2IOUA

Major tropism determinant p1 (mtd-p1) variant complexed with bordetella brochiseptica virulence factor pertactin extracellular domain (prn-e).
Total Genus 94
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
376
structure length
376
Chain Sequence
VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDIKFRPAALDPRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGAWNGTSLSGSRAALWYSGPSFSFAFFGARGVCDHLIL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Major Tropism Determinant P1
publication title Selective Ligand Recognition by a Diversity-Generating Retroelement Variable Protein
pubmed doi rcsb
source organism Bordetella phage bpp-1
molecule tags Viral protein/membrane protein
total genus 94
structure length 376
sequence length 376
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18454 Mtd_N Major tropism determinant N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.30 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 2iouA01
3.90.1580.10 Alpha Beta Alpha-Beta Complex paralog of FGE (formylglycine-generating enzyme) paralog of FGE (formylglycine-generating enzyme) 2iouA03
1Y1JX 1Y1HX 2Q17A 1YU4A 2AIKX 1Y1EX 1Y1GX 1YU1A 1Z70X 2HIBX 2AIIX 2IOUA 2HI8X 2AFYX 1YU3A 2Y3CA 2AIJX 1YU2A 1YU0A 1Y4JA 1Y1FX 2AFTX 1Y1IX
chains in the Genus database with same CATH superfamily
2Y2QA 4IBKA 1Y1EX 1E8BA 1EAKA 4TX8A 1UR8A 3WD4A 4IBCA 3L26A 3MQLA 3WD0A 2BG1A 1YUEA 2UWXA 2Y2NA 4QNLA 4HMDA 2Y3CA 4Z2IA 3WD3A 4GHLA 4IBGA 2RTSA 4NY2A 4NYYA 5BPVA 3KS8A 2IOUA 1Y1IX 2FN2A 3WD2A 4IBIA 3L29A 1W1VA 2Y2MA 1ED7A 2Y2IA 3L25A 1Y1GX 1YU1A 1QO6A 2Y2LA 4OJ5A 1Z70X 2JE5A 3WX7A 4NZ5A 2AFYX 4OUIA 1YU0A 4LG2A 4IBDA 4GH9A 3L27A 1CK7A 1GOIA 4NZ1A 4MB5A 3N3FA 1Y1FX 4GHAA 2AFTX 1Y1JX 3L28A 3WD1A 4IBFA 2Y2PA 4MB3A 1H0IA 4Z2HA 1E88A 1E6RA 2Y2KA 4MB4A 1W1PA 4HMCA 1OGGA 4NZ3A 4NYUA 1J7MA 2HI8X 3HONA 4OJOA 1PDCA 2JCHA 1GPFA 1H0GA 1E6ZA 4Z2LA 2Y2OA 1W1TA 4Z2KA 1OGBA 1UR9A 2Y2JA 4Z2GA 4Z2JA 1E6NA 1GXDA 4OJ6A 1Y1HX 2V5OA 4IBBA 2D49A 2Q17A 1YU4A 2AIKX 1E6PA 1CXWA 4IJFA 4NZ4A 3M7PA 1L6JA 4HMEA 2FFFB 1W1YA 2HIBX 2AIIX 1AIWA 2XD5A 2Y2HA 4OJPA 1YU3A 2XD1A 4IBJA 4IJEA 1KS0A 2AIJX 1H8PA 1YU2A 3FKEA 2Y2GA 1E15A 4OJLA 3L2AA 1Y4JA 3HSHA 4IBEA 3KS4A 1O6IA
chains in the Genus database with same CATH topology
