2IMSA

The x-ray structure of a bak homodimer reveals an inhibitory zinc binding site
Total Genus 57
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
163
structure length
163
Chain Sequence
LPSASEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEMVTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAAL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Apoptosis
molecule keywords Apoptosis regulator BAK
publication title The X-Ray Structure of a BAK Homodimer Reveals an Inhibitory Zinc Binding Site
pubmed doi rcsb
source organism Homo sapiens
total genus 57
structure length 163
sequence length 163
ec nomenclature
pdb deposition date 2006-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 2imsA00
1K3KA 2B48A 3CVAX 4YJ4A 2NLAA 3KJ1A 2KBWA 2LR1A 4BD7A 1O0LA 2BIDA 5FMIA 3IIGA 3DVUA 2MEJA 1AF3A 4BD8A 4ZIIA 3D7VA 5KU9A 4K5BC 2BZWA 2VOFA 1YSIA 1WSXA 2VOHA 3IHEA 2KUAA 2WH6A 1YSNA 3I1HA 2RODA 2ROCA 1R2HA 2K7WA 3MK8A 3IHCA 3MQPA 2O22A 4OYDA 5FC4A 3QBRA 4S0OA 1R2IA 1R2DA 3KJ0A 3KJ2A 1R2EA 2IMTA 3IO9A 4ZIEA 2ABOA 3WIYA 4HW3A 4ZEQA 4QNQA 2XA0A 2VOIA 3WIXA 1OHUA 4G35A 2VM6A 1ZY3A 2MHSA 5KTGA 2M5BA 1R2GA 4BPJA 3BL2A 4ZIFA 1LXLA 4ZIHA 4S0PA 3ILCA 5FDRA 5FDOA 4B4SA 1DDBA 2IMSA 4HW4A 4ZBFA 4ZIGA 4BD6A 3KZ0A 2O2NA 5C3FA 1MK3A 2A5YA 1PQ1A 1F16A 1GJHA 4BPIA 3PK1A 2ME8A 2XPXA 2YV6A 2O21A 2PQKA 2JCNA 5IF4A 4U2UA 4BDUA 4OQ6A 4U2VA 2W3LA 4ZBIA 4YK9A 4MI8A 1MAZA 4HW2A 3IIHA 4QVXA 2VOGA 2JM6B 4WMRA 1Q59A 2V6QA 1YSWA 4BD2A 1G5MA 4OQ5A 1BXLA 1G5JA 5JSBA 5C6HA 2NL9A 2O2MA 1PQ0A 5IEZA 3IHDA 1YSGA 2O2FA 1TY4A
chains in the Genus database with same CATH superfamily
1K3KA 4M0SA 2B48A 3CVAX 4YJ4A 2NLAA 3KJ1A 2KBWA 2LR1A 4BD7A 1O0LA 2BIDA 5FMIA 3IIGA 3DVUA 2MEJA 1AF3A 2VVWA 4BD8A 4ZIIA 3D7VA 5KU9A 4K5BC 2BZWA 2VOFA 2O42A 1YSIA 1WSXA 4BBDA 2VOHA 3IHEA 2KUAA 2I39A 2WH6A 1YSNA 3I1HA 3JRVA 2RODA 2VTYA 2ROCA 1R2HA 2K7WA 3MK8A 3IHCA 4BBBA 2VVYA 3MQPA 4UF3A 2O22A 4OYDA 5FC4A 3QBRA 4D2LA 4S0OA 1R2IA 1R2DA 3KJ0A 3KJ2A 1R2EA 2IMTA 3IO9A 4ZIEA 2ABOA 3WIYA 4LQKA 4HW3A 2JBXA 4ZEQA 4QNQA 2XA0A 2VOIA 3WIXA 1OHUA 4G35A 2VM6A 1ZY3A 2MHSA 5KTGA 2K36A 2M5BA 1R2GA 4BPJA 3BL2A 4ZIFA 1LXLA 4ZIHA 4S0PA 3ILCA 5FDRA 2JBYA 5FDOA 4B4SA 1DDBA 2IMSA 4HW4A 4ZBFA 4ZIGA 4BD6A 3KZ0A 2O2NA 5C3FA 2VVXA 1MK3A 2A5YA 1PQ1A 1F16A 1GJHA 4BPIA 3PK1A 2ME8A 2XPXA 2YV6A 2O21A 2PQKA 2JCNA 5IF4A 4UF1A 4U2UA 4BDUA 4OQ6A 4U2VA 2W3LA 4ZBIA 4YK9A 4MI8A 1MAZA 4HW2A 3IIHA 4QVXA 2VOGA 2JM6B 4WMRA 1Q59A 2V6QA 1YSWA 4BD2A 2UXEA 1G5MA 4OQ5A 4UF2A 1BXLA 1G5JA 5JSBA 4BBCA 5C6HA 2NL9A 2O2MA 1PQ0A 5IEZA 3IHDA 1YSGA 2O2FA 1TY4A 4D2MA
