2IUCA

Structure of alkaline phosphatase from the antarctic bacterium tab5
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
Knots found
sequence length
344
structure length
340
Chain Sequence
KTPKNVILLISDGAGLSQISSTFYFKEGTPNYTQFKNIGLIKTSSSREDVTDSASGATAFSCGIKTYNAAIGVADDSTAVKSIVEIAALNNIKTGVVATSSITHATPASFYAHALNRGLEEEIAMDMTESDLDFFAGGGLNYFTSRKDKKDVLAILKGNQFTINTTGLTDFSSIASNRKMGFLLADEAMPTMESGRGNFLSAATDLAIQFLSKDNSAFFIMSEGSQIDWGGHANNASYLISEINDFDDAIGTALAFAKKDGNTLVIVTSDHETGGFTLAAKKNKREYSDYTSIGPSFSTGGHSATLIPVFAYGPGSEEFIGIYENNEIFHKILKVTKWNQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Alkaline Phosphatase from the Antarctic Bacterium Tab5.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
molecule tags Hydrolase
source organism Antarctic bacterium tab5
total genus 133
structure length 340
sequence length 344
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2006-06-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2iucA00
2G9YA 4GTXA 4KJDA 3BDHA 4UOOA 1B8JA 3ED4A 3MK0A 4YR1A 1EW9A 3M8WA 1O99A 5IJSA 3A52A 1Y6VA 5GOVA 4UOPA 3NKPA 2X98A 1AJBA 3CMRA 1KH5A 1KH4A 4LRFA 3DPCA 1SHQA 1KHNA 4B56A 3TWZA 3WBHA 4KAVA 3OT9A 1E3CP 3NKOA 4KM4A 1AJDA 4MY4A 4UPHA 4FDIA 1EW2A 4KAYA 3Q3QA 1SHNA 5GRRA 1O98A 4ZGAA 1ALIA 5TJ3A 5C66A 1AJAA 1ELXA 1HDHA 3T00A 5HRTA 5L0EA 1KHLA 1KH7A 4GTYA 2IUCB 5EGEA 1E2SP 1KHKA 4LRDA 3B5QA 3IGZB 4MHXA 3NKQA 5IJQA 4LQYA 4LR2A 3SZYA 3WAXA 1N2KA 4ZG6A 1KHJA 3M8YA 3UN2A 2D1GA 1ELZA 2GLQA 2W5XA 3NKMA 5KXAA 5AJ9A 4FDJA 1ELYA 3E2DA 4GTWA 2QZUA 5DLWA 3NKNA 4KJGA 4CXKA 4TN0A 3IDDA 2ZKTA 4UPIA 2VQRA 2W5WA 1P49A 4UPLA 2W5QA 1HQAA 1ANJA 3NVLA 3IGYB 2GSOA 1EJJA 1AUKA 1ZEBA 3T02A 1ALHA 3KD8A 2IUCA 1ED9A 3M7VA 1E33P 3SZZA 1ZEDA 4LR7A 3MK1A 4N7TA 1KH9A 5EGHA 4GTZA 3TG0A 2GA3A 1N2LA 5LQQA 4CXSA 4CYRA 2XR9A 3NKRA 3UO0A 2W5TA 4LRAA 1FSUA 3UN5A 2W5SA 1EI6A 3DYCA 3WAYA 3MK2A 1AJCA 3WAVA 4LRCA 4UPKA 2ANHA 2W5RA 4ZG7A 3LXQA 5DLVA 4ZG9A 4LR9A 1URAA 3T01A 1ZEFA 5LRNA 2GSUA 3UNYA 1ALJA 1K7HA 2XRGA 4MIVA 1ALKA 3WAWA 2W5VA 5LRMA 1EQJA 4LREA 5INHA 1ED8A 3BDFA 4UORA 3BDGB 1HJKA 3BDGA 4LRBA 2W8SA 2GSNA 1E1ZP 5L0KA 3UN3A 1EW8A 2RH6A 3M8ZA 4NWJA 5LIAA 4LR8A 1Y7AA 2W8DA 4CXUA 4QAXA 5K4PA 3TX0A 5DLTA 4NWXA 5L0BA 1URBA 1ANIA 2IFYA 4CYSA
