2IMZA

Crystal structure of mtu reca intein splicing domain
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
166
structure length
142
Chain Sequence
LAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAILWATPDHKVLTEYGWRAAGELRKGDRVAQPRRFDGFMLAEELRYSVIREVLPTRRARTFDLEVEELHTLVAEGVVVH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Endonuclease PI-MtuI
publication title Crystallographic and mutational studies of Mycobacterium tuberculosis recA mini-inteins suggest a pivotal role for a highly conserved aspartate residue.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 30
structure length 142
sequence length 166
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2006-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14890 Intein_splicing Intein splicing domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 2imzA00
2KEQA 2IN8A 1AT0A 1LWTA 4O1SA 1LWSA 2JNQA 3NZMA 2IMZA 1GPPA 2CW7A 3IGDA 2IN0A 1DQ3A 4O1RA 1MI8A 5I0AA 1VDEA 4GIGA 1EF0A 1UM2A 4KL5A 1ZD7A 4OZ6A 1ZDEA 2LWYA 2LCJA 2CW8A 3IFJA 4E2TA 4E2UA 2JMZA 5K08A 1AM2A 2LQMA 1JVAA 2IN9A 2L8LA 4KL6A 1DFAA
chains in the Genus database with same CATH superfamily
2KEQA 4LX3A 2IN8A 1AT0A 1LWTA 4O1SA 1LWSA 2JNQA 3NZMA 4QFQA 2IMZA 1GPPA 2CW7A 3IGDA 2IN0A 1DQ3A 4O1RA 1MI8A 5I0AA 1VDEA 4GIGA 1EF0A 1UM2A 4KL5A 1ZD7A 4OZ6A 1ZDEA 2LWYA 2LCJA 2CW8A 3IFJA 4E2TA 4E2UA 2JMZA 5K08A 1AM2A 2LQMA 1JVAA 2IN9A 2L8LA 4KL6A 1DFAA
chains in the Genus database with same CATH topology
2KEQA 2IN8A 1AT0A 1LWTA 4O1SA 1LWSA 2JNQA 3NZMA 2IMZA 1GPPA 2CW7A 3IGDA 2IN0A 1DQ3A 4O1RA 1MI8A 5I0AA 1VDEA 4GIGA 1EF0A 1UM2A 4KL5A 1ZD7A 4OZ6A 1ZDEA 2LWYA 2LCJA 2CW8A 3IFJA 4E2TA 4E2UA 2JMZA 5K08A 1AM2A 2LQMA 1JVAA 2IN9A 2L8LA 4KL6A 1DFAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KEQ A;  2IN8 A;  1AT0 A;  1LWT A;  4O1S A;  1LWS A;  2JNQ A;  3NZM A;  2IMZ A;  1GPP A;  2CW7 A;  3IGD A;  2IN0 A;  1DQ3 A;  4O1R A;  1MI8 A;  5I0A A;  1VDE A;  4GIG A;  1EF0 A;  1UM2 A;  4KL5 A;  1ZD7 A;  4OZ6 A;  1ZDE A;  2LWY A;  2LCJ A;  2CW8 A;  3IFJ A;  4E2T A;  4E2U A;  2JMZ A;  5K08 A;  1AM2 A;  2LQM A;  1JVA A;  2IN9 A;  2L8L A;  4KL6 A;  1DFA A; 
#chains in the Genus database with same CATH topology
 2KEQ A;  4LX3 A;  2IN8 A;  1AT0 A;  1LWT A;  4O1S A;  1LWS A;  2JNQ A;  3NZM A;  4QFQ A;  2IMZ A;  1GPP A;  2CW7 A;  3IGD A;  2IN0 A;  1DQ3 A;  4O1R A;  1MI8 A;  5I0A A;  1VDE A;  4GIG A;  1EF0 A;  1UM2 A;  4KL5 A;  1ZD7 A;  4OZ6 A;  1ZDE A;  2LWY A;  2LCJ A;  2CW8 A;  3IFJ A;  4E2T A;  4E2U A;  2JMZ A;  5K08 A;  1AM2 A;  2LQM A;  1JVA A;  2IN9 A;  2L8L A;  4KL6 A;  1DFA A; 
#chains in the Genus database with same CATH homology
 2KEQ A;  2IN8 A;  1AT0 A;  1LWT A;  4O1S A;  1LWS A;  2JNQ A;  3NZM A;  2IMZ A;  1GPP A;  2CW7 A;  3IGD A;  2IN0 A;  1DQ3 A;  4O1R A;  1MI8 A;  5I0A A;  1VDE A;  4GIG A;  1EF0 A;  1UM2 A;  4KL5 A;  1ZD7 A;  4OZ6 A;  1ZDE A;  2LWY A;  2LCJ A;  2CW8 A;  3IFJ A;  4E2T A;  4E2U A;  2JMZ A;  5K08 A;  1AM2 A;  2LQM A;  1JVA A;  2IN9 A;  2L8L A;  4KL6 A;  1DFA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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