2IPIA

Crystal structure of aclacinomycin oxidoreductase
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
492
structure length
492
Chain Sequence
ALVKVDRVDRRYQDLVTRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAVIDMSQMRQVFYDSGKRAFAVEPGATLGETYRALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDGVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTPGATGTDPSQLLPKAPTSTLRHIVTWDWSALTEEAFTRIIDNHGAWHQSNSAAGTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSLYSYGGKVNSVPETATATAQRDSIIKVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEGTFINYPDVDLVDERWNTSGVPWYTLYYKGNYPRLQKVKARWDPRDVFRHALSVRPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure determination by multiwavelength anomalous diffraction of aclacinomycin oxidoreductase: indications of multidomain pseudomerohedral twinning.
pubmed doi rcsb
source organism Streptomyces galilaeus
molecule tags Oxidoreductase
molecule keywords Aclacinomycin oxidoreductase (AknOx)
total genus 148
structure length 492
sequence length 492
chains with identical sequence B, C, D
ec nomenclature ec 1.1.3.45: Aclacinomycin-N oxidase.
pdb deposition date 2006-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.465.40 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 2ipiA01
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 2ipiA02
3FWAA 4PWCA 4PVEA 3W8WA 3FW8A 2UUVA 4PVKA 3GSYA 5I1VA 2BVGA 3HSUA 1ZR6A 2WDWA 3POPA 5L6GA 3D2DA 4DNSA 5K8EA 2Y3RA 4EC3A 3RJ8A 2IPIA 4PVHA 4PVJA 3D2JA 3FW9A 5L6FA 3RJAA 5I1WA 2Y3SA 4UD8A 2UUUA 3PQBA 3FW7A 3TSHA 3D2HA 4PZFA 3TSJA 3VTEA 2BVHA 2BVFA 5AWVA 4PWBA 5D79A 3W8ZA 2Y08A 3W8XA 4XLOA 2Y4GA 2AXRA
chains in the Genus database with same CATH superfamily
1E8FA 2VFUA 3BW7A 1FFVC 1W1LA 2UUVA 1FO4A 3GSYA 3JS8A 2VFRA 4JB1A 5L6GA 3POPA 5K8EA 1FFUC 3TX1A 3NRZB 5G5GB 5I1WA 1HSKA 1W1MA 4PZFA 1SB3B 2E3TA 1ZXIC 3NVYB 1WYGA 1DIQA 1E8HA 2Y08A 2I0KA 1UXYA 3W8XA 2QKNA 2W3RA 1DIIA 1VAOA 3DEDA 2P13A 1F0XA 1W1JA 1W1KA 5FXPA 4PYTA 2O3GA 1N5XA 5G5HB 4BBYA 1RM6B 3I99A 4OALA 5HMRA 1ZR6A 5FXFA 3DQ0A 4DNSA 2Y3RA 1DZNA 2IPIA 4PVHA 4PVJA 2Q4WA 3S1FA 3D2JA 3FW9A 4BC7A 1JROA 4MLAA 2Y3SA 4UD8A 4ZOHB 2EXRA 2R2ZA 3D2HA 2R8DA 3VTEA 5FXDA 5AE3A 1AHUA 5AWVA 2YVSA 3S1EA 1N62C 3W8ZA 5HQXA 1W1SA 2PLIA 3KJMA 3S1DA 2VFVA 2AXRA 4PWCA 5FXEA 1W1OA 2P3HA 3W8WA 3AMZA 1FIQB 1AHZA 5I1VA 2BVGA 3HSUA 4ML8A 1QLTA 3NS1B 4EC3A 1AHVA 1T3QC 3RJ8A 4BCAA 1W1RA 1I19A 1E0YA 1VDVA 2W54A 2NQWA 2GQTA 2MBRA 3NVWB 5AE1A 1MBTA 3PM9A 1E8GA 1N60C 3EUB3 3HRDC 1WVEA 4HG0A 2BVFA 4PWBA 3AM9A 2W55A 4JAYA 2Y4GA 3FWAA 4PVEA 1JRPA 2W3SA 3FW8A 1N61C 1N5WC 5ADZA 1WVFA 3AN1A 4PVKA 3S1CA 2P4PA 3ETRB 3C0PA 4BC9A 2WDWA 3D2DA 2VFSA 1QLUA 2VAOA 3LAEA 1W1QA 4O95A 3B9JB 2OAIA 1V97A 5L6FA 3RJAA 3SR6B 3LLBA 3NVVB 2UUUA 2Q85A 3FW7A 2PLSA 3PQBA 3TSHA 3TSJA 2BVHA 5HHZA 2RK5A 2VFTA 5AE2A 2QPMA 1N63C 2GQUA 5D79A 1MBBA 3NVZB 4XLOA
