2IOUA

Major tropism determinant p1 (mtd-p1) variant complexed with bordetella brochiseptica virulence factor pertactin extracellular domain (prn-e).
Total Genus 94
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
376
structure length
376
Chain Sequence
VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGATAGGFPLARHDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYAPGSNAAAQAGGNTTAQINEYSLWDIKFRPAALDPRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGAWNGTSLSGSRAALWYSGPSFSFAFFGARGVCDHLIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Major Tropism Determinant P1
publication title Selective Ligand Recognition by a Diversity-Generating Retroelement Variable Protein
pubmed doi rcsb
source organism Bordetella phage bpp-1
molecule tags Viral protein/membrane protein
total genus 94
structure length 376
sequence length 376
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18454 Mtd_N Major tropism determinant N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.30 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Seminal Fluid Protein PDC-109 (Domain B) 2iouA01
3.90.1580.10 Alpha Beta Alpha-Beta Complex paralog of FGE (formylglycine-generating enzyme) paralog of FGE (formylglycine-generating enzyme) 2iouA03
2AIKX 2Y3CA 1Y1FX 2AFYX 2IOUA 1Y1GX 1YU2A 2AIIX 1Y4JA 1Z70X 2Q17A 2AFTX 1Y1EX 2HI8X 1Y1HX 1YU3A 2AIJX 2HIBX 1YU4A 1Y1IX 1YU1A 1YU0A 1Y1JX
chains in the Genus database with same CATH superfamily
3N3FA 4IBFA 4IBIA 1ED7A 1Y1FX 1YU2A 1H0GA 1J7MA 1E6PA 2Q17A 1OGGA 1UR9A 4NY2A 4Z2LA 3M7PA 1EAKA 1W1VA 4MB3A 2HI8X 1PDCA 3L26A 2AIJX 2Y2JA 3WX7A 3KS8A 4GHLA 1W1PA 2HIBX 3FKEA 4Z2KA 1Y1IX 1YU1A 1YU0A 1UR8A 4Z2GA 4Z2HA 1W1TA 1W1YA 1YUEA 1GPFA 2IOUA 4IBGA 3WD4A 2XD1A 4NZ1A 1KS0A 2AIIX 4NZ3A 2AFTX 4IBDA 3L25A 4HMDA 1E88A 1H0IA 4GH9A 2JCHA 1QO6A 4OJLA 5BPVA 1OGBA 4Z2JA 4OUIA 4GHAA 1Y1JX 3WD0A 4OJ6A 4IBCA 2Y3CA 1E15A 4IBEA 3WD2A 2BG1A 1Y1GX 4IJEA 2V5OA 1Y4JA 4TX8A 2Y2LA 1E8BA 4Z2IA 2D49A 1Y1EX 1E6RA 4NYYA 4OJPA 1AIWA 1YU3A 2Y2GA 1Y1HX 4HMEA 4IBBA 2Y2MA 2JE5A 2Y2QA 1YU4A 2Y2NA 2RTSA 1CXWA 3L27A 1GOIA 1O6IA 2Y2PA 3HSHA 4OJOA 2AIKX 3WD1A 1L6JA 3WD3A 3KS4A 4NZ5A 1E6NA 4NYUA 3L29A 4MB4A 2AFYX 4IBKA 4OJ5A 4HMCA 1CK7A 2UWXA 4IJFA 2Y2KA 2FFFB 1Z70X 3L2AA 1E6ZA 4QNLA 4MB5A 1GXDA 4NZ4A 3HONA 2FN2A 2XD5A 2Y2HA 3MQLA 4LG2A 3L28A 2Y2IA 2Y2OA 1H8PA 4IBJA
chains in the Genus database with same CATH topology
