2IGPA

Crystal structure of hec1 ch domain
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
114
structure length
114
Chain Sequence
DPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Ndc80/HEC1 complex is a contact point for kinetochore-microtubule attachment.
pubmed doi rcsb
molecule tags Cell cycle
source organism Homo sapiens
molecule keywords Retinoblastoma-associated protein HEC
total genus 33
structure length 114
sequence length 114
ec nomenclature
pdb deposition date 2006-09-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.30 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 2igpA00
2VE7A 2IGPA
chains in the Genus database with same CATH superfamily
2EE7A 1QAGA 1P5SA 2RR8A 1EUVA 1V5KA 2D86A 1VKAA 2IGPA 2D88A 1AA2A 1SH5A 3KMUB 3VP7A 3REPB 4TXIA 1P2XA 4Q57B 1H67A 3HOPA 4B7LA 2QJZA 3FERA 3HOCA 3KY9A 2WE6A 4EDMA 2WA5A 1WYLA 1WYQA 4EDLA 2HL9A 3I6XA 2K3SA 3EAYA 2EQOA 5J8EA 2EYIA 1DXXA 3JARM 3CO1A 2D89A 5A4BA 4Q58A 3HORA 1UEGA 1MB8A 1WYPA 1BKRA 5A36A 2DK9A 2WA6A 2R8UA 1WYOA 2WFNA 1WIXA 2R0OA 5L0OA 2D87A 1WKUA 3JAKM 1TJTA 2JV9A 2HL8A 4EDNA 2HKPA 2VZCA 1SH6A 4TXKA 2VZDA 2K2RA 2L3GA 2VE7C 2WA7A 1WYRA 1RT8A 1PA7A 2VE7A 3F7PA 3KMWB 2E9KA 2YRNA 1AOAA 5FMTA 4LVRA 1WJOA 5A38A 5A37A 2VZIB 2EYNA 1UJOA 2VZGB 4DDPA 4Q59A 2D85A 5FMUA 4LVPA 1WYNA 3JALM 1WYMA 2QJXA 2WDTA 5BVRA 1BHDA 1PXYA
chains in the Genus database with same CATH topology
2HKPA 2EQOA 4DDPA 2HL9A 5FMTA 2IGPA 2VE7A 2WDTA 4LVRA 3EAYA 5FMUA 2HL8A 2WE6A 2VE7C 3VP7A 4LVPA 1EUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VE7 A;  2IGP A; 
#chains in the Genus database with same CATH topology
 2EE7 A;  1QAG A;  1P5S A;  2RR8 A;  1EUV A;  1V5K A;  2D86 A;  1VKA A;  2IGP A;  2D88 A;  1AA2 A;  1SH5 A;  3KMU B;  3VP7 A;  3REP B;  4TXI A;  1P2X A;  4Q57 B;  1H67 A;  3HOP A;  4B7L A;  2QJZ A;  3FER A;  3HOC A;  3KY9 A;  2WE6 A;  4EDM A;  2WA5 A;  1WYL A;  1WYQ A;  4EDL A;  2HL9 A;  3I6X A;  2K3S A;  3EAY A;  2EQO A;  5J8E A;  2EYI A;  1DXX A;  3JAR M;  3CO1 A;  2D89 A;  5A4B A;  4Q58 A;  3HOR A;  1UEG A;  1MB8 A;  1WYP A;  1BKR A;  5A36 A;  2DK9 A;  2WA6 A;  2R8U A;  1WYO A;  2WFN A;  1WIX A;  2R0O A;  5L0O A;  2D87 A;  1WKU A;  3JAK M;  1TJT A;  2JV9 A;  2HL8 A;  4EDN A;  2HKP A;  2VZC A;  1SH6 A;  4TXK A;  2VZD A;  2K2R A;  2L3G A;  2VE7 C;  2WA7 A;  1WYR A;  1RT8 A;  1PA7 A;  2VE7 A;  3F7P A;  3KMW B;  2E9K A;  2YRN A;  1AOA A;  5FMT A;  4LVR A;  1WJO A;  5A38 A;  5A37 A;  2VZI B;  2EYN A;  1UJO A;  2VZG B;  4DDP A;  4Q59 A;  2D85 A;  5FMU A;  4LVP A;  1WYN A;  3JAL M;  1WYM A;  2QJX A;  2WDT A;  5BVR A;  1BHD A;  1PXY A; 
#chains in the Genus database with same CATH homology
 2HKP A;  2EQO A;  4DDP A;  2HL9 A;  5FMT A;  2IGP A;  2VE7 A;  2WDT A;  4LVR A;  3EAY A;  5FMU A;  2HL8 A;  2WE6 A;  2VE7 C;  3VP7 A;  4LVP A;  1EUV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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