2IUCA

Structure of alkaline phosphatase from the antarctic bacterium tab5
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
Knots found
sequence length
344
structure length
340
Chain Sequence
KTPKNVILLISDGAGLSQISSTFYFKEGTPNYTQFKNIGLIKTSSSREDVTDSASGATAFSCGIKTYNAAIGVADDSTAVKSIVEIAALNNIKTGVVATSSITHATPASFYAHALNRGLEEEIAMDMTESDLDFFAGGGLNYFTSRKDKKDVLAILKGNQFTINTTGLTDFSSIASNRKMGFLLADEAMPTMESGRGNFLSAATDLAIQFLSKDNSAFFIMSEGSQIDWGGHANNASYLISEINDFDDAIGTALAFAKKDGNTLVIVTSDHETGGFTLAAKKNKREYSDYTSIGPSFSTGGHSATLIPVFAYGPGSEEFIGIYENNEIFHKILKVTKWNQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Antarctic bacterium tab5
publication title Crystal Structure of Alkaline Phosphatase from the Antarctic Bacterium Tab5.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
total genus 133
structure length 340
sequence length 344
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2006-06-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2iucA00
3TG0A 3CMRA 5EGHA 2W5QA 2GSNA 1ALJA 5L0EA 5C66A 1ELYA 1HJKA 5AJ9A 4KM4A 3WAWA 4CYRA 1EQJA 3MK1A 4LREA 1SHNA 2ANHA 2W5VA 5EGEA 4LRFA 5TJ3A 4UOOA 3UNYA 5IJSA 1ALIA 3BDGB 1KHNA 1KHKA 1EI6A 3WAXA 3DPCA 3IDDA 4LR2A 4LRCA 1ALKA 1ELZA 4CXUA 4KJGA 3NKRA 1ANIA 5LIAA 2GLQA 3BDFA 3OT9A 3BDGA 3T01A 1KHJA 1O99A 1N2LA 2GSOA 2GSUA 4TN0A 3WAVA 3DYCA 5GRRA 1EW2A 1EW9A 1B8JA 4UOPA 1AJCA 4CXSA 5HRTA 5K4PA 2W5WA 1Y7AA 3WAYA 3BDHA 1ED9A 1E2SP 4KJDA 1ZEBA 1Y6VA 3TWZA 1ALHA 1N2KA 1URAA 2IUCB 4UORA 1E33P 2XRGA 3M8WA 1KHLA 1ZEDA 3WBHA 4KAVA 3T00A 4ZGAA 5KXAA 2VQRA 1KH9A 1HQAA 4ZG6A 2W5TA 4N7TA 5LRMA 3M7VA 4MIVA 4QAXA 3M8YA 4UPIA 1SHQA 3SZYA 5DLWA 3MK0A 1AJBA 2W8DA 2IUCA 1ZEFA 1EW8A 4GTYA 1AJAA 4YR1A 5GOVA 1ED8A 2IFYA 4CXKA 1AUKA 2X98A 4ZG9A 5LQQA 2G9YA 1AJDA 1ANJA 4GTWA 4LRDA 4FDJA 4GTZA 3B5QA 1KH5A 4MY4A 5IJQA 3ED4A 1E3CP 4UPLA 3UN3A 1KH4A 3NKQA 3NKPA 4LRAA 3UN5A 4LQYA 1HDHA 3SZZA 5L0BA 3NKMA 3KD8A 4FDIA 1KH7A 4ZG7A 5INHA 3UO0A 1K7HA 2W5XA 3LXQA 3IGYB 3TX0A 4LRBA 3A52A 3NVLA 3NKOA 4LR8A 4NWXA 5DLVA 5L0KA 4LR9A 3IGZB 2D1GA 2W5RA 2RH6A 5LRNA 1P49A 2GA3A 4KAYA 4LR7A 3UN2A 4MHXA 1ELXA 4CYSA 2W5SA 4UPHA 1EJJA 1O98A 3NKNA 3Q3QA 2QZUA 4NWJA 2XR9A 3MK2A 4UPKA 3M8ZA 4B56A 3E2DA 1URBA 2ZKTA 4GTXA 2W8SA 1E1ZP 5DLTA 3T02A 1FSUA