2Y2QA 4IBKA 1Y1EX 4IBCA 3L26A 2BG1A 1YUEA 2UWXA 2Y2NA 4QNLA 2Y3CA 4GHLA 4IBGA 4NY2A 4NYYA 5BPVA 3KS8A 1Y1IX 2IOUA 4IBIA 3L29A 2Y2MA 2Y2IA 3L25A 1Y1GX 1YU1A 2Y2LA 4OJ5A 1Z70X 2JE5A 3WX7A 4NZ5A 2AFYX 4OUIA 1YU0A 4LG2A 4IBDA 4GH9A 3L27A 4NZ1A 3N3FA 1Y1FX 4GHAA 2AFTX 1Y1JX 3L28A 4IBFA 2Y2PA 2Y2KA 4NZ3A 4NYUA 2HI8X 3HONA 4OJOA 2JCHA 2Y2OA 2Y2JA 4OJ6A 1Y1HX 4IBBA 2Q17A 1YU4A 2AIKX 4IJFA 4NZ4A 2FFFB 2HIBX 2AIIX 2XD5A 2Y2HA 4OJPA 1YU3A 2XD1A 4IBJA 4IJEA 2AIJX 1YU2A 3FKEA 2Y2GA 4OJLA 3L2AA 1Y4JA 3HSHA 4IBEA 3KS4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1J X;  1Y1H X;  2Q17 A;  1YU4 A;  2AIK X;  1Y1E X;  1Y1G X;  1YU1 A;  1Z70 X;  2HIB X;  2AII X;  2IOU A;  2HI8 X;  2AFY X;  1YU3 A;  2Y3C A;  2AIJ X;  1YU2 A;  1YU0 A;  1Y4J A;  1Y1F X;  2AFT X;  1Y1I X; 
#chains in the Genus database with same CATH topology
 2Y2Q A;  4IBK A;  1Y1E X;  1E8B A;  1EAK A;  4TX8 A;  1UR8 A;  3WD4 A;  4IBC A;  3L26 A;  3MQL A;  3WD0 A;  2BG1 A;  1YUE A;  2UWX A;  2Y2N A;  4QNL A;  4HMD A;  2Y3C A;  4Z2I A;  3WD3 A;  4GHL A;  4IBG A;  2RTS A;  4NY2 A;  4NYY A;  5BPV A;  3KS8 A;  2IOU A;  1Y1I X;  2FN2 A;  3WD2 A;  4IBI A;  3L29 A;  1W1V A;  2Y2M A;  1ED7 A;  2Y2I A;  3L25 A;  1Y1G X;  1YU1 A;  1QO6 A;  2Y2L A;  4OJ5 A;  1Z70 X;  2JE5 A;  3WX7 A;  4NZ5 A;  2AFY X;  4OUI A;  1YU0 A;  4LG2 A;  4IBD A;  4GH9 A;  3L27 A;  1CK7 A;  1GOI A;  4NZ1 A;  4MB5 A;  3N3F A;  1Y1F X;  4GHA A;  2AFT X;  1Y1J X;  3L28 A;  3WD1 A;  4IBF A;  2Y2P A;  4MB3 A;  1H0I A;  4Z2H A;  1E88 A;  1E6R A;  2Y2K A;  4MB4 A;  1W1P A;  4HMC A;  1OGG A;  4NZ3 A;  4NYU A;  1J7M A;  2HI8 X;  3HON A;  4OJO A;  1PDC A;  2JCH A;  1GPF A;  1H0G A;  1E6Z A;  4Z2L A;  2Y2O A;  1W1T A;  4Z2K A;  1OGB A;  1UR9 A;  2Y2J A;  4Z2G A;  4Z2J A;  1E6N A;  1GXD A;  4OJ6 A;  1Y1H X;  2V5O A;  4IBB A;  2D49 A;  2Q17 A;  1YU4 A;  2AIK X;  1E6P A;  1CXW A;  4IJF A;  4NZ4 A;  3M7P A;  1L6J A;  4HME A;  2FFF B;  1W1Y A;  2HIB X;  2AII X;  1AIW A;  2XD5 A;  2Y2H A;  4OJP A;  1YU3 A;  2XD1 A;  4IBJ A;  4IJE A;  1KS0 A;  2AIJ X;  1H8P A;  1YU2 A;  3FKE A;  2Y2G A;  1E15 A;  4OJL A;  3L2A A;  1Y4J A;  3HSH A;  4IBE A;  3KS4 A;  1O6I A; 
#chains in the Genus database with same CATH homology
 2Y2Q A;  4IBK A;  1Y1E X;  4IBC A;  3L26 A;  2BG1 A;  1YUE A;  2UWX A;  2Y2N A;  4QNL A;  2Y3C A;  4GHL A;  4IBG A;  4NY2 A;  4NYY A;  5BPV A;  3KS8 A;  1Y1I X;  2IOU A;  4IBI A;  3L29 A;  2Y2M A;  2Y2I A;  3L25 A;  1Y1G X;  1YU1 A;  2Y2L A;  4OJ5 A;  1Z70 X;  2JE5 A;  3WX7 A;  4NZ5 A;  2AFY X;  4OUI A;  1YU0 A;  4LG2 A;  4IBD A;  4GH9 A;  3L27 A;  4NZ1 A;  3N3F A;  1Y1F X;  4GHA A;  2AFT X;  1Y1J X;  3L28 A;  4IBF A;  2Y2P A;  2Y2K A;  4NZ3 A;  4NYU A;  2HI8 X;  3HON A;  4OJO A;  2JCH A;  2Y2O A;  2Y2J A;  4OJ6 A;  1Y1H X;  4IBB A;  2Q17 A;  1YU4 A;  2AIK X;  4IJF A;  4NZ4 A;  2FFF B;  2HIB X;  2AII X;  2XD5 A;  2Y2H A;  4OJP A;  1YU3 A;  2XD1 A;  4IBJ A;  4IJE A;  2AIJ X;  1YU2 A;  3FKE A;  2Y2G A;  4OJL A;  3L2A A;  1Y4J A;  3HSH A;  4IBE A;  3KS4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...