chains in the Genus database with same CATH superfamily
2G9YA 4GTXA 4KJDA 3BDHA 4UOOA 1B8JA 3ED4A 3MK0A 4YR1A 1EW9A 3M8WA 1O99A 5IJSA 3A52A 1Y6VA 5GOVA 4UOPA 3NKPA 2X98A 1AJBA 3CMRA 1KH5A 1KH4A 4LRFA 3DPCA 1SHQA 1KHNA 4B56A 3TWZA 3WBHA 4KAVA 3OT9A 1E3CP 3NKOA 4KM4A 1AJDA 4MY4A 4UPHA 4FDIA 1EW2A 4KAYA 3Q3QA 1SHNA 5GRRA 1O98A 4ZGAA 1ALIA 5TJ3A 5C66A 1AJAA 1ELXA 1HDHA 3T00A 5HRTA 5L0EA 1KHLA 1KH7A 4GTYA 2IUCB 5EGEA 1E2SP 1KHKA 4LRDA 3B5QA 3IGZB 4MHXA 3NKQA 5IJQA 4LQYA 4LR2A 3SZYA 3WAXA 1N2KA 4ZG6A 1KHJA 3M8YA 3UN2A 2D1GA 1ELZA 2GLQA 2W5XA 3NKMA 5KXAA 5AJ9A 4FDJA 1ELYA 3E2DA 4GTWA 2QZUA 5DLWA 3NKNA 4KJGA 4CXKA 4TN0A 3IDDA 2ZKTA 4UPIA 2VQRA 2W5WA 1P49A 4UPLA 2W5QA 1HQAA 1ANJA 3NVLA 3IGYB 2GSOA 1EJJA 1AUKA 1ZEBA 3T02A 1ALHA 3KD8A 2IUCA 1ED9A 3M7VA 1E33P 3SZZA 1ZEDA 4LR7A 3MK1A 4N7TA 1KH9A 5EGHA 4GTZA 3TG0A 2GA3A 1N2LA 5LQQA 4CXSA 4CYRA 2XR9A 3NKRA 3UO0A 2W5TA 4LRAA 1FSUA 3UN5A 2W5SA 1EI6A 3DYCA 3WAYA 3MK2A 1AJCA 3WAVA 4LRCA 4UPKA 2ANHA 2W5RA 4ZG7A 3LXQA 5DLVA 4ZG9A 4LR9A 1URAA 3T01A 1ZEFA 5LRNA 2GSUA 3UNYA 1ALJA 1K7HA 2XRGA 4MIVA 1ALKA 3WAWA 2W5VA 5LRMA 1EQJA 4LREA 5INHA 1ED8A 3BDFA 4UORA 3BDGB 1HJKA 3BDGA 4LRBA 2W8SA 2GSNA 1E1ZP 5L0KA 3UN3A 1EW8A 2RH6A 3M8ZA 4NWJA 5LIAA 4LR8A 1Y7AA 2W8DA 4CXUA 4QAXA 5K4PA 3TX0A 5DLTA 4NWXA 5L0BA 1URBA 1ANIA 2IFYA 4CYSA
chains in the Genus database with same CATH topology
2G9YA 4GTXA 4KJDA 3BDHA 4UOOA 1B8JA 3ED4A 3MK0A 4YR1A 1EW9A 3M8WA 1O99A 5IJSA 3A52A 1Y6VA 5GOVA 4UOPA 3NKPA 2X98A 1AJBA 3CMRA 1KH5A 1KH4A 4LRFA 3DPCA 1SHQA 1KHNA 4B56A 3TWZA 3WBHA 4KAVA 3OT9A 1E3CP 3NKOA 4KM4A 1AJDA 4MY4A 4UPHA 4FDIA 1EW2A 4KAYA 3Q3QA 1SHNA 5GRRA 1O98A 4ZGAA 1ALIA 5TJ3A 5C66A 1AJAA 1ELXA 1HDHA 3T00A 5HRTA 5L0EA 1KHLA 1KH7A 4GTYA 2IUCB 5EGEA 1E2SP 1KHKA 4LRDA 3B5QA 3IGZB 4MHXA 3NKQA 5IJQA 4LQYA 4LR2A 3SZYA 3WAXA 1N2KA 4ZG6A 1KHJA 3M8YA 3UN2A 2D1GA 1ELZA 2GLQA 2W5XA 3NKMA 5KXAA 5AJ9A 4FDJA 1ELYA 3E2DA 4GTWA 2QZUA 5DLWA 3NKNA 4KJGA 4CXKA 4TN0A 3IDDA 2ZKTA 4UPIA 2VQRA 2W5WA 1P49A 4UPLA 2W5QA 1HQAA 1ANJA 3NVLA 3IGYB 2GSOA 1EJJA 1AUKA 1ZEBA 3T02A 1ALHA 3KD8A 2IUCA 1ED9A 3M7VA 1E33P 3SZZA 1ZEDA 4LR7A 3MK1A 4N7TA 1KH9A 5EGHA 4GTZA 3TG0A 2GA3A 1N2LA 5LQQA 4CXSA 4CYRA 2XR9A 3NKRA 3UO0A 2W5TA 4LRAA 1FSUA 3UN5A 2W5SA 1EI6A 3DYCA 3WAYA 3MK2A 1AJCA 3WAVA 4LRCA 4UPKA 2ANHA 2W5RA 4ZG7A 3LXQA 5DLVA 4ZG9A 4LR9A 1URAA 3T01A 1ZEFA 5LRNA 2GSUA 3UNYA 1ALJA 1K7HA 2XRGA 4MIVA 1ALKA 3WAWA 2W5VA 5LRMA 1EQJA 4LREA 5INHA 1ED8A 3BDFA 4UORA 3BDGB 1HJKA 3BDGA 4LRBA 2W8SA 2GSNA 1E1ZP 5L0KA 3UN3A 1EW8A 2RH6A 3M8ZA 4NWJA 5LIAA 4LR8A 1Y7AA 2W8DA 4CXUA 4QAXA 5K4PA 3TX0A 5DLTA 4NWXA 5L0BA 1URBA 1ANIA 2IFYA 4CYSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G9Y A;  4GTX A;  4KJD A;  3BDH A;  4UOO A;  1B8J A;  3ED4 A;  3MK0 A;  4YR1 A;  1EW9 A;  3M8W A;  1O99 A;  5IJS A;  3A52 A;  1Y6V A;  5GOV A;  4UOP A;  3NKP A;  2X98 A;  1AJB A;  3CMR A;  1KH5 A;  1KH4 A;  4LRF A;  3DPC A;  1SHQ A;  1KHN A;  4B56 A;  3TWZ A;  3WBH A;  4KAV A;  3OT9 A;  1E3C P;  3NKO A;  4KM4 A;  1AJD A;  4MY4 A;  4UPH A;  4FDI A;  1EW2 A;  4KAY A;  3Q3Q A;  1SHN A;  5GRR A;  1O98 A;  4ZGA A;  1ALI A;  5TJ3 A;  5C66 A;  1AJA A;  1ELX A;  1HDH A;  3T00 A;  5HRT A;  5L0E A;  1KHL A;  1KH7 A;  4GTY A;  2IUC B;  5EGE A;  1E2S P;  1KHK A;  4LRD A;  3B5Q A;  3IGZ B;  4MHX A;  3NKQ A;  5IJQ A;  4LQY A;  4LR2 A;  3SZY A;  3WAX A;  1N2K A;  4ZG6 A;  1KHJ A;  3M8Y A;  3UN2 A;  2D1G A;  1ELZ A;  2GLQ A;  2W5X A;  3NKM A;  5KXA A;  5AJ9 A;  4FDJ A;  1ELY A;  3E2D A;  4GTW A;  2QZU A;  5DLW A;  3NKN A;  4KJG A;  4CXK A;  4TN0 A;  3IDD A;  2ZKT A;  4UPI A;  2VQR A;  2W5W A;  1P49 A;  4UPL A;  2W5Q A;  1HQA A;  1ANJ A;  3NVL A;  3IGY B;  2GSO A;  1EJJ A;  1AUK A;  1ZEB A;  3T02 A;  1ALH A;  3KD8 A;  2IUC A;  1ED9 A;  3M7V A;  1E33 P;  3SZZ A;  1ZED A;  4LR7 A;  3MK1 A;  4N7T A;  1KH9 A;  5EGH A;  4GTZ A;  3TG0 A;  2GA3 A;  1N2L A;  5LQQ A;  4CXS A;  4CYR A;  2XR9 A;  3NKR A;  3UO0 A;  2W5T A;  4LRA A;  1FSU A;  3UN5 A;  2W5S A;  1EI6 A;  3DYC A;  3WAY A;  3MK2 A;  1AJC A;  3WAV A;  4LRC A;  4UPK A;  2ANH A;  2W5R A;  4ZG7 A;  3LXQ A;  5DLV A;  4ZG9 A;  4LR9 A;  1URA A;  3T01 A;  1ZEF A;  5LRN A;  2GSU A;  3UNY A;  1ALJ A;  1K7H A;  2XRG A;  4MIV A;  1ALK A;  3WAW A;  2W5V A;  5LRM A;  1EQJ A;  4LRE A;  5INH A;  1ED8 A;  3BDF A;  4UOR A;  3BDG B;  1HJK A;  3BDG A;  4LRB A;  2W8S A;  2GSN A;  1E1Z P;  5L0K A;  3UN3 A;  1EW8 A;  2RH6 A;  3M8Z A;  4NWJ A;  5LIA A;  4LR8 A;  1Y7A A;  2W8D A;  4CXU A;  4QAX A;  5K4P A;  3TX0 A;  5DLT A;  4NWX A;  5L0B A;  1URB A;  1ANI A;  2IFY A;  4CYS A; 
#chains in the Genus database with same CATH topology
 2G9Y A;  4GTX A;  4KJD A;  3BDH A;  4UOO A;  1B8J A;  3ED4 A;  3MK0 A;  4YR1 A;  1EW9 A;  3M8W A;  1O99 A;  5IJS A;  3A52 A;  1Y6V A;  5GOV A;  4UOP A;  3NKP A;  2X98 A;  1AJB A;  3CMR A;  1KH5 A;  1KH4 A;  4LRF A;  3DPC A;  1SHQ A;  1KHN A;  4B56 A;  3TWZ A;  3WBH A;  4KAV A;  3OT9 A;  1E3C P;  3NKO A;  4KM4 A;  1AJD A;  4MY4 A;  4UPH A;  4FDI A;  1EW2 A;  4KAY A;  3Q3Q A;  1SHN A;  5GRR A;  1O98 A;  4ZGA A;  1ALI A;  5TJ3 A;  5C66 A;  1AJA A;  1ELX A;  1HDH A;  3T00 A;  5HRT A;  5L0E A;  1KHL A;  1KH7 A;  4GTY A;  2IUC B;  5EGE A;  1E2S P;  1KHK A;  4LRD A;  3B5Q A;  3IGZ B;  4MHX A;  3NKQ A;  5IJQ A;  4LQY A;  4LR2 A;  3SZY A;  3WAX A;  1N2K A;  4ZG6 A;  1KHJ A;  3M8Y A;  3UN2 A;  2D1G A;  1ELZ A;  2GLQ A;  2W5X A;  3NKM A;  5KXA A;  5AJ9 A;  4FDJ A;  1ELY A;  3E2D A;  4GTW A;  2QZU A;  5DLW A;  3NKN A;  4KJG A;  4CXK A;  4TN0 A;  3IDD A;  2ZKT A;  4UPI A;  2VQR A;  2W5W A;  1P49 A;  4UPL A;  2W5Q A;  1HQA A;  1ANJ A;  3NVL A;  3IGY B;  2GSO A;  1EJJ A;  1AUK A;  1ZEB A;  3T02 A;  1ALH A;  3KD8 A;  2IUC A;  1ED9 A;  3M7V A;  1E33 P;  3SZZ A;  1ZED A;  4LR7 A;  3MK1 A;  4N7T A;  1KH9 A;  5EGH A;  4GTZ A;  3TG0 A;  2GA3 A;  1N2L A;  5LQQ A;  4CXS A;  4CYR A;  2XR9 A;  3NKR A;  3UO0 A;  2W5T A;  4LRA A;  1FSU A;  3UN5 A;  2W5S A;  1EI6 A;  3DYC A;  3WAY A;  3MK2 A;  1AJC A;  3WAV A;  4LRC A;  4UPK A;  2ANH A;  2W5R A;  4ZG7 A;  3LXQ A;  5DLV A;  4ZG9 A;  4LR9 A;  1URA A;  3T01 A;  1ZEF A;  5LRN A;  2GSU A;  3UNY A;  1ALJ A;  1K7H A;  2XRG A;  4MIV A;  1ALK A;  3WAW A;  2W5V A;  5LRM A;  1EQJ A;  4LRE A;  5INH A;  1ED8 A;  3BDF A;  4UOR A;  3BDG B;  1HJK A;  3BDG A;  4LRB A;  2W8S A;  2GSN A;  1E1Z P;  5L0K A;  3UN3 A;  1EW8 A;  2RH6 A;  3M8Z A;  4NWJ A;  5LIA A;  4LR8 A;  1Y7A A;  2W8D A;  4CXU A;  4QAX A;  5K4P A;  3TX0 A;  5DLT A;  4NWX A;  5L0B A;  1URB A;  1ANI A;  2IFY A;  4CYS A; 
#chains in the Genus database with same CATH homology
 2G9Y A;  4GTX A;  4KJD A;  3BDH A;  4UOO A;  1B8J A;  3ED4 A;  3MK0 A;  4YR1 A;  1EW9 A;  3M8W A;  1O99 A;  5IJS A;  3A52 A;  1Y6V A;  5GOV A;  4UOP A;  3NKP A;  2X98 A;  1AJB A;  3CMR A;  1KH5 A;  1KH4 A;  4LRF A;  3DPC A;  1SHQ A;  1KHN A;  4B56 A;  3TWZ A;  3WBH A;  4KAV A;  3OT9 A;  1E3C P;  3NKO A;  4KM4 A;  1AJD A;  4MY4 A;  4UPH A;  4FDI A;  1EW2 A;  4KAY A;  3Q3Q A;  1SHN A;  5GRR A;  1O98 A;  4ZGA A;  1ALI A;  5TJ3 A;  5C66 A;  1AJA A;  1ELX A;  1HDH A;  3T00 A;  5HRT A;  5L0E A;  1KHL A;  1KH7 A;  4GTY A;  2IUC B;  5EGE A;  1E2S P;  1KHK A;  4LRD A;  3B5Q A;  3IGZ B;  4MHX A;  3NKQ A;  5IJQ A;  4LQY A;  4LR2 A;  3SZY A;  3WAX A;  1N2K A;  4ZG6 A;  1KHJ A;  3M8Y A;  3UN2 A;  2D1G A;  1ELZ A;  2GLQ A;  2W5X A;  3NKM A;  5KXA A;  5AJ9 A;  4FDJ A;  1ELY A;  3E2D A;  4GTW A;  2QZU A;  5DLW A;  3NKN A;  4KJG A;  4CXK A;  4TN0 A;  3IDD A;  2ZKT A;  4UPI A;  2VQR A;  2W5W A;  1P49 A;  4UPL A;  2W5Q A;  1HQA A;  1ANJ A;  3NVL A;  3IGY B;  2GSO A;  1EJJ A;  1AUK A;  1ZEB A;  3T02 A;  1ALH A;  3KD8 A;  2IUC A;  1ED9 A;  3M7V A;  1E33 P;  3SZZ A;  1ZED A;  4LR7 A;  3MK1 A;  4N7T A;  1KH9 A;  5EGH A;  4GTZ A;  3TG0 A;  2GA3 A;  1N2L A;  5LQQ A;  4CXS A;  4CYR A;  2XR9 A;  3NKR A;  3UO0 A;  2W5T A;  4LRA A;  1FSU A;  3UN5 A;  2W5S A;  1EI6 A;  3DYC A;  3WAY A;  3MK2 A;  1AJC A;  3WAV A;  4LRC A;  4UPK A;  2ANH A;  2W5R A;  4ZG7 A;  3LXQ A;  5DLV A;  4ZG9 A;  4LR9 A;  1URA A;  3T01 A;  1ZEF A;  5LRN A;  2GSU A;  3UNY A;  1ALJ A;  1K7H A;  2XRG A;  4MIV A;  1ALK A;  3WAW A;  2W5V A;  5LRM A;  1EQJ A;  4LRE A;  5INH A;  1ED8 A;  3BDF A;  4UOR A;  3BDG B;  1HJK A;  3BDG A;  4LRB A;  2W8S A;  2GSN A;  1E1Z P;  5L0K A;  3UN3 A;  1EW8 A;  2RH6 A;  3M8Z A;  4NWJ A;  5LIA A;  4LR8 A;  1Y7A A;  2W8D A;  4CXU A;  4QAX A;  5K4P A;  3TX0 A;  5DLT A;  4NWX A;  5L0B A;  1URB A;  1ANI A;  2IFY A;  4CYS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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