2IO7A

E. coli bifunctional glutathionylspermidine synthetase/amidase incomplex with mg2+ and amppnp
Total Genus 160
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
606
structure length
587
Chain Sequence
APFGTLLGYAPGGVAIYSSDYRSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQIREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase, hydrolase
molecule keywords Bifunctional glutathionylspermidine synthetase/amidase
publication title Dual binding sites for translocation catalysis by Escherichia coli glutathionylspermidine synthetase
pubmed doi rcsb
source organism Escherichia coli
total genus 160
structure length 587
sequence length 606
chains with identical sequence B
ec nomenclature ec 3.5.1.78: Glutathionylspermidine amidase.
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03738 GSP_synth Glutathionylspermidine synthase preATP-grasp
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 2io7A01
2IO9A 4FGEA 4Q4NA 4FGDA 3GT2A 3NPFA 2XIVA 4Q4TA 4LJ1A 4F0VA 3NE0A 3KW0A 4R0KA 3A30A 2VOBA 3PBIA 4CSHA 4FDYA 2VPMA 4F4MA 3S0QA 3VPIA 4FQAA 4F0WA 4HZ9A 4CT3A 3H41A 2FG0A 4JXBA 2LRJA 2IO7A 4CGKA 2IO8A 3A2YA 3A2ZA 3M1UA 4HPEA 2IF6A 4FQBA 2K3AA 4HZBA 3PBCA 2VPSA 3VPJA 2EVRA 2IOBA 4OLKA 4FGIA 2IOAA 3I86A 2K1GA 4Q4GX 4EOBA 3O98A 3PVQA 2HBWA 4EQ8A 4EQAA
chains in the Genus database with same CATH superfamily
2IO9A 3EBQA 4FGEA 4Q4NA 4FGDA 4JURA 3GT2A 3NPFA 2XIVA 4Q4TA 4LJ1A 4F0VA 3NE0A 3KW0A 4R0KA 3A30A 2VOBA 3PBIA 4CSHA 4FDYA 2VPMA 4F4MA 3S0QA 3VPIA 4FQAA 4F0WA 4HFKA 4HFLA 4HZ9A 4J32A 4CT3A 3H41A 2FG0A 4JXBA 2LRJA 2WP7A 2IO7A 4CGKA 2IO8A 3A2YA 3A2ZA 3M1UA 4HPEA 2IF6A 4FQBA 2K3AA 4HZBA 3PBCA 2VPSA 3VPJA 2EVRA 2IOBA 4J30A 4OLKA 4FGIA 2IOAA 3I86A 2K1GA 4Q4GX 4EOBA 3O98A 3PVQA 2HBWA 4EQ8A 4HFFA 4EQAA
chains in the Genus database with same CATH topology
2IO9A 4FGEA 4Q4NA 4FGDA 3GT2A 3NPFA 2XIVA 4Q4TA 4LJ1A 4F0VA 3NE0A 3KW0A 4R0KA 3A30A 2VOBA 3PBIA 4CSHA 4FDYA 2VPMA 4F4MA 3S0QA 3VPIA 4FQAA 4F0WA 4HZ9A 4CT3A 3H41A 2FG0A 4JXBA 2LRJA 2IO7A 4CGKA 2IO8A 3A2YA 3A2ZA 3M1UA 4HPEA 2IF6A 4FQBA 2K3AA 4HZBA 3PBCA 2VPSA 3VPJA 2EVRA 2IOBA 4OLKA 4FGIA 2IOAA 3I86A 2K1GA 4Q4GX 4EOBA 3O98A 3PVQA 2HBWA 4EQ8A 4EQAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IO9 A;  4FGE A;  4Q4N A;  4FGD A;  3GT2 A;  3NPF A;  2XIV A;  4Q4T A;  4LJ1 A;  4F0V A;  3NE0 A;  3KW0 A;  4R0K A;  3A30 A;  2VOB A;  3PBI A;  4CSH A;  4FDY A;  2VPM A;  4F4M A;  3S0Q A;  3VPI A;  4FQA A;  4F0W A;  4HZ9 A;  4CT3 A;  3H41 A;  2FG0 A;  4JXB A;  2LRJ A;  2IO7 A;  4CGK A;  2IO8 A;  3A2Y A;  3A2Z A;  3M1U A;  4HPE A;  2IF6 A;  4FQB A;  2K3A A;  4HZB A;  3PBC A;  2VPS A;  3VPJ A;  2EVR A;  2IOB A;  4OLK A;  4FGI A;  2IOA A;  3I86 A;  2K1G A;  4Q4G X;  4EOB A;  3O98 A;  3PVQ A;  2HBW A;  4EQ8 A;  4EQA A; 
#chains in the Genus database with same CATH topology
 2IO9 A;  3EBQ A;  4FGE A;  4Q4N A;  4FGD A;  4JUR A;  3GT2 A;  3NPF A;  2XIV A;  4Q4T A;  4LJ1 A;  4F0V A;  3NE0 A;  3KW0 A;  4R0K A;  3A30 A;  2VOB A;  3PBI A;  4CSH A;  4FDY A;  2VPM A;  4F4M A;  3S0Q A;  3VPI A;  4FQA A;  4F0W A;  4HFK A;  4HFL A;  4HZ9 A;  4J32 A;  4CT3 A;  3H41 A;  2FG0 A;  4JXB A;  2LRJ A;  2WP7 A;  2IO7 A;  4CGK A;  2IO8 A;  3A2Y A;  3A2Z A;  3M1U A;  4HPE A;  2IF6 A;  4FQB A;  2K3A A;  4HZB A;  3PBC A;  2VPS A;  3VPJ A;  2EVR A;  2IOB A;  4J30 A;  4OLK A;  4FGI A;  2IOA A;  3I86 A;  2K1G A;  4Q4G X;  4EOB A;  3O98 A;  3PVQ A;  2HBW A;  4EQ8 A;  4HFF A;  4EQA A; 
#chains in the Genus database with same CATH homology
 2IO9 A;  4FGE A;  4Q4N A;  4FGD A;  3GT2 A;  3NPF A;  2XIV A;  4Q4T A;  4LJ1 A;  4F0V A;  3NE0 A;  3KW0 A;  4R0K A;  3A30 A;  2VOB A;  3PBI A;  4CSH A;  4FDY A;  2VPM A;  4F4M A;  3S0Q A;  3VPI A;  4FQA A;  4F0W A;  4HZ9 A;  4CT3 A;  3H41 A;  2FG0 A;  4JXB A;  2LRJ A;  2IO7 A;  4CGK A;  2IO8 A;  3A2Y A;  3A2Z A;  3M1U A;  4HPE A;  2IF6 A;  4FQB A;  2K3A A;  4HZB A;  3PBC A;  2VPS A;  3VPJ A;  2EVR A;  2IOB A;  4OLK A;  4FGI A;  2IOA A;  3I86 A;  2K1G A;  4Q4G X;  4EOB A;  3O98 A;  3PVQ A;  2HBW A;  4EQ8 A;  4EQA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...