chains in the Genus database with same CATH topology
1K3KA 2B48A 3CVAX 4YJ4A 2NLAA 3KJ1A 2KBWA 2LR1A 4BD7A 1O0LA 2BIDA 5FMIA 3IIGA 3DVUA 2MEJA 1AF3A 4BD8A 4ZIIA 3D7VA 5KU9A 4K5BC 2BZWA 2VOFA 1YSIA 1WSXA 2VOHA 3IHEA 2KUAA 2WH6A 1YSNA 3I1HA 2RODA 2ROCA 1R2HA 2K7WA 3MK8A 3IHCA 3MQPA 2O22A 4OYDA 5FC4A 3QBRA 4S0OA 1R2IA 1R2DA 3KJ0A 3KJ2A 1R2EA 2IMTA 3IO9A 4ZIEA 2ABOA 3WIYA 4HW3A 4ZEQA 4QNQA 2XA0A 2VOIA 3WIXA 1OHUA 4G35A 2VM6A 1ZY3A 2MHSA 5KTGA 2M5BA 1R2GA 4BPJA 3BL2A 4ZIFA 1LXLA 4ZIHA 4S0PA 3ILCA 5FDRA 5FDOA 4B4SA 1DDBA 2IMSA 4HW4A 4ZBFA 4ZIGA 4BD6A 3KZ0A 2O2NA 5C3FA 1MK3A 2A5YA 1PQ1A 1F16A 1GJHA 4BPIA 3PK1A 2ME8A 2XPXA 2YV6A 2O21A 2PQKA 2JCNA 5IF4A 4U2UA 4BDUA 4OQ6A 4U2VA 2W3LA 4ZBIA 4YK9A 4MI8A 1MAZA 4HW2A 3IIHA 4QVXA 2VOGA 2JM6B 4WMRA 1Q59A 2V6QA 1YSWA 4BD2A 1G5MA 4OQ5A 1BXLA 1G5JA 5JSBA 5C6HA 2NL9A 2O2MA 1PQ0A 5IEZA 3IHDA 1YSGA 2O2FA 1TY4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K3K A;  2B48 A;  3CVA X;  4YJ4 A;  2NLA A;  3KJ1 A;  2KBW A;  2LR1 A;  4BD7 A;  1O0L A;  2BID A;  5FMI A;  3IIG A;  3DVU A;  2MEJ A;  1AF3 A;  4BD8 A;  4ZII A;  3D7V A;  5KU9 A;  4K5B C;  2BZW A;  2VOF A;  1YSI A;  1WSX A;  2VOH A;  3IHE A;  2KUA A;  2WH6 A;  1YSN A;  3I1H A;  2ROD A;  2ROC A;  1R2H A;  2K7W A;  3MK8 A;  3IHC A;  3MQP A;  2O22 A;  4OYD A;  5FC4 A;  3QBR A;  4S0O A;  1R2I A;  1R2D A;  3KJ0 A;  3KJ2 A;  1R2E A;  2IMT A;  3IO9 A;  4ZIE A;  2ABO A;  3WIY A;  4HW3 A;  4ZEQ A;  4QNQ A;  2XA0 A;  2VOI A;  3WIX A;  1OHU A;  4G35 A;  2VM6 A;  1ZY3 A;  2MHS A;  5KTG A;  2M5B A;  1R2G A;  4BPJ A;  3BL2 A;  4ZIF A;  1LXL A;  4ZIH A;  4S0P A;  3ILC A;  5FDR A;  5FDO A;  4B4S A;  1DDB A;  2IMS A;  4HW4 A;  4ZBF A;  4ZIG A;  4BD6 A;  3KZ0 A;  2O2N A;  5C3F A;  1MK3 A;  2A5Y A;  1PQ1 A;  1F16 A;  1GJH A;  4BPI A;  3PK1 A;  2ME8 A;  2XPX A;  2YV6 A;  2O21 A;  2PQK A;  2JCN A;  5IF4 A;  4U2U A;  4BDU A;  4OQ6 A;  4U2V A;  2W3L A;  4ZBI A;  4YK9 A;  4MI8 A;  1MAZ A;  4HW2 A;  3IIH A;  4QVX A;  2VOG A;  2JM6 B;  4WMR A;  1Q59 A;  2V6Q A;  1YSW A;  4BD2 A;  1G5M A;  4OQ5 A;  1BXL A;  1G5J A;  5JSB A;  5C6H A;  2NL9 A;  2O2M A;  1PQ0 A;  5IEZ A;  3IHD A;  1YSG A;  2O2F A;  1TY4 A; 
#chains in the Genus database with same CATH topology
