHA 3TQGA 4CTSA 1AL6A 1CSRA 4CSCA 2C6XA 1VGPA 2CSCA 4G6BA 2R26A 4JADA 1OWCA 2IFCA 1CSSA 3MSUA 1NXEA 1IOMA 3ENJA 6CSCA 1OWBA 1CTSA 3O8JA 4TVMA 2P2WA 3CSCA 1NXGA 4XGHA 3HWKA 5CSCB
chains in the Genus database with same CATH superfamily
1CSCA 2R9EA 5CTSA 4YBOA 1VGMA 1AMZA 1IXEA 1A59A 6CTSA 4E6YA 5CSCA 4JAEA 2CTSA 2H12A 4JAGA 1O7XA 4JAFA 1CSIA 1AJ8A 2IBPA 1CSHA 3TQGA 4CTSA 1AL6A 1CSRA 4CSCA 2C6XA 1VGPA 2CSCA 4G6BA 2R26A 4JADA 1OWCA 2IFCA 1CSSA 3MSUA 1NXEA 1IOMA 3ENJA 6CSCA 1OWBA 1CTSA 3O8JA 4TVMA 2P2WA 3CSCA 1NXGA 4XGHA 3HWKA 5CSCB
chains in the Genus database with same CATH topology
1CSCA 2R9EA 5CTSA 4YBOA 1VGMA 1AMZA 1IXEA 1A59A 6CTSA 4E6YA 5CSCA 4JAEA 2CTSA 2H12A 4JAGA 1O7XA 4JAFA 1CSIA 1AJ8A 2IBPA 1CSHA 3TQGA 4CTSA 1AL6A 1CSRA 4CSCA 2C6XA 1VGPA 2CSCA 4G6BA 2R26A 4JADA 1OWCA 2IFCA 1CSSA 3MSUA 1NXEA 1IOMA 3ENJA 6CSCA 1OWBA 1CTSA 3O8JA 4TVMA 2P2WA 3CSCA 1NXGA 4XGHA 3HWKA 5CSCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CSC A;  2R9E A;  5CTS A;  4YBO A;  1VGM A;  1AMZ A;  1IXE A;  1A59 A;  6CTS A;  4E6Y A;  5CSC A;  4JAE A;  2CTS A;  2H12 A;  4JAG A;  1O7X A;  4JAF A;  1CSI A;  1AJ8 A;  2IBP A;  1CSH A;  3TQG A;  4CTS A;  1AL6 A;  1CSR A;  4CSC A;  2C6X A;  1VGP A;  2CSC A;  4G6B A;  2R26 A;  4JAD A;  1OWC A;  2IFC A;  1CSS A;  3MSU A;  1NXE A;  1IOM A;  3ENJ A;  6CSC A;  1OWB A;  1CTS A;  3O8J A;  4TVM A;  2P2W A;  3CSC A;  1NXG A;  4XGH A;  3HWK A;  5CSC B; 
#chains in the Genus database with same CATH topology
 1CSC A;  2R9E A;  5CTS A;  4YBO A;  1VGM A;  1AMZ A;  1IXE A;  1A59 A;  6CTS A;  4E6Y A;  5CSC A;  4JAE A;  2CTS A;  2H12 A;  4JAG A;  1O7X A;  4JAF A;  1CSI A;  1AJ8 A;  2IBP A;  1CSH A;  3TQG A;  4CTS A;  1AL6 A;  1CSR A;  4CSC A;  2C6X A;  1VGP A;  2CSC A;  4G6B A;  2R26 A;  4JAD A;  1OWC A;  2IFC A;  1CSS A;  3MSU A;  1NXE A;  1IOM A;  3ENJ A;  6CSC A;  1OWB A;  1CTS A;  3O8J A;  4TVM A;  2P2W A;  3CSC A;  1NXG A;  4XGH A;  3HWK A;  5CSC B; 
#chains in the Genus database with same CATH homology
 1CSC A;  2R9E A;  5CTS A;  4YBO A;  1VGM A;  1AMZ A;  1IXE A;  1A59 A;  6CTS A;  4E6Y A;  5CSC A;  4JAE A;  2CTS A;  2H12 A;  4JAG A;  1O7X A;  4JAF A;  1CSI A;  1AJ8 A;  2IBP A;  1CSH A;  3TQG A;  4CTS A;  1AL6 A;  1CSR A;  4CSC A;  2C6X A;  1VGP A;  2CSC A;  4G6B A;  2R26 A;  4JAD A;  1OWC A;  2IFC A;  1CSS A;  3MSU A;  1NXE A;  1IOM A;  3ENJ A;  6CSC A;  1OWB A;  1CTS A;  3O8J A;  4TVM A;  2P2W A;  3CSC A;  1NXG A;  4XGH A;  3HWK A;  5CSC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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