2IOBA

E. coli bifunctional glutathionylspermidine synthetase/amidase apo protein
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
607
structure length
571
Chain Sequence
FGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVFRSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADSASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQIREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVNYAVKPKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Dual binding sites for translocation catalysis by Escherichia coli glutathionylspermidine synthetase
pubmed doi rcsb
molecule tags Ligase, hydrolase
source organism Escherichia coli
molecule keywords Bifunctional glutathionylspermidine synthetase/amidase
total genus 163
structure length 571
sequence length 607
chains with identical sequence B
ec nomenclature ec 3.5.1.78: Glutathionylspermidine amidase.
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03738 GSP_synth Glutathionylspermidine synthase preATP-grasp
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 2iobA01
3NE0A 2VPSA 2FG0A 2IF6A 3PVQA 4EQAA 4HPEA 4F0VA 3NPFA 4R0KA 3H41A 4FQBA 4LJ1A 3A2YA 2IO9A 4FGEA 4CT3A 4EQ8A 4FGIA 2IOAA 2K1GA 2IO7A 2VPMA 2VOBA 4CGKA 3A30A 4F4MA 2HBWA 3GT2A 4HZBA 4FGDA 2XIVA 4OLKA 4F0WA 3M1UA 4FQAA 2IO8A 3KW0A 4EOBA 4JXBA 2LRJA 4Q4GX 2K3AA 4FDYA 3I86A 4CSHA 3A2ZA 3PBCA 4HZ9A 3S0QA 4Q4TA 3O98A 3VPIA 3PBIA 2EVRA 3VPJA 4Q4NA 2IOBA
chains in the Genus database with same CATH superfamily
3NE0A 2VPSA 2FG0A 2IF6A 3PVQA 4EQAA 4HPEA 4F0VA 3NPFA 4R0KA 3H41A 4FQBA 4HFKA 3A2YA 2IO9A 4FGEA 4LJ1A 4CT3A 4EQ8A 4FGIA 2IOAA 2K1GA 2IO7A 2VPMA 4J32A 2VOBA 4CGKA 3A30A 4F4MA 2HBWA 3GT2A 4HZBA 4FGDA 2XIVA 3EBQA 4OLKA 3M1UA 4FQAA 4HFLA 3KW0A 2IO8A 4EOBA 4JXBA 4F0WA 2LRJA 4Q4GX 2K3AA 2WP7A 4FDYA 4J30A 3I86A 4CSHA 3A2ZA 3PBCA 4HZ9A 4JURA 3S0QA 4HFFA 4Q4TA 3O98A 3VPIA 3PBIA 2EVRA 3VPJA 4Q4NA 2IOBA
chains in the Genus database with same CATH topology
3NE0A 2VPSA 2FG0A 2IF6A 3PVQA 4EQAA 4HPEA 4F0VA 3NPFA 4R0KA 3H41A 4FQBA 4LJ1A 3A2YA 2IO9A 4FGEA 4CT3A 4EQ8A 4FGIA 2IOAA 2K1GA 2IO7A 2VPMA 2VOBA 4CGKA 3A30A 4F4MA 2HBWA 3GT2A 4HZBA 4FGDA 2XIVA 4OLKA 4F0WA 3M1UA 4FQAA 2IO8A 3KW0A 4EOBA 4JXBA 2LRJA 4Q4GX 2K3AA 4FDYA 3I86A 4CSHA 3A2ZA 3PBCA 4HZ9A 3S0QA 4Q4TA 3O98A 3VPIA 3PBIA 2EVRA 3VPJA 4Q4NA 2IOBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NE0 A;  2VPS A;  2FG0 A;  2IF6 A;  3PVQ A;  4EQA A;  4HPE A;  4F0V A;  3NPF A;  4R0K A;  3H41 A;  4FQB A;  4LJ1 A;  3A2Y A;  2IO9 A;  4FGE A;  4CT3 A;  4EQ8 A;  4FGI A;  2IOA A;  2K1G A;  2IO7 A;  2VPM A;  2VOB A;  4CGK A;  3A30 A;  4F4M A;  2HBW A;  3GT2 A;  4HZB A;  4FGD A;  2XIV A;  4OLK A;  4F0W A;  3M1U A;  4FQA A;  2IO8 A;  3KW0 A;  4EOB A;  4JXB A;  2LRJ A;  4Q4G X;  2K3A A;  4FDY A;  3I86 A;  4CSH A;  3A2Z A;  3PBC A;  4HZ9 A;  3S0Q A;  4Q4T A;  3O98 A;  3VPI A;  3PBI A;  2EVR A;  3VPJ A;  4Q4N A;  2IOB A; 
#chains in the Genus database with same CATH topology
 3NE0 A;  2VPS A;  2FG0 A;  2IF6 A;  3PVQ A;  4EQA A;  4HPE A;  4F0V A;  3NPF A;  4R0K A;  3H41 A;  4FQB A;  4HFK A;  3A2Y A;  2IO9 A;  4FGE A;  4LJ1 A;  4CT3 A;  4EQ8 A;  4FGI A;  2IOA A;  2K1G A;  2IO7 A;  2VPM A;  4J32 A;  2VOB A;  4CGK A;  3A30 A;  4F4M A;  2HBW A;  3GT2 A;  4HZB A;  4FGD A;  2XIV A;  3EBQ A;  4OLK A;  3M1U A;  4FQA A;  4HFL A;  3KW0 A;  2IO8 A;  4EOB A;  4JXB A;  4F0W A;  2LRJ A;  4Q4G X;  2K3A A;  2WP7 A;  4FDY A;  4J30 A;  3I86 A;  4CSH A;  3A2Z A;  3PBC A;  4HZ9 A;  4JUR A;  3S0Q A;  4HFF A;  4Q4T A;  3O98 A;  3VPI A;  3PBI A;  2EVR A;  3VPJ A;  4Q4N A;  2IOB A; 
#chains in the Genus database with same CATH homology
 3NE0 A;  2VPS A;  2FG0 A;  2IF6 A;  3PVQ A;  4EQA A;  4HPE A;  4F0V A;  3NPF A;  4R0K A;  3H41 A;  4FQB A;  4LJ1 A;  3A2Y A;  2IO9 A;  4FGE A;  4CT3 A;  4EQ8 A;  4FGI A;  2IOA A;  2K1G A;  2IO7 A;  2VPM A;  2VOB A;  4CGK A;  3A30 A;  4F4M A;  2HBW A;  3GT2 A;  4HZB A;  4FGD A;  2XIV A;  4OLK A;  4F0W A;  3M1U A;  4FQA A;  2IO8 A;  3KW0 A;  4EOB A;  4JXB A;  2LRJ A;  4Q4G X;  2K3A A;  4FDY A;  3I86 A;  4CSH A;  3A2Z A;  3PBC A;  4HZ9 A;  3S0Q A;  4Q4T A;  3O98 A;  3VPI A;  3PBI A;  2EVR A;  3VPJ A;  4Q4N A;  2IOB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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