2IOJA

Crystal structure of protein af1212 from archaeoglobus fulgidus, pfam drtgg
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
120
structure length
120
Chain Sequence
GLSVEEIREAVSGEYLIEPREEKMVEQVVIGAMSPQSALRYLREARNAALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGHDTLTAVSRLESVFGRTRIRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Hypothetical protein AF_1212
publication title The crystal structure of a hypothetical protein (Y1212_ARCFU) from Archeoglobus fulgidus
rcsb
source organism Archaeoglobus fulgidus
molecule tags Structural genomics, unknown function
total genus 39
structure length 120
sequence length 120
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07085 DRTGG DRTGG domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1390.20 Alpha Beta 3-Layer(aba) Sandwich Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 HprK N-terminal domain-like 2iojA00
3L31A 1KNXA 3L2BA 1KO7A 2IOJA
chains in the Genus database with same CATH superfamily
2WTZA 4IHHA 4IHFA 4E75A 3WSHA 3WSGA 4CVLA 2IU9A 2IUAA 4BUBA 1GG4A 2XJAA 3WSFA 4IWMA 3L31A 3WSEA 4QDIA 2YYBA 1NMPA 2IOJA 1NMOA 3PMOA 2IU8A 3WSIA 2AM1A 4ZIYA 3ZL8A 2AM2A 1KNXA 3WSDA 4E79A 3EEQA 3ZM5A 3L2BA 4C12A 4IWGA 3ZM6A 2FYWA 4CVMA 1E8CA 4IHGA 4C13A 3EH0A 4QF5A 4CVKA 1KO7A
chains in the Genus database with same CATH topology
3L31A 1KNXA 3L2BA 1KO7A 2IOJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L31 A;  1KNX A;  3L2B A;  1KO7 A;  2IOJ A; 
#chains in the Genus database with same CATH topology
 2WTZ A;  4IHH A;  4IHF A;  4E75 A;  3WSH A;  3WSG A;  4CVL A;  2IU9 A;  2IUA A;  4BUB A;  1GG4 A;  2XJA A;  3WSF A;  4IWM A;  3L31 A;  3WSE A;  4QDI A;  2YYB A;  1NMP A;  2IOJ A;  1NMO A;  3PMO A;  2IU8 A;  3WSI A;  2AM1 A;  4ZIY A;  3ZL8 A;  2AM2 A;  1KNX A;  3WSD A;  4E79 A;  3EEQ A;  3ZM5 A;  3L2B A;  4C12 A;  4IWG A;  3ZM6 A;  2FYW A;  4CVM A;  1E8C A;  4IHG A;  4C13 A;  3EH0 A;  4QF5 A;  4CVK A;  1KO7 A; 
#chains in the Genus database with same CATH homology
 3L31 A;  1KNX A;  3L2B A;  1KO7 A;  2IOJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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