2IOBA

E. coli bifunctional glutathionylspermidine synthetase/amidase apo protein
Total Genus 163
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
607
structure length
571
Chain Sequence
FGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVFRSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVNYAVKPKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase, hydrolase
molecule keywords Bifunctional glutathionylspermidine synthetase/amidase
publication title Dual binding sites for translocation catalysis by Escherichia coli glutathionylspermidine synthetase
pubmed doi rcsb
source organism Escherichia coli
total genus 163
structure length 571
sequence length 607
chains with identical sequence B
ec nomenclature ec 3.5.1.78: Glutathionylspermidine amidase.
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03738 GSP_synth Glutathionylspermidine synthase preATP-grasp
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 2iobA01
4EOBA 4FQBA 4Q4TA 3H41A 2VPMA 3I86A 3S0QA 3O98A 4CGKA 3NE0A 4FDYA 3PVQA 4FGIA 4HZBA 4HZ9A 2LRJA 2HBWA 4EQAA 3KW0A 2K1GA 4CSHA 3PBIA 2FG0A 4R0KA 2IO8A 3VPJA 2IO7A 4OLKA 4FGDA 2VPSA 4Q4GX 3GT2A 3A30A 4CT3A 2K3AA 2IOBA 2IF6A 4F4MA 4Q4NA 3PBCA 2IOAA 4F0VA 2IO9A 2VOBA 3A2YA 4LJ1A 4FGEA 3M1UA 4HPEA 3NPFA 3A2ZA 4EQ8A 4JXBA 4F0WA 2EVRA 2XIVA 3VPIA 4FQAA
chains in the Genus database with same CATH superfamily
4HFFA 4HFLA 4EOBA 4FQBA 4Q4TA 3H41A 2VPMA 3I86A 4HFKA 3O98A 3S0QA 4CGKA 3NE0A 4FDYA 3PVQA 4FGIA 4HZBA 4HZ9A 2LRJA 2HBWA 2WP7A 4J30A 4EQAA 3KW0A 2K1GA 4CSHA 3PBIA 2FG0A 4R0KA 4J32A 2IO8A 3VPJA 2IO7A 4OLKA 4FGDA 4JURA 2VPSA 4Q4GX 3A30A 3GT2A 4CT3A 2K3AA 2IOBA 2IF6A 4F4MA 4Q4NA 3PBCA 2IOAA 4F0VA 2IO9A 2VOBA 3A2YA 3EBQA 4LJ1A 4FGEA 3M1UA 4HPEA 3NPFA 3A2ZA 4EQ8A 4JXBA 4F0WA 2EVRA 2XIVA 3VPIA 4FQAA
chains in the Genus database with same CATH topology
4EOBA 4FQBA 4Q4TA 3H41A 2VPMA 3I86A 3S0QA 3O98A 4CGKA 3NE0A 4FDYA 3PVQA 4FGIA 4HZBA 4HZ9A 2LRJA 2HBWA 4EQAA 3KW0A 2K1GA 4CSHA 3PBIA 2FG0A 4R0KA 2IO8A 3VPJA 2IO7A 4OLKA 4FGDA 2VPSA 4Q4GX 3GT2A 3A30A 4CT3A 2K3AA 2IOBA 2IF6A 4F4MA 4Q4NA 3PBCA 2IOAA 4F0VA 2IO9A 2VOBA 3A2YA 4LJ1A 4FGEA 3M1UA 4HPEA 3NPFA 3A2ZA 4EQ8A 4JXBA 4F0WA 2EVRA 2XIVA 3VPIA 4FQAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EOB A;  4FQB A;  4Q4T A;  3H41 A;  2VPM A;  3I86 A;  3S0Q A;  3O98 A;  4CGK A;  3NE0 A;  4FDY A;  3PVQ A;  4FGI A;  4HZB A;  4HZ9 A;  2LRJ A;  2HBW A;  4EQA A;  3KW0 A;  2K1G A;  4CSH A;  3PBI A;  2FG0 A;  4R0K A;  2IO8 A;  3VPJ A;  2IO7 A;  4OLK A;  4FGD A;  2VPS A;  4Q4G X;  3GT2 A;  3A30 A;  4CT3 A;  2K3A A;  2IOB A;  2IF6 A;  4F4M A;  4Q4N A;  3PBC A;  2IOA A;  4F0V A;  2IO9 A;  2VOB A;  3A2Y A;  4LJ1 A;  4FGE A;  3M1U A;  4HPE A;  3NPF A;  3A2Z A;  4EQ8 A;  4JXB A;  4F0W A;  2EVR A;  2XIV A;  3VPI A;  4FQA A; 
#chains in the Genus database with same CATH topology
 4HFF A;  4HFL A;  4EOB A;  4FQB A;  4Q4T A;  3H41 A;  2VPM A;  3I86 A;  4HFK A;  3O98 A;  3S0Q A;  4CGK A;  3NE0 A;  4FDY A;  3PVQ A;  4FGI A;  4HZB A;  4HZ9 A;  2LRJ A;  2HBW A;  2WP7 A;  4J30 A;  4EQA A;  3KW0 A;  2K1G A;  4CSH A;  3PBI A;  2FG0 A;  4R0K A;  4J32 A;  2IO8 A;  3VPJ A;  2IO7 A;  4OLK A;  4FGD A;  4JUR A;  2VPS A;  4Q4G X;  3A30 A;  3GT2 A;  4CT3 A;  2K3A A;  2IOB A;  2IF6 A;  4F4M A;  4Q4N A;  3PBC A;  2IOA A;  4F0V A;  2IO9 A;  2VOB A;  3A2Y A;  3EBQ A;  4LJ1 A;  4FGE A;  3M1U A;  4HPE A;  3NPF A;  3A2Z A;  4EQ8 A;  4JXB A;  4F0W A;  2EVR A;  2XIV A;  3VPI A;  4FQA A; 
#chains in the Genus database with same CATH homology
 4EOB A;  4FQB A;  4Q4T A;  3H41 A;  2VPM A;  3I86 A;  3S0Q A;  3O98 A;  4CGK A;  3NE0 A;  4FDY A;  3PVQ A;  4FGI A;  4HZB A;  4HZ9 A;  2LRJ A;  2HBW A;  4EQA A;  3KW0 A;  2K1G A;  4CSH A;  3PBI A;  2FG0 A;  4R0K A;  2IO8 A;  3VPJ A;  2IO7 A;  4OLK A;  4FGD A;  2VPS A;  4Q4G X;  3GT2 A;  3A30 A;  4CT3 A;  2K3A A;  2IOB A;  2IF6 A;  4F4M A;  4Q4N A;  3PBC A;  2IOA A;  4F0V A;  2IO9 A;  2VOB A;  3A2Y A;  4LJ1 A;  4FGE A;  3M1U A;  4HPE A;  3NPF A;  3A2Z A;  4EQ8 A;  4JXB A;  4F0W A;  2EVR A;  2XIV A;  3VPI A;  4FQA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...