2IT9A

Crystal structure of a protein with unknown function from duf155 family (yp_292156.1) from prochlorococcus sp. natl2a at 1.80 a resolution
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
123
structure length
120
Chain Sequence
GMIKKEGPGWRIIFDSSRDNFSTLIGGETWAIELDKSEWKILVEVVMELCDQYKLVKEQLMGDEDITLELERRPWLAILNGDQYGWNLRLILSAFNRGAEVYWPRHVTNNVVNAMRSMWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics/unknown function
molecule keywords Hypothetical protein
publication title Crystal structure of hypothetical protein (YP_292156.1) from Prochlorococcus sp. NATL2A at 1.80 A resolution
rcsb
source organism Prochlorococcus marinus
total genus 31
structure length 120
sequence length 123
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2006-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08848 DUF1818 Domain of unknown function (DUF1818)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.31.10 Mainly Beta Roll Transcriptional Co-activator pc4; Chain A Transcriptional Coactivator Pc4; Chain A 2it9A00
3N1HA 3R9YA 2NVNA 2IT9A 3N1IA 4KOOA 1PCFA 1L3AA 4KOPA 4BG7A 3N1KA 3RA0A 3R9ZA 4USGA 4BHMA 2PHEA 4KOQA 3N1JA 3N1LA 2C62A 4AGHA
chains in the Genus database with same CATH superfamily
3N1HA 3MTVA 3K44A 4BOBA 3R9YA 2NVNA 2M4FA 2IT9A 2GJED 4BXMA 2GJEA 4KOOA 3N1IA 3CM1A 2GIDA 2GIAB 1PCFA 1L3AA 4KOPA 4BG7A 4BODA 3N1KA 5FGPA 2GIDB 3RA0A 3OBHA 3R9ZA 4USGA 4BHMA 2PHEA 4J38A 4KOQA 4BF3A 3N1JA 3N1LA 2C62A 2GIAA 4AGHA
chains in the Genus database with same CATH topology
3N1HA 3R9YA 2NVNA 2IT9A 3N1IA 4KOOA 1PCFA 1L3AA 4KOPA 4BG7A 3N1KA 3RA0A 3R9ZA 4USGA 4BHMA 2PHEA 4KOQA 3N1JA 3N1LA 2C62A 4AGHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N1H A;  3R9Y A;  2NVN A;  2IT9 A;  3N1I A;  4KOO A;  1PCF A;  1L3A A;  4KOP A;  4BG7 A;  3N1K A;  3RA0 A;  3R9Z A;  4USG A;  4BHM A;  2PHE A;  4KOQ A;  3N1J A;  3N1L A;  2C62 A;  4AGH A; 
#chains in the Genus database with same CATH topology
 3N1H A;  3MTV A;  3K44 A;  4BOB A;  3R9Y A;  2NVN A;  2M4F A;  2IT9 A;  2GJE D;  4BXM A;  2GJE A;  4KOO A;  3N1I A;  3CM1 A;  2GID A;  2GIA B;  1PCF A;  1L3A A;  4KOP A;  4BG7 A;  4BOD A;  3N1K A;  5FGP A;  2GID B;  3RA0 A;  3OBH A;  3R9Z A;  4USG A;  4BHM A;  2PHE A;  4J38 A;  4KOQ A;  4BF3 A;  3N1J A;  3N1L A;  2C62 A;  2GIA A;  4AGH A; 
#chains in the Genus database with same CATH homology
 3N1H A;  3R9Y A;  2NVN A;  2IT9 A;  3N1I A;  4KOO A;  1PCF A;  1L3A A;  4KOP A;  4BG7 A;  3N1K A;  3RA0 A;  3R9Z A;  4USG A;  4BHM A;  2PHE A;  4KOQ A;  3N1J A;  3N1L A;  2C62 A;  4AGH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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