3N3FA 4IBFA 4IBIA 1Y1FX 1YU2A 2Q17A 4NY2A 2HI8X 3L26A 2AIJX 2Y2JA 3WX7A 3KS8A 4GHLA 2HIBX 3FKEA 1Y1IX 1YU1A 1YU0A 1YUEA 2IOUA 4IBGA 2XD1A 4NZ1A 2AIIX 4NZ3A 2AFTX 4IBDA 3L25A 4GH9A 2JCHA 4OJLA 5BPVA 4GHAA 4OUIA 1Y1JX 4OJ6A 4IBCA 2Y3CA 4IBEA 2BG1A 1Y1GX 4IJEA 1Y4JA 2Y2LA 1Y1EX 4NYYA 4OJPA 2Y2GA 1YU3A 1Y1HX 4IBBA 2Y2MA 2JE5A 2Y2QA 1YU4A 2Y2NA 3L27A 2Y2PA 3HSHA 4OJOA 2AIKX 3KS4A 4NZ5A 4NYUA 3L29A 2AFYX 4IBKA 4OJ5A 4IJFA 2UWXA 2Y2KA 2FFFB 1Z70X 3L2AA 4QNLA 4NZ4A 3HONA 2XD5A 2Y2HA 4LG2A 3L28A 2Y2IA 2Y2OA 4IBJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AIK X;  2Y3C A;  1Y1F X;  2AFY X;  2IOU A;  1Y1G X;  1YU2 A;  2AII X;  1Y4J A;  1Z70 X;  2Q17 A;  2AFT X;  1Y1E X;  2HI8 X;  1Y1H X;  1YU3 A;  2AIJ X;  2HIB X;  1YU4 A;  1Y1I X;  1YU1 A;  1YU0 A;  1Y1J X; 
#chains in the Genus database with same CATH topology
 3N3F A;  4IBF A;  4IBI A;  1ED7 A;  1Y1F X;  1YU2 A;  1H0G A;  1J7M A;  1E6P A;  2Q17 A;  1OGG A;  1UR9 A;  4NY2 A;  4Z2L A;  3M7P A;  1EAK A;  1W1V A;  4MB3 A;  2HI8 X;  1PDC A;  3L26 A;  2AIJ X;  2Y2J A;  3WX7 A;  3KS8 A;  4GHL A;  1W1P A;  2HIB X;  3FKE A;  4Z2K A;  1Y1I X;  1YU1 A;  1YU0 A;  1UR8 A;  4Z2G A;  4Z2H A;  1W1T A;  1W1Y A;  1YUE A;  1GPF A;  2IOU A;  4IBG A;  3WD4 A;  2XD1 A;  4NZ1 A;  1KS0 A;  2AII X;  4NZ3 A;  2AFT X;  4IBD A;  3L25 A;  4HMD A;  1E88 A;  1H0I A;  4GH9 A;  2JCH A;  1QO6 A;  4OJL A;  5BPV A;  1OGB A;  4Z2J A;  4OUI A;  4GHA A;  1Y1J X;  3WD0 A;  4OJ6 A;  4IBC A;  2Y3C A;  1E15 A;  4IBE A;  3WD2 A;  2BG1 A;  1Y1G X;  4IJE A;  2V5O A;  1Y4J A;  4TX8 A;  2Y2L A;  1E8B A;  4Z2I A;  2D49 A;  1Y1E X;  1E6R A;  4NYY A;  4OJP A;  1AIW A;  1YU3 A;  2Y2G A;  1Y1H X;  4HME A;  4IBB A;  2Y2M A;  2JE5 A;  2Y2Q A;  1YU4 A;  2Y2N A;  2RTS A;  1CXW A;  3L27 A;  1GOI A;  1O6I A;  2Y2P A;  3HSH A;  4OJO A;  2AIK X;  3WD1 A;  1L6J A;  3WD3 A;  3KS4 A;  4NZ5 A;  1E6N A;  4NYU A;  3L29 A;  4MB4 A;  2AFY X;  4IBK A;  4OJ5 A;  4HMC A;  1CK7 A;  2UWX A;  4IJF A;  2Y2K A;  2FFF B;  1Z70 X;  3L2A A;  1E6Z A;  4QNL A;  4MB5 A;  1GXD A;  4NZ4 A;  3HON A;  2FN2 A;  2XD5 A;  2Y2H A;  3MQL A;  4LG2 A;  3L28 A;  2Y2I A;  2Y2O A;  1H8P A;  4IBJ A; 
#chains in the Genus database with same CATH homology
 3N3F A;  4IBF A;  4IBI A;  1Y1F X;  1YU2 A;  2Q17 A;  4NY2 A;  2HI8 X;  3L26 A;  2AIJ X;  2Y2J A;  3WX7 A;  3KS8 A;  4GHL A;  2HIB X;  3FKE A;  1Y1I X;  1YU1 A;  1YU0 A;  1YUE A;  2IOU A;  4IBG A;  2XD1 A;  4NZ1 A;  2AII X;  4NZ3 A;  2AFT X;  4IBD A;  3L25 A;  4GH9 A;  2JCH A;  4OJL A;  5BPV A;  4GHA A;  4OUI A;  1Y1J X;  4OJ6 A;  4IBC A;  2Y3C A;  4IBE A;  2BG1 A;  1Y1G X;  4IJE A;  1Y4J A;  2Y2L A;  1Y1E X;  4NYY A;  4OJP A;  2Y2G A;  1YU3 A;  1Y1H X;  4IBB A;  2Y2M A;  2JE5 A;  2Y2Q A;  1YU4 A;  2Y2N A;  3L27 A;  2Y2P A;  3HSH A;  4OJO A;  2AIK X;  3KS4 A;  4NZ5 A;  4NYU A;  3L29 A;  2AFY X;  4IBK A;  4OJ5 A;  4IJF A;  2UWX A;  2Y2K A;  2FFF B;  1Z70 X;  3L2A A;  4QNL A;  4NZ4 A;  3HON A;  2XD5 A;  2Y2H A;  4LG2 A;  3L28 A;  2Y2I A;  2Y2O A;  4IBJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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