2IFVA

Crystal structure of an active site mutant, c473d, of cdc25b phosphatase catalytic domain
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
175
structure length
175
Chain Sequence
MELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHDEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRLKTRSW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords M-phase inducer phosphatase 2
publication title Kinetic and structural studies of specific protein-protein interactions in substrate catalysis by Cdc25B phosphatase.
pubmed doi rcsb
source organism Homo sapiens
total genus 62
structure length 175
sequence length 175
ec nomenclature ec 3.1.3.48: Protein-tyrosine-phosphatase.
pdb deposition date 2006-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2ifvA00
2WLXA 3I3UA 1YMLA 3HWIA 3HZUA 3G5JA 3AAYA 2IFDA 1H4KX 3I2VA 1DP2A 2FSXA 3FOJA 1RHSA 3D1PA 3TG1B 3O3WA 1ORBA 1T3KA 5LAOA 3OP3A 2A2KA 3OLHA 1BOHA 2MRMA 3MZZA 5HPAA 2K0ZA 3IWHA 5HBOA 2VSWA 1RHDA 2JTQA 2WLRA 1CWTA 1TQ1A 1VEEA 3FNJA 3TP9A 3ICRA 1OKGA 3HIXA 1QXNA 1WHBA 3GK5A 1CWRA 1WV9A 2EG4A 1QB0A 1YT8A 5HBQA 2HHGA 4WH7A 3AAXA 2GWFA 1UARA 2MOLA 2DCQA 3NHVA 2KL3A 1YMDA 3R2UA 2OUCA 3ILMA 3IPPA 1YM9A 2IFVA 2UZQA 4OCGA 5HBLA 1BOIA 2JTSA 2EG4B 4F67A 1CWSA 3ICTA 4JGTA 1YS0A 3FLHA 3UTNX 2JTRA 3ICSA 4WH9A 2EG3A 5HBPA 2MOIA 3NT6A 3IPOA 3K9RA 3NTDA 1GMXA 3P3AA 1HZMA 1H4MX 1URHA 3TG3A 1C25A 1YMKA 1E0CA 2J6PA 5LAMA 2ORAA 3NTAA 3FS5A 1GN0A 3F4AA
chains in the Genus database with same CATH superfamily
2WLXA 3I3UA 1YMLA 3HWIA 3HZUA 3G5JA 3AAYA 2IFDA 1H4KX 3I2VA 1DP2A 2FSXA 3FOJA 1RHSA 3D1PA 3TG1B 3O3WA 1ORBA 1T3KA 5LAOA 3OP3A 2A2KA 3OLHA 1BOHA 2MRMA 3MZZA 5HPAA 2K0ZA 3IWHA 5HBOA 2VSWA 1RHDA 2JTQA 2WLRA 1CWTA 1TQ1A 1VEEA 3FNJA 3TP9A 3ICRA 1OKGA 3HIXA 1QXNA 1WHBA 3GK5A 1CWRA 1WV9A 2EG4A 1QB0A 1YT8A 5HBQA 2HHGA 4WH7A 3AAXA 2GWFA 1UARA 2MOLA 2DCQA 3NHVA 2KL3A 1YMDA 3R2UA 2OUCA 3ILMA 3IPPA 1YM9A 2IFVA 2UZQA 4OCGA 5HBLA 1BOIA 2JTSA 2EG4B 4F67A 1CWSA 3ICTA 4JGTA 1YS0A 3FLHA 3UTNX 2JTRA 3ICSA 4WH9A 2EG3A 5HBPA 2Q82A 2MOIA 3NT6A 3IPOA 3K9RA 3NTDA 1GMXA 3P3AA 1HZMA 1H4MX 1URHA 3TG3A 1C25A 1YMKA 1E0CA 2J6PA 5LAMA 2ORAA 3NTAA 3FS5A 1GN0A 3F4AA
chains in the Genus database with same CATH topology
2WLXA 3I3UA 1YMLA 3HWIA 3HZUA 3G5JA 3AAYA 2IFDA 1H4KX 3I2VA 1DP2A 2FSXA 3FOJA 1RHSA 3D1PA 3TG1B 3O3WA 1ORBA 1T3KA 5LAOA 3OP3A 2A2KA 3OLHA 1BOHA 2MRMA 3MZZA 5HPAA 2K0ZA 3IWHA 5HBOA 2VSWA 1RHDA 2JTQA 2WLRA 1CWTA 1TQ1A 1VEEA 3FNJA 3TP9A 3ICRA 1OKGA 3HIXA 1QXNA 1WHBA 3GK5A 1CWRA 1WV9A 2EG4A 1QB0A 1YT8A 5HBQA 2HHGA 4WH7A 3AAXA 2GWFA 1UARA 2MOLA 2DCQA 3NHVA 2KL3A 1YMDA 3R2UA 2OUCA 3ILMA 3IPPA 1YM9A 2IFVA 2UZQA 4OCGA 5HBLA 1BOIA 2JTSA 2EG4B 4F67A 1CWSA 3ICTA 4JGTA 1YS0A 3FLHA 3UTNX 2JTRA 3ICSA 4WH9A 2EG3A 5HBPA 2MOIA 3NT6A 3IPOA 3K9RA 3NTDA 1GMXA 3P3AA 1HZMA 1H4MX 1URHA 3TG3A 1C25A 1YMKA 1E0CA 2J6PA 5LAMA 2ORAA 3NTAA 3FS5A 1GN0A 3F4AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WLX A;  3I3U A;  1YML A;  3HWI A;  3HZU A;  3G5J A;  3AAY A;  2IFD A;  1H4K X;  3I2V A;  1DP2 A;  2FSX A;  3FOJ A;  1RHS A;  3D1P A;  3TG1 B;  3O3W A;  1ORB A;  1T3K A;  5LAO A;  3OP3 A;  2A2K A;  3OLH A;  1BOH A;  2MRM A;  3MZZ A;  5HPA A;  2K0Z A;  3IWH A;  5HBO A;  2VSW A;  1RHD A;  2JTQ A;  2WLR A;  1CWT A;  1TQ1 A;  1VEE A;  3FNJ A;  3TP9 A;  3ICR A;  1OKG A;  3HIX A;  1QXN A;  1WHB A;  3GK5 A;  1CWR A;  1WV9 A;  2EG4 A;  1QB0 A;  1YT8 A;  5HBQ A;  2HHG A;  4WH7 A;  3AAX A;  2GWF A;  1UAR A;  2MOL A;  2DCQ A;  3NHV A;  2KL3 A;  1YMD A;  3R2U A;  2OUC A;  3ILM A;  3IPP A;  1YM9 A;  2IFV A;  2UZQ A;  4OCG A;  5HBL A;  1BOI A;  2JTS A;  2EG4 B;  4F67 A;  1CWS A;  3ICT A;  4JGT A;  1YS0 A;  3FLH A;  3UTN X;  2JTR A;  3ICS A;  4WH9 A;  2EG3 A;  5HBP A;  2MOI A;  3NT6 A;  3IPO A;  3K9R A;  3NTD A;  1GMX A;  3P3A A;  1HZM A;  1H4M X;  1URH A;  3TG3 A;  1C25 A;  1YMK A;  1E0C A;  2J6P A;  5LAM A;  2ORA A;  3NTA A;  3FS5 A;  1GN0 A;  3F4A A; 
#chains in the Genus database with same CATH topology
 2WLX A;  3I3U A;  1YML A;  3HWI A;  3HZU A;  3G5J A;  3AAY A;  2IFD A;  1H4K X;  3I2V A;  1DP2 A;  2FSX A;  3FOJ A;  1RHS A;  3D1P A;  3TG1 B;  3O3W A;  1ORB A;  1T3K A;  5LAO A;  3OP3 A;  2A2K A;  3OLH A;  1BOH A;  2MRM A;  3MZZ A;  5HPA A;  2K0Z A;  3IWH A;  5HBO A;  2VSW A;  1RHD A;  2JTQ A;  2WLR A;  1CWT A;  1TQ1 A;  1VEE A;  3FNJ A;  3TP9 A;  3ICR A;  1OKG A;  3HIX A;  1QXN A;  1WHB A;  3GK5 A;  1CWR A;  1WV9 A;  2EG4 A;  1QB0 A;  1YT8 A;  5HBQ A;  2HHG A;  4WH7 A;  3AAX A;  2GWF A;  1UAR A;  2MOL A;  2DCQ A;  3NHV A;  2KL3 A;  1YMD A;  3R2U A;  2OUC A;  3ILM A;  3IPP A;  1YM9 A;  2IFV A;  2UZQ A;  4OCG A;  5HBL A;  1BOI A;  2JTS A;  2EG4 B;  4F67 A;  1CWS A;  3ICT A;  4JGT A;  1YS0 A;  3FLH A;  3UTN X;  2JTR A;  3ICS A;  4WH9 A;  2EG3 A;  5HBP A;  2Q82 A;  2MOI A;  3NT6 A;  3IPO A;  3K9R A;  3NTD A;  1GMX A;  3P3A A;  1HZM A;  1H4M X;  1URH A;  3TG3 A;  1C25 A;  1YMK A;  1E0C A;  2J6P A;  5LAM A;  2ORA A;  3NTA A;  3FS5 A;  1GN0 A;  3F4A A; 
#chains in the Genus database with same CATH homology
 2WLX A;  3I3U A;  1YML A;  3HWI A;  3HZU A;  3G5J A;  3AAY A;  2IFD A;  1H4K X;  3I2V A;  1DP2 A;  2FSX A;  3FOJ A;  1RHS A;  3D1P A;  3TG1 B;  3O3W A;  1ORB A;  1T3K A;  5LAO A;  3OP3 A;  2A2K A;  3OLH A;  1BOH A;  2MRM A;  3MZZ A;  5HPA A;  2K0Z A;  3IWH A;  5HBO A;  2VSW A;  1RHD A;  2JTQ A;  2WLR A;  1CWT A;  1TQ1 A;  1VEE A;  3FNJ A;  3TP9 A;  3ICR A;  1OKG A;  3HIX A;  1QXN A;  1WHB A;  3GK5 A;  1CWR A;  1WV9 A;  2EG4 A;  1QB0 A;  1YT8 A;  5HBQ A;  2HHG A;  4WH7 A;  3AAX A;  2GWF A;  1UAR A;  2MOL A;  2DCQ A;  3NHV A;  2KL3 A;  1YMD A;  3R2U A;  2OUC A;  3ILM A;  3IPP A;  1YM9 A;  2IFV A;  2UZQ A;  4OCG A;  5HBL A;  1BOI A;  2JTS A;  2EG4 B;  4F67 A;  1CWS A;  3ICT A;  4JGT A;  1YS0 A;  3FLH A;  3UTN X;  2JTR A;  3ICS A;  4WH9 A;  2EG3 A;  5HBP A;  2MOI A;  3NT6 A;  3IPO A;  3K9R A;  3NTD A;  1GMX A;  3P3A A;  1HZM A;  1H4M X;  1URH A;  3TG3 A;  1C25 A;  1YMK A;  1E0C A;  2J6P A;  5LAM A;  2ORA A;  3NTA A;  3FS5 A;  1GN0 A;  3F4A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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