chains in the Genus database with same CATH topology
1E8FA 2VFUA 3BW7A 1FFVC 1W1LA 2UUVA 1FO4A 3GSYA 3JS8A 2VFRA 4JB1A 5L6GA 3POPA 5K8EA 1FFUC 3TX1A 3NRZB 5G5GB 5I1WA 1HSKA 1W1MA 4PZFA 1SB3B 2E3TA 1ZXIC 3NVYB 1WYGA 1DIQA 1E8HA 2Y08A 2I0KA 1UXYA 3W8XA 2QKNA 2W3RA 1DIIA 1VAOA 3DEDA 2P13A 1F0XA 1W1JA 1W1KA 5FXPA 4PYTA 2O3GA 1N5XA 5G5HB 4BBYA 1RM6B 3I99A 4OALA 5HMRA 1ZR6A 5FXFA 3DQ0A 4DNSA 2Y3RA 1DZNA 2IPIA 4PVHA 4PVJA 2Q4WA 3S1FA 3D2JA 3FW9A 4BC7A 1JROA 4MLAA 2Y3SA 4UD8A 4ZOHB 2EXRA 2R2ZA 3D2HA 2R8DA 3VTEA 5FXDA 5AE3A 1AHUA 5AWVA 2YVSA 3S1EA 1N62C 3W8ZA 5HQXA 1W1SA 2PLIA 3KJMA 3S1DA 2VFVA 2AXRA 4PWCA 5FXEA 1W1OA 2P3HA 3W8WA 3AMZA 1FIQB 1AHZA 5I1VA 2BVGA 3HSUA 4ML8A 1QLTA 3NS1B 4EC3A 1AHVA 1T3QC 3RJ8A 4BCAA 1W1RA 1I19A 1E0YA 1VDVA 2W54A 2NQWA 2GQTA 2MBRA 3NVWB 5AE1A 1MBTA 3PM9A 1E8GA 1N60C 3EUB3 3HRDC 1WVEA 4HG0A 2BVFA 4PWBA 3AM9A 2W55A 4JAYA 2Y4GA 3FWAA 4PVEA 1JRPA 2W3SA 3FW8A 1N61C 1N5WC 5ADZA 1WVFA 3AN1A 4PVKA 3S1CA 2P4PA 3ETRB 3C0PA 4BC9A 2WDWA 3D2DA 2VFSA 1QLUA 2VAOA 3LAEA 1W1QA 4O95A 3B9JB 2OAIA 1V97A 5L6FA 3RJAA 3SR6B 3LLBA 3NVVB 2UUUA 2Q85A 3FW7A 2PLSA 3PQBA 3TSHA 3TSJA 2BVHA 5HHZA 2RK5A 2VFTA 5AE2A 2QPMA 1N63C 2GQUA 5D79A 1MBBA 3NVZB 4XLOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FWA A;  4PWC A;  4PVE A;  3W8W A;  3FW8 A;  2UUV A;  4PVK A;  3GSY A;  5I1V A;  2BVG A;  3HSU A;  1ZR6 A;  2WDW A;  3POP A;  5L6G A;  3D2D A;  4DNS A;  5K8E A;  2Y3R A;  4EC3 A;  3RJ8 A;  2IPI A;  4PVH A;  4PVJ A;  3D2J A;  3FW9 A;  5L6F A;  3RJA A;  5I1W A;  2Y3S A;  4UD8 A;  2UUU A;  3PQB A;  3FW7 A;  3TSH A;  3D2H A;  4PZF A;  3TSJ A;  3VTE A;  2BVH A;  2BVF A;  5AWV A;  4PWB A;  5D79 A;  3W8Z A;  2Y08 A;  3W8X A;  4XLO A;  2Y4G A;  2AXR A; 
#chains in the Genus database with same CATH topology
 1E8F A;  2VFU A;  3BW7 A;  1FFV C;  1W1L A;  2UUV A;  1FO4 A;  3GSY A;  3JS8 A;  2VFR A;  4JB1 A;  5L6G A;  3POP A;  5K8E A;  1FFU C;  3TX1 A;  3NRZ B;  5G5G B;  5I1W A;  1HSK A;  1W1M A;  4PZF A;  1SB3 B;  2E3T A;  1ZXI C;  3NVY B;  1WYG A;  1DIQ A;  1E8H A;  2Y08 A;  2I0K A;  1UXY A;  3W8X A;  2QKN A;  2W3R A;  1DII A;  1VAO A;  3DED A;  2P13 A;  1F0X A;  1W1J A;  1W1K A;  5FXP A;  4PYT A;  2O3G A;  1N5X A;  5G5H B;  4BBY A;  1RM6 B;  3I99 A;  4OAL A;  5HMR A;  1ZR6 A;  5FXF A;  3DQ0 A;  4DNS A;  2Y3R A;  1DZN A;  2IPI A;  4PVH A;  4PVJ A;  2Q4W A;  3S1F A;  3D2J A;  3FW9 A;  4BC7 A;  1JRO A;  4MLA A;  2Y3S A;  4UD8 A;  4ZOH B;  2EXR A;  2R2Z A;  3D2H A;  2R8D A;  3VTE A;  5FXD A;  5AE3 A;  1AHU A;  5AWV A;  2YVS A;  3S1E A;  1N62 C;  3W8Z A;  5HQX A;  1W1S A;  2PLI A;  3KJM A;  3S1D A;  2VFV A;  2AXR A;  4PWC