2ISKA

Blub bound to flavin anion (charge transfer complex)
Total Genus 66
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
219
structure length
219
Chain Sequence
LTAAGAFSSDERAAVYRAIETRRDVRDEFLPEPLSEELIARLLGAAHQAPSVGFMQPWNFVLVRQDETREKVWQAFQRANDEAAEMFSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPDHVEIVAWLCLGFVDRLYQEPELAAKGWRQRLPLEDLVFEEGWGVR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Flavoprotein
molecule keywords BluB
publication title BluB cannibalizes flavin to form the lower ligand of vitamin B12.
pubmed doi rcsb
source organism Sinorhizobium meliloti
total genus 66
structure length 219
sequence length 219
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 1.13.11.79: 5,6-dimethylbenzimidazole synthase.
pdb deposition date 2006-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 2iskA01
3TO0A 2WQFA 5KO7A 2IFAA 4EO3A 2FREA 4QLXA 1ICRA 1NECA 3TNZA 4BN7A 2HAYA 3GH8A 3E10A 1NOXA 3GAGA 1OO6A 3GB5A 3G14A 1V5ZA 2ISKA 3GE5A 4XOMA 2H0UA 3BM2A 5J6CA 2WZVA 2ISLA 3QDLA 1OO5A 1IDTA 4BN8A 1F5VA 3K6HA 3HJ9A 2WZWA 3EOFA 1KQBA 2YMVA 1KQDA 3PXVA 4TTBA 4BNBA 2ISJA 5KRDA 4XOQA 1VFRA 5KO8A 4BN6A 1V5YA 3OF4A 1DS7A 3GBHA 4DN2A 3KWKA 3BM1A 4TTCA 2I7HA 1YWQA 3GR3A 3GFDA 3GFAA 4BN9A 3N2SA 1VKWA 3EK3A 5HDJA 1KQCA 2B67A 3X21A 1YLUA 2BKJA 3HZNA 3KOQA 1YKIA 4URPA 5HEIA 4XOOA 3H4OA 1OOQA 1ZCHA 3GE6A 2R01A 1OONA 3X22A 3HOIA 3E39A 3M5KA 1BKJA 4QLYA 1ICUA 1YLRA 4G8SA 3BEMA 1ICVA 3EO8A 3EO7A
chains in the Genus database with same CATH superfamily
3TO0A 2WQFA 5KO7A 2IFAA 4EO3A 2FREA 4QLXA 1ICRA 1NECA 3TNZA 4BN7A 2HAYA 3GH8A 3E10A 1NOXA 3GAGA 1OO6A 3GB5A 3G14A 1V5ZA 2ISKA 3GE5A 4XOMA 2H0UA 3BM2A 5J6CA 2WZVA 2ISLA 3QDLA 1OO5A 1IDTA 4BN8A 1F5VA 3K6HA 3HJ9A 2WZWA 3EOFA 1KQBA 2YMVA 1KQDA 3PXVA 4TTBA 4BNBA 2ISJA 5KRDA 4XOQA 1VFRA 5KO8A 4BN6A 1V5YA 3OF4A 1DS7A 3GBHA 4DN2A 3KWKA 3BM1A 4TTCA 2I7HA 1YWQA 3GR3A 3GFDA 3GFAA 4BN9A 3N2SA 1VKWA 3EK3A 5HDJA 1KQCA 2B67A 3X21A 1YLUA 2BKJA 3HZNA 3KOQA 1YKIA 4URPA 5HEIA 4XOOA 3H4OA 1OOQA 1ZCHA 3GE6A 2R01A 1OONA 3X22A 3HOIA 3E39A 3M5KA 1BKJA 4QLYA 1ICUA 1J6RA 1YLRA 4G8SA 3BEMA 1ICVA 3EO8A 3EO7A
chains in the Genus database with same CATH topology
3TO0A 2WQFA 5KO7A 2IFAA 4EO3A 2FREA 4QLXA 1ICRA 1NECA 3TNZA 4BN7A 2HAYA 3GH8A 3E10A 1NOXA 3GAGA 1OO6A 3GB5A 3G14A 1V5ZA 2ISKA 3GE5A 4XOMA 2H0UA 3BM2A 5J6CA 2WZVA 2ISLA 3QDLA 1OO5A 1IDTA 4BN8A 1F5VA 3K6HA 3HJ9A 2WZWA 3EOFA 1KQBA 2YMVA 1KQDA 3PXVA 4TTBA 4BNBA 2ISJA 5KRDA 4XOQA 1VFRA 5KO8A 4BN6A 1V5YA 3OF4A 1DS7A 3GBHA 4DN2A 3KWKA 3BM1A 4TTCA 2I7HA 1YWQA 3GR3A 3GFDA 3GFAA 4BN9A 3N2SA 1VKWA 3EK3A 5HDJA 1KQCA 2B67A 3X21A 1YLUA 2BKJA 3HZNA 3KOQA 1YKIA 4URPA 5HEIA 4XOOA 3H4OA 1OOQA 1ZCHA 3GE6A 2R01A 1OONA 3X22A 3HOIA 3E39A 3M5KA 1BKJA 4QLYA 1ICUA 1J6RA 1YLRA 4G8SA 3BEMA 1ICVA 3EO8A 3EO7A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3TO0 A;  2WQF A;  5KO7 A;  