 1K3K A;  4M0S A;  2B48 A;  3CVA X;  4YJ4 A;  2NLA A;  3KJ1 A;  2KBW A;  2LR1 A;  4BD7 A;  1O0L A;  2BID A;  5FMI A;  3IIG A;  3DVU A;  2MEJ A;  1AF3 A;  2VVW A;  4BD8 A;  4ZII A;  3D7V A;  5KU9 A;  4K5B C;  2BZW A;  2VOF A;  2O42 A;  1YSI A;  1WSX A;  4BBD A;  2VOH A;  3IHE A;  2KUA A;  2I39 A;  2WH6 A;  1YSN A;  3I1H A;  3JRV A;  2ROD A;  2VTY A;  2ROC A;  1R2H A;  2K7W A;  3MK8 A;  3IHC A;  4BBB A;  2VVY A;  3MQP A;  4UF3 A;  2O22 A;  4OYD A;  5FC4 A;  3QBR A;  4D2L A;  4S0O A;  1R2I A;  1R2D A;  3KJ0 A;  3KJ2 A;  1R2E A;  2IMT A;  3IO9 A;  4ZIE A;  2ABO A;  3WIY A;  4LQK A;  4HW3 A;  2JBX A;  4ZEQ A;  4QNQ A;  2XA0 A;  2VOI A;  3WIX A;  1OHU A;  4G35 A;  2VM6 A;  1ZY3 A;  2MHS A;  5KTG A;  2K36 A;  2M5B A;  1R2G A;  4BPJ A;  3BL2 A;  4ZIF A;  1LXL A;  4ZIH A;  4S0P A;  3ILC A;  5FDR A;  2JBY A;  5FDO A;  4B4S A;  1DDB A;  2IMS A;  4HW4 A;  4ZBF A;  4ZIG A;  4BD6 A;  3KZ0 A;  2O2N A;  5C3F A;  2VVX A;  1MK3 A;  2A5Y A;  1PQ1 A;  1F16 A;  1GJH A;  4BPI A;  3PK1 A;  2ME8 A;  2XPX A;  2YV6 A;  2O21 A;  2PQK A;  2JCN A;  5IF4 A;  4UF1 A;  4U2U A;  4BDU A;  4OQ6 A;  4U2V A;  2W3L A;  4ZBI A;  4YK9 A;  4MI8 A;  1MAZ A;  4HW2 A;  3IIH A;  4QVX A;  2VOG A;  2JM6 B;  4WMR A;  1Q59 A;  2V6Q A;  1YSW A;  4BD2 A;  2UXE A;  1G5M A;  4OQ5 A;  4UF2 A;  1BXL A;  1G5J A;  5JSB A;  4BBC A;  5C6H A;  2NL9 A;  2O2M A;  1PQ0 A;  5IEZ A;  3IHD A;  1YSG A;  2O2F A;  1TY4 A;  4D2M A; 
#chains in the Genus database with same CATH homology
 1K3K A;  2B48 A;  3CVA X;  4YJ4 A;  2NLA A;  3KJ1 A;  2KBW A;  2LR1 A;  4BD7 A;  1O0L A;  2BID A;  5FMI A;  3IIG A;  3DVU A;  2MEJ A;  1AF3 A;  4BD8 A;  4ZII A;  3D7V A;  5KU9 A;  4K5B C;  2BZW A;  2VOF A;  1YSI A;  1WSX A;  2VOH A;  3IHE A;  2KUA A;  2WH6 A;  1YSN A;  3I1H A;  2ROD A;  2ROC A;  1R2H A;  2K7W A;  3MK8 A;  3IHC A;  3MQP A;  2O22 A;  4OYD A;  5FC4 A;  3QBR A;  4S0O A;  1R2I A;  1R2D A;  3KJ0 A;  3KJ2 A;  1R2E A;  2IMT A;  3IO9 A;  4ZIE A;  2ABO A;  3WIY A;  4HW3 A;  4ZEQ A;  4QNQ A;  2XA0 A;  2VOI A;  3WIX A;  1OHU A;  4G35 A;  2VM6 A;  1ZY3 A;  2MHS A;  5KTG A;  2M5B A;  1R2G A;  4BPJ A;  3BL2 A;  4ZIF A;  1LXL A;  4ZIH A;  4S0P A;  3ILC A;  5FDR A;  5FDO A;  4B4S A;  1DDB A;  2IMS A;  4HW4 A;  4ZBF A;  4ZIG A;  4BD6 A;  3KZ0 A;  2O2N A;  5C3F A;  1MK3 A;  2A5Y A;  1PQ1 A;  1F16 A;  1GJH A;  4BPI A;  3PK1 A;  2ME8 A;  2XPX A;  2YV6 A;  2O21 A;  2PQK A;  2JCN A;  5IF4 A;  4U2U A;  4BDU A;  4OQ6 A;  4U2V A;  2W3L A;  4ZBI A;  4YK9 A;  4MI8 A;  1MAZ A;  4HW2 A;  3IIH A;  4QVX A;  2VOG A;  2JM6 B;  4WMR A;  1Q59 A;  2V6Q A;  1YSW A;  4BD2 A;  1G5M A;  4OQ5 A;  1BXL A;  1G5J A;  5JSB A;  5C6H A;  2NL9 A;  2O2M A;  1PQ0 A;  5IEZ A;  3IHD A;  1YSG A;  2O2F A;  1TY4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...