chains in the Genus database with same CATH superfamily
3TG0A 3CMRA 5EGHA 2W5QA 2GSNA 1ALJA 5L0EA 5C66A 1ELYA 1HJKA 5AJ9A 4KM4A 3WAWA 4CYRA 1EQJA 3MK1A 4LREA 1SHNA 2ANHA 2W5VA 5EGEA 4LRFA 5TJ3A 4UOOA 3UNYA 5IJSA 1ALIA 3BDGB 1KHNA 1KHKA 1EI6A 3WAXA 3DPCA 3IDDA 4LR2A 4LRCA 1ALKA 1ELZA 4CXUA 4KJGA 3NKRA 1ANIA 5LIAA 2GLQA 3BDFA 3OT9A 3BDGA 3T01A 1KHJA 1O99A 1N2LA 2GSOA 2GSUA 4TN0A 3WAVA 3DYCA 5GRRA 1EW2A 1EW9A 1B8JA 4UOPA 1AJCA 4CXSA 5HRTA 5K4PA 2W5WA 1Y7AA 3WAYA 3BDHA 1ED9A 1E2SP 4KJDA 1ZEBA 1Y6VA 3TWZA 1ALHA 1N2KA 1URAA 2IUCB 4UORA 1E33P 2XRGA 3M8WA 1KHLA 1ZEDA 3WBHA 4KAVA 3T00A 4ZGAA 5KXAA 2VQRA 1KH9A 1HQAA 4ZG6A 2W5TA 4N7TA 5LRMA 3M7VA 4MIVA 4QAXA 3M8YA 4UPIA 1SHQA 3SZYA 5DLWA 3MK0A 1AJBA 2W8DA 2IUCA 1ZEFA 1EW8A 4GTYA 1AJAA 4YR1A 5GOVA 1ED8A 2IFYA 4CXKA 1AUKA 2X98A 4ZG9A 5LQQA 2G9YA 1AJDA 1ANJA 4GTWA 4LRDA 4FDJA 4GTZA 3B5QA 1KH5A 4MY4A 5IJQA 3ED4A 1E3CP 4UPLA 3UN3A 1KH4A 3NKQA 3NKPA 4LRAA 3UN5A 4LQYA 1HDHA 3SZZA 5L0BA 3NKMA 3KD8A 4FDIA 1KH7A 4ZG7A 5INHA 3UO0A 1K7HA 2W5XA 3LXQA 3IGYB 3TX0A 4LRBA 3A52A 3NVLA 3NKOA 4LR8A 4NWXA 5DLVA 5L0KA 4LR9A 3IGZB 2D1GA 2W5RA 2RH6A 5LRNA 1P49A 2GA3A 4KAYA 4LR7A 3UN2A 4MHXA 1ELXA 4CYSA 2W5SA 4UPHA 1EJJA 1O98A 3NKNA 3Q3QA 2QZUA 4NWJA 2XR9A 3MK2A 4UPKA 3M8ZA 4B56A 3E2DA 1URBA 2ZKTA 4GTXA 2W8SA 1E1ZP 5DLTA 3T02A 1FSUA
chains in the Genus database with same CATH topology
3TG0A 3CMRA 5EGHA 2W5QA 2GSNA 1ALJA 5L0EA 5C66A 1ELYA 1HJKA 5AJ9A 4KM4A 3WAWA 4CYRA 1EQJA 3MK1A 4LREA 1SHNA 2ANHA 2W5VA 5EGEA 4LRFA 5TJ3A 4UOOA 3UNYA 5IJSA 1ALIA 3BDGB 1KHNA 1KHKA 1EI6A 3WAXA 3DPCA 3IDDA 4LR2A 4LRCA 1ALKA 1ELZA 4CXUA 4KJGA 3NKRA 1ANIA 5LIAA 2GLQA 3BDFA 3OT9A 3BDGA 3T01A 1KHJA 1O99A 1N2LA 2GSOA 2GSUA 4TN0A 3WAVA 3DYCA 5GRRA 1EW2A 1EW9A 1B8JA 4UOPA 1AJCA 4CXSA 5HRTA 5K4PA 2W5WA 1Y7AA 3WAYA 3BDHA 1ED9A 1E2SP 4KJDA 1ZEBA 1Y6VA 3TWZA 1ALHA 1N2KA 1URAA 2IUCB 4UORA 1E33P 2XRGA 3M8WA 1KHLA 1ZEDA 3WBHA 4KAVA 3T00A 4ZGAA 5KXAA 2VQRA 1KH9A 1HQAA 4ZG6A 2W5TA 4N7TA 5LRMA 3M7VA 4MIVA 4QAXA 3M8YA 4UPIA 1SHQA 3SZYA 5DLWA 3MK0A 1AJBA 2W8DA 2IUCA 1ZEFA 1EW8A 4GTYA 1AJAA 4YR1A 5GOVA 1ED8A 2IFYA 4CXKA 1AUKA 2X98A 4ZG9A 5LQQA 2G9YA 1AJDA 1ANJA 4GTWA 4LRDA 4FDJA 4GTZA 3B5QA 1KH5A 4MY4A 5IJQA 3ED4A 1E3CP 4UPLA 3UN3A 1KH4A 3NKQA 3NKPA 4LRAA 3UN5A 4LQYA 1HDHA 3SZZA 5L0BA 3NKMA 3KD8A 4FDIA 1KH7A 4ZG7A 5INHA 3UO0A 1K7HA 2W5XA 3LXQA 3IGYB 3TX0A 4LRBA 3A52A 3NVLA 3NKOA 4LR8A 4NWXA 5DLVA 5L0KA 4LR9A 3IGZB 2D1GA 2W5RA 2RH6A 5LRNA 1P49A 2GA3A 4KAYA 4LR7A 3UN2A 4MHXA 1ELXA 4CYSA 2W5SA 4UPHA 1EJJA 1O98A 3NKNA 3Q3QA 2QZUA 4NWJA 2XR9A 3MK2A 4UPKA 3M8ZA 4B56A 3E2DA 1URBA 2ZKTA 4GTXA 2W8SA 1E1ZP 5DLTA 3T02A 1FSUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TG0 A;  3CMR A;  5EGH A;  2W5Q A;  2GSN A;  1ALJ A;  5L0E A;  5C66 A;  1ELY A;  1HJK A;  5AJ9 A;  4KM4 A;  3WAW A;  4CYR A;  1EQJ A;  3MK1 A;  4LRE A;  1SHN A;  2ANH A;  2W5V A;  5EGE A;  4LRF A;  5TJ3 A;  4UOO A;  3UNY A;  5IJS A;  1ALI A;  3BDG B;  1KHN A;  1KHK A;  1EI6 A;  3WAX A;  3DPC A;  3IDD A;  4LR2 A;  4LRC A;  1ALK A;  1ELZ A;  4CXU A;  4KJG A;  3NKR A;  1ANI A;  5LIA A;  2GLQ A;  3BDF A;  3OT9 A;  3BDG A;  3T01 A;  1KHJ A;  1O99 A;  1N2L A;  2GSO A;  2GSU A;  4TN0 A;  3WAV A;  3DYC A;  5GRR A;  1EW2 A;  1EW9 A;  1B8J A;  4UOP A;  1AJC A;  4CXS A;  5HRT A;  5K4P A;  2W5W A;  1Y7A A;  3WAY A;  3BDH A;  1ED9 A;  1E2S P;  4KJD A;  1ZEB A;  1Y6V A;  3TWZ A;  1ALH A;  1N2K A;  1URA A;  2IUC B;  4UOR A;  1E33 P;  2XRG A;  3M8W A;  1KHL A;  1ZED A;  3WBH A;  4KAV A;  3T00 A;  4ZGA A;  5KXA A;  2VQR A;  1KH9 A;  1HQA A;  4ZG6 A;  2W5T A;  4N7T A;  5LRM A;  3M7V A;  4MIV A;  4QAX A;  3M8Y A;  4UPI A;  1SHQ A;  3SZY A;  5DLW A;  3MK0 A;  1AJB A;  2W8D A;  