2IFA A;  4EO3 A;  2FRE A;  4QLX A;  1ICR A;  1NEC A;  3TNZ A;  4BN7 A;  2HAY A;  3GH8 A;  3E10 A;  1NOX A;  3GAG A;  1OO6 A;  3GB5 A;  3G14 A;  1V5Z A;  2ISK A;  3GE5 A;  4XOM A;  2H0U A;  3BM2 A;  5J6C A;  2WZV A;  2ISL A;  3QDL A;  1OO5 A;  1IDT A;  4BN8 A;  1F5V A;  3K6H A;  3HJ9 A;  2WZW A;  3EOF A;  1KQB A;  2YMV A;  1KQD A;  3PXV A;  4TTB A;  4BNB A;  2ISJ A;  5KRD A;  4XOQ A;  1VFR A;  5KO8 A;  4BN6 A;  1V5Y A;  3OF4 A;  1DS7 A;  3GBH A;  4DN2 A;  3KWK A;  3BM1 A;  4TTC A;  2I7H A;  1YWQ A;  3GR3 A;  3GFD A;  3GFA A;  4BN9 A;  3N2S A;  1VKW A;  3EK3 A;  5HDJ A;  1KQC A;  2B67 A;  3X21 A;  1YLU A;  2BKJ A;  3HZN A;  3KOQ A;  1YKI A;  4URP A;  5HEI A;  4XOO A;  3H4O A;  1OOQ A;  1ZCH A;  3GE6 A;  2R01 A;  1OON A;  3X22 A;  3HOI A;  3E39 A;  3M5K A;  1BKJ A;  4QLY A;  1ICU A;  1YLR A;  4G8S A;  3BEM A;  1ICV A;  3EO8 A;  3EO7 A; 
#chains in the Genus database with same CATH topology
 3TO0 A;  2WQF A;  5KO7 A;  2IFA A;  4EO3 A;  2FRE A;  4QLX A;  1ICR A;  1NEC A;  3TNZ A;  4BN7 A;  2HAY A;  3GH8 A;  3E10 A;  1NOX A;  3GAG A;  1OO6 A;  3GB5 A;  3G14 A;  1V5Z A;  2ISK A;  3GE5 A;  4XOM A;  2H0U A;  3BM2 A;  5J6C A;  2WZV A;  2ISL A;  3QDL A;  1OO5 A;  1IDT A;  4BN8 A;  1F5V A;  3K6H A;  3HJ9 A;  2WZW A;  3EOF A;  1KQB A;  2YMV A;  1KQD A;  3PXV A;  4TTB A;  4BNB A;  2ISJ A;  5KRD A;  4XOQ A;  1VFR A;  5KO8 A;  4BN6 A;  1V5Y A;  3OF4 A;  1DS7 A;  3GBH A;  4DN2 A;  3KWK A;  3BM1 A;  4TTC A;  2I7H A;  1YWQ A;  3GR3 A;  3GFD A;  3GFA A;  4BN9 A;  3N2S A;  1VKW A;  3EK3 A;  5HDJ A;  1KQC A;  2B67 A;  3X21 A;  1YLU A;  2BKJ A;  3HZN A;  3KOQ A;  1YKI A;  4URP A;  5HEI A;  4XOO A;  3H4O A;  1OOQ A;  1ZCH A;  3GE6 A;  2R01 A;  1OON A;  3X22 A;  3HOI A;  3E39 A;  3M5K A;  1BKJ A;  4QLY A;  1ICU A;  1J6R A;  1YLR A;  4G8S A;  3BEM A;  1ICV A;  3EO8 A;  3EO7 A; 
#chains in the Genus database with same CATH homology
 3TO0 A;  2WQF A;  5KO7 A;  2IFA A;  4EO3 A;  2FRE A;  4QLX A;  1ICR A;  1NEC A;  3TNZ A;  4BN7 A;  2HAY A;  3GH8 A;  3E10 A;  1NOX A;  3GAG A;  1OO6 A;  3GB5 A;  3G14 A;  1V5Z A;  2ISK A;  3GE5 A;  4XOM A;  2H0U A;  3BM2 A;  5J6C A;  2WZV A;  2ISL A;  3QDL A;  1OO5 A;  1IDT A;  4BN8 A;  1F5V A;  3K6H A;  3HJ9 A;  2WZW A;  3EOF A;  1KQB A;  2YMV A;  1KQD A;  3PXV A;  4TTB A;  4BNB A;  2ISJ A;  5KRD A;  4XOQ A;  1VFR A;  5KO8 A;  4BN6 A;  1V5Y A;  3OF4 A;  1DS7 A;  3GBH A;  4DN2 A;  3KWK A;  3BM1 A;  4TTC A;  2I7H A;  1YWQ A;  3GR3 A;  3GFD A;  3GFA A;  4BN9 A;  3N2S A;  1VKW A;  3EK3 A;  5HDJ A;  1KQC A;  2B67 A;  3X21 A;  1YLU A;  2BKJ A;  3HZN A;  3KOQ A;  1YKI A;  4URP A;  5HEI A;  4XOO A;  3H4O A;  1OOQ A;  1ZCH A;  3GE6 A;  2R01 A;  1OON A;  3X22 A;  3HOI A;  3E39 A;  3M5K A;  1BKJ A;  4QLY A;  1ICU A;  1J6R A;  1YLR A;  4G8S A;  3BEM A;  1ICV A;  3EO8 A;  3EO7 A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite