2II2A

Crystal structure of alpha-11 giardin
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
304
structure length
304
Chain Sequence
YGDAIPEVKAILEAKNEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIKNGPYEDVMALGWDCNISARVNVIKKAMKNVNDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAASYLCHLAIRENRTPRGSVASDAEVLKHNLIDADEPDHEAVVRLIITSTADEYKEINHRFEVLTGKSVQEAIETRYADKENARGLCIAHYYNLAPARAVAYAFHSAVETQNDDMAYEQAARITGLFHDLHKFAWVHYACWGVMRDDILSRFQSKEANKVNFRDACLMFWKLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Alpha-11 giardin
publication title Apo and Calcium-bound Crystal Structures of Alpha-11 Giardin, an Unusual Annexin from Giardia lamblia
pubmed doi rcsb
source organism Giardia intestinalis
total genus 128
structure length 304
sequence length 304
ec nomenclature
pdb deposition date 2006-09-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2ii2A04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2ii2A01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2ii2A02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2ii2A03
1YJ0A 1W3WA 2HYUA 1AIIA 2HYWA 4EVFA 1HVDA 1W7BA 4EVHA 1HAKA 1YIIA 1BC0A 2IE6A 4MDUA 1AXNA 1BCYA 1AVCA 1HVGA 2H0MA 2XO2A 1BO9A 2H0LA 1MCXA 2H0KA 1DM5A 1A8BA 2ZHIA 2Q4CA 1N00A 1HVEA 2RANA 1ANNA 1BC1A 1N42A 1SAVA 1W45A 2HYVA 2ZHJA 2IE7A 2ZOCA 1DK5A 1N44A 3BRXA 2IICA 1AOWA 2XO3A 1ANXA 1BCZA 1HVFA 1I4AA 1YCNA 1AVRA 1BC3A 1BCWA 1A8AA 1M9IA 2II2A 1ANWA 1AEIA 1XJLA 4MDVA 1AVHA 1HM6A 4X9PA 1G5NA 1N41A 4HREA 1ALAA
chains in the Genus database with same CATH superfamily
1QC7A 4JMOA 1XSZA 1S9DE 4KMUX 1AVCA 2H0MA 4C7PA 4C0AA 2VXGA 2H0KA 2Q4CA 3ABSA 4JWLA 1HVEA 1R8ME 3BRXA 3ABRA 2XO3A 1BCZA 4JK1X 1BCWA 1ANWA 4X9PA 1G5NA 3AJCA 4HREA 4JMIA 4Z21A 1YJ0A 3ABQA 1AIIA 1R8QE 1RE0B 1HVDA 3ANYA 4MDUA 1BO9A 2XO2A 3ABOA 1MCXA 2ZHIA 3SOHB 3USWA 2QEZA 3L8NA 2IE7A 4OIYA 1DK5A 1UPTB 1HVFA 3TW5A 1M9IA 3USYA 4MDVA 4A4PA 1N41A 1Q8DA 3HJLA 2R09A 4JXHA 2HSNA 1W3WA 2HYWA 2OY9A 3LTLA 4EVFA 4FQ0C 1HAKA 4KN4X 1AXNA 1HVGA 1LKVX 4KN7X 1C1KA 1N00A 1ANNA 1BC1A 1SAVA 1W45A 2HYVA 2R0DA 2ZHJA 2ZOCA 4D7QA 1ANXA 1YCNA 1AVRA 4FHRB 1BC3A 2II2A 1XJLA 1AVHA 1HM6A 3SWVA 4D7RA 4L5MA 2HYUA 1W7BA 4EVHA 1YIIA 1BC0A 1R8SE 1XT0B 2IE6A 1BCYA 1BC9A 2H0LA 1DM5A 1A8BA 1PBVA 4Q2SA 2RANA 1N42A 1N44A 2K6XA 2IICA 1AOWA 1I4AA 1KU1A 3AO0A 1A8AA 1AEIA 1YGMA 1R4AE 1ALAA
chains in the Genus database with same CATH topology
