2IM5A

Crystal structure of nicotinate phosphoribosyltransferase from porphyromonas gingivalis
Total Genus 144
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
389
structure length
389
Chain Sequence
IIRSILDTDLYKFTTGYAYAKLFPRAYGEFRFIDRNRQGFTEEFAELVRGEIRAMAALSLTRDEKEFLQRELPYLPPIYIDFLDGFRFDPEEVTVSIDAQGHLDIRAQGLLYRVTLWETPILAVISELYYRFIGAEPDWKQVEEVTRSKGELMREHRATFSIFGMRRRFSLEVEDRVTDILKQYAGESLFGTSNVHLAHKHGLRVSGTHPHEWIQFHGAIYGYKMANYVAMEDWINVYDGDLGTVLTDTYTTDVFMRNFSKKHAMLFTSLRHDSGDPEIFIEKAVRRYEELRVDPKIKYIIFSDSLTPQRAIEIQKLCAGRIKASFGIGTNLTNDVGGGVEPLNIVMKLWKCKMTAKDDWHYCVKLSDVDGKHTGEPEEILLAMNTLGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Nicotinate phosphoribosyltransferase
publication title Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas gingivalis
rcsb
source organism Porphyromonas gingivalis
total genus 144
structure length 389
sequence length 389
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2006-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04095 NAPRTase Nicotinate phosphoribosyltransferase (NAPRTase) family
A PF17767 NAPRTase_N Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.140.10 Alpha Beta Alpha-Beta Barrel nicotinate phosphoribosyltransferase nicotinate phosphoribosyltransferase 2im5A00
4MZYA 3OS4A 1YBEA 1VLPA 4YUBA 1YIRA 2IM5A 2F7FA 4HL7A
chains in the Genus database with same CATH superfamily
4MZYA 3OS4A 1YBEA 1VLPA 4YUBA 1YIRA 2IM5A 2F7FA 4HL7A
chains in the Genus database with same CATH topology
4MZYA 3OS4A 1YBEA 1VLPA 4YUBA 1YIRA 2IM5A 2F7FA 4HL7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MZY A;  3OS4 A;  1YBE A;  1VLP A;  4YUB A;  1YIR A;  2IM5 A;  2F7F A;  4HL7 A; 
#chains in the Genus database with same CATH topology
 4MZY A;  3OS4 A;  1YBE A;  1VLP A;  4YUB A;  1YIR A;  2IM5 A;  2F7F A;  4HL7 A; 
#chains in the Genus database with same CATH homology
 4MZY A;  3OS4 A;  1YBE A;  1VLP A;  4YUB A;  1YIR A;  2IM5 A;  2F7F A;  4HL7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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