A;  5FXE A;  1W1O A;  2P3H A;  3W8W A;  3AMZ A;  1FIQ B;  1AHZ A;  5I1V A;  2BVG A;  3HSU A;  4ML8 A;  1QLT A;  3NS1 B;  4EC3 A;  1AHV A;  1T3Q C;  3RJ8 A;  4BCA A;  1W1R A;  1I19 A;  1E0Y A;  1VDV A;  2W54 A;  2NQW A;  2GQT A;  2MBR A;  3NVW B;  5AE1 A;  1MBT A;  3PM9 A;  1E8G A;  1N60 C;  3EUB 3;  3HRD C;  1WVE A;  4HG0 A;  2BVF A;  4PWB A;  3AM9 A;  2W55 A;  4JAY A;  2Y4G A;  3FWA A;  4PVE A;  1JRP A;  2W3S A;  3FW8 A;  1N61 C;  1N5W C;  5ADZ A;  1WVF A;  3AN1 A;  4PVK A;  3S1C A;  2P4P A;  3ETR B;  3C0P A;  4BC9 A;  2WDW A;  3D2D A;  2VFS A;  1QLU A;  2VAO A;  3LAE A;  1W1Q A;  4O95 A;  3B9J B;  2OAI A;  1V97 A;  5L6F A;  3RJA A;  3SR6 B;  3LLB A;  3NVV B;  2UUU A;  2Q85 A;  3FW7 A;  2PLS A;  3PQB A;  3TSH A;  3TSJ A;  2BVH A;  5HHZ A;  2RK5 A;  2VFT A;  5AE2 A;  2QPM A;  1N63 C;  2GQU A;  5D79 A;  1MBB A;  3NVZ B;  4XLO A; 
#chains in the Genus database with same CATH homology
 1E8F A;  2VFU A;  3BW7 A;  1FFV C;  1W1L A;  2UUV A;  1FO4 A;  3GSY A;  3JS8 A;  2VFR A;  4JB1 A;  5L6G A;  3POP A;  5K8E A;  1FFU C;  3TX1 A;  3NRZ B;  5G5G B;  5I1W A;  1HSK A;  1W1M A;  4PZF A;  1SB3 B;  2E3T A;  1ZXI C;  3NVY B;  1WYG A;  1DIQ A;  1E8H A;  2Y08 A;  2I0K A;  1UXY A;  3W8X A;  2QKN A;  2W3R A;  1DII A;  1VAO A;  3DED A;  2P13 A;  1F0X A;  1W1J A;  1W1K A;  5FXP A;  4PYT A;  2O3G A;  1N5X A;  5G5H B;  4BBY A;  1RM6 B;  3I99 A;  4OAL A;  5HMR A;  1ZR6 A;  5FXF A;  3DQ0 A;  4DNS A;  2Y3R A;  1DZN A;  2IPI A;  4PVH A;  4PVJ A;  2Q4W A;  3S1F A;  3D2J A;  3FW9 A;  4BC7 A;  1JRO A;  4MLA A;  2Y3S A;  4UD8 A;  4ZOH B;  2EXR A;  2R2Z A;  3D2H A;  2R8D A;  3VTE A;  5FXD A;  5AE3 A;  1AHU A;  5AWV A;  2YVS A;  3S1E A;  1N62 C;  3W8Z A;  5HQX A;  1W1S A;  2PLI A;  3KJM A;  3S1D A;  2VFV A;  2AXR A;  4PWC A;  5FXE A;  1W1O A;  2P3H A;  3W8W A;  3AMZ A;  1FIQ B;  1AHZ A;  5I1V A;  2BVG A;  3HSU A;  4ML8 A;  1QLT A;  3NS1 B;  4EC3 A;  1AHV A;  1T3Q C;  3RJ8 A;  4BCA A;  1W1R A;  1I19 A;  1E0Y A;  1VDV A;  2W54 A;  2NQW A;  2GQT A;  2MBR A;  3NVW B;  5AE1 A;  1MBT A;  3PM9 A;  1E8G A;  1N60 C;  3EUB 3;  3HRD C;  1WVE A;  4HG0 A;  2BVF A;  4PWB A;  3AM9 A;  2W55 A;  4JAY A;  2Y4G A;  3FWA A;  4PVE A;  1JRP A;  2W3S A;  3FW8 A;  1N61 C;  1N5W C;  5ADZ A;  1WVF A;  3AN1 A;  4PVK A;  3S1C A;  2P4P A;  3ETR B;  3C0P A;  4BC9 A;  2WDW A;  3D2D A;  2VFS A;  1QLU A;  2VAO A;  3LAE A;  1W1Q A;  4O95 A;  3B9J B;  2OAI A;  1V97 A;  5L6F A;  3RJA A;  3SR6 B;  3LLB A;  3NVV B;  2UUU A;  2Q85 A;  3FW7 A;  2PLS A;  3PQB A;  3TSH A;  3TSJ A;  2BVH A;  5HHZ A;  2RK5 A;  2VFT A;  5AE2 A;  2QPM A;  1N63 C;  2GQU A;  5D79 A;  1MBB A;  3NVZ B;  4XLO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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