1YJ0A 1W3WA 2HYUA 1AIIA 2HYWA 4EVFA 1HVDA 1W7BA 4EVHA 1HAKA 1YIIA 1BC0A 2IE6A 4MDUA 1AXNA 1BCYA 1AVCA 1HVGA 2H0MA 2XO2A 1BO9A 2H0LA 1MCXA 2H0KA 1DM5A 1A8BA 2ZHIA 2Q4CA 1N00A 1HVEA 2RANA 1ANNA 1BC1A 1N42A 1SAVA 1W45A 2HYVA 2ZHJA 2IE7A 2ZOCA 1DK5A 1N44A 3BRXA 2IICA 1AOWA 2XO3A 1ANXA 1BCZA 1HVFA 1I4AA 1YCNA 1AVRA 1BC3A 1BCWA 1A8AA 1M9IA 2II2A 1ANWA 1AEIA 1XJLA 4MDVA 1AVHA 1HM6A 4X9PA 1G5NA 1N41A 4HREA 1ALAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YJ0 A;  1W3W A;  2HYU A;  1AII A;  2HYW A;  4EVF A;  1HVD A;  1W7B A;  4EVH A;  1HAK A;  1YII A;  1BC0 A;  2IE6 A;  4MDU A;  1AXN A;  1BCY A;  1AVC A;  1HVG A;  2H0M A;  2XO2 A;  1BO9 A;  2H0L A;  1MCX A;  2H0K A;  1DM5 A;  1A8B A;  2ZHI A;  2Q4C A;  1N00 A;  1HVE A;  2RAN A;  1ANN A;  1BC1 A;  1N42 A;  1SAV A;  1W45 A;  2HYV A;  2ZHJ A;  2IE7 A;  2ZOC A;  1DK5 A;  1N44 A;  3BRX A;  2IIC A;  1AOW A;  2XO3 A;  1ANX A;  1BCZ A;  1HVF A;  1I4A A;  1YCN A;  1AVR A;  1BC3 A;  1BCW A;  1A8A A;  1M9I A;  2II2 A;  1ANW A;  1AEI A;  1XJL A;  4MDV A;  1AVH A;  1HM6 A;  4X9P A;  1G5N A;  1N41 A;  4HRE A;  1ALA A; 
#chains in the Genus database with same CATH topology
 1QC7 A;  4JMO A;  1XSZ A;  1S9D E;  4KMU X;  1AVC A;  2H0M A;  4C7P A;  4C0A A;  2VXG A;  2H0K A;  2Q4C A;  3ABS A;  4JWL A;  1HVE A;  1R8M E;  3BRX A;  3ABR A;  2XO3 A;  1BCZ A;  4JK1 X;  1BCW A;  1ANW A;  4X9P A;  1G5N A;  3AJC A;  4HRE A;  4JMI A;  4Z21 A;  1YJ0 A;  3ABQ A;  1AII A;  1R8Q E;  1RE0 B;  1HVD A;  3ANY A;  4MDU A;  1BO9 A;  2XO2 A;  3ABO A;  1MCX A;  2ZHI A;  3SOH B;  3USW A;  2QEZ A;  3L8N A;  2IE7 A;  4OIY A;  1DK5 A;  1UPT B;  1HVF A;  3TW5 A;  1M9I A;  3USY A;  4MDV A;  4A4P A;  1N41 A;  1Q8D A;  3HJL A;  2R09 A;  4JXH A;  2HSN A;  1W3W A;  2HYW A;  2OY9 A;  3LTL A;  4EVF A;  4FQ0 C;  1HAK A;  4KN4 X;  1AXN A;  1HVG A;  1LKV X;  4KN7 X;  1C1K A;  1N00 A;  1ANN A;  1BC1 A;  1SAV A;  1W45 A;  2HYV A;  2R0D A;  2ZHJ A;  2ZOC A;  4D7Q A;  1ANX A;  1YCN A;  1AVR A;  4FHR B;  1BC3 A;  2II2 A;  1XJL A;  1AVH A;  1HM6 A;  3SWV A;  4D7R A;  4L5M A;  2HYU A;  1W7B A;  4EVH A;  1YII A;  1BC0 A;  1R8S E;  1XT0 B;  2IE6 A;  1BCY A;  1BC9 A;  2H0L A;  1DM5 A;  1A8B A;  1PBV A;  4Q2S A;  2RAN A;  1N42 A;  1N44 A;  2K6X A;  2IIC A;  1AOW A;  1I4A A;  1KU1 A;  3AO0 A;  1A8A A;  1AEI A;  1YGM A;  1R4A E;  1ALA A; 
#chains in the Genus database with same CATH homology
 1YJ0 A;  1W3W A;  2HYU A;  1AII A;  2HYW A;  4EVF A;  1HVD A;  1W7B A;  4EVH A;  1HAK A;  1YII A;  1BC0 A;  2IE6 A;  4MDU A;  1AXN A;  1BCY A;  1AVC A;  1HVG A;  2H0M A;  2XO2 A;  1BO9 A;  2H0L A;  1MCX A;  2H0K A;  1DM5 A;  1A8B A;  2ZHI A;  2Q4C A;  1N00 A;  1HVE A;  2RAN A;  1ANN A;  1BC1 A;  1N42 A;  1SAV A;  1W45 A;  2HYV A;  2ZHJ A;  2IE7 A;  2ZOC A;  1DK5 A;  1N44 A;  3BRX A;  2IIC A;  1AOW A;  2XO3 A;  1ANX A;  1BCZ A;  1HVF A;  1I4A A;  1YCN A;  1AVR A;  1BC3 A;  1BCW A;  1A8A A;  1M9I A;  2II2 A;  1ANW A;  1AEI A;  1XJL A;  4MDV A;  1AVH A;  1HM6 A;  4X9P A;  1G5N A;  1N41 A;  4HRE A;  1ALA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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