2IUC A;  1ZEF A;  1EW8 A;  4GTY A;  1AJA A;  4YR1 A;  5GOV A;  1ED8 A;  2IFY A;  4CXK A;  1AUK A;  2X98 A;  4ZG9 A;  5LQQ A;  2G9Y A;  1AJD A;  1ANJ A;  4GTW A;  4LRD A;  4FDJ A;  4GTZ A;  3B5Q A;  1KH5 A;  4MY4 A;  5IJQ A;  3ED4 A;  1E3C P;  4UPL A;  3UN3 A;  1KH4 A;  3NKQ A;  3NKP A;  4LRA A;  3UN5 A;  4LQY A;  1HDH A;  3SZZ A;  5L0B A;  3NKM A;  3KD8 A;  4FDI A;  1KH7 A;  4ZG7 A;  5INH A;  3UO0 A;  1K7H A;  2W5X A;  3LXQ A;  3IGY B;  3TX0 A;  4LRB A;  3A52 A;  3NVL A;  3NKO A;  4LR8 A;  4NWX A;  5DLV A;  5L0K A;  4LR9 A;  3IGZ B;  2D1G A;  2W5R A;  2RH6 A;  5LRN A;  1P49 A;  2GA3 A;  4KAY A;  4LR7 A;  3UN2 A;  4MHX A;  1ELX A;  4CYS A;  2W5S A;  4UPH A;  1EJJ A;  1O98 A;  3NKN A;  3Q3Q A;  2QZU A;  4NWJ A;  2XR9 A;  3MK2 A;  4UPK A;  3M8Z A;  4B56 A;  3E2D A;  1URB A;  2ZKT A;  4GTX A;  2W8S A;  1E1Z P;  5DLT A;  3T02 A;  1FSU A; 
#chains in the Genus database with same CATH topology
 3TG0 A;  3CMR A;  5EGH A;  2W5Q A;  2GSN A;  1ALJ A;  5L0E A;  5C66 A;  1ELY A;  1HJK A;  5AJ9 A;  4KM4 A;  3WAW A;  4CYR A;  1EQJ A;  3MK1 A;  4LRE A;  1SHN A;  2ANH A;  2W5V A;  5EGE A;  4LRF A;  5TJ3 A;  4UOO A;  3UNY A;  5IJS A;  1ALI A;  3BDG B;  1KHN A;  1KHK A;  1EI6 A;  3WAX A;  3DPC A;  3IDD A;  4LR2 A;  4LRC A;  1ALK A;  1ELZ A;  4CXU A;  4KJG A;  3NKR A;  1ANI A;  5LIA A;  2GLQ A;  3BDF A;  3OT9 A;  3BDG A;  3T01 A;  1KHJ A;  1O99 A;  1N2L A;  2GSO A;  2GSU A;  4TN0 A;  3WAV A;  3DYC A;  5GRR A;  1EW2 A;  1EW9 A;  1B8J A;  4UOP A;  1AJC A;  4CXS A;  5HRT A;  5K4P A;  2W5W A;  1Y7A A;  3WAY A;  3BDH A;  1ED9 A;  1E2S P;  4KJD A;  1ZEB A;  1Y6V A;  3TWZ A;  1ALH A;  1N2K A;  1URA A;  2IUC B;  4UOR A;  1E33 P;  2XRG A;  3M8W A;  1KHL A;  1ZED A;  3WBH A;  4KAV A;  3T00 A;  4ZGA A;  5KXA A;  2VQR A;  1KH9 A;  1HQA A;  4ZG6 A;  2W5T A;  4N7T A;  5LRM A;  3M7V A;  4MIV A;  4QAX A;  3M8Y A;  4UPI A;  1SHQ A;  3SZY A;  5DLW A;  3MK0 A;  1AJB A;  2W8D A;  2IUC A;  1ZEF A;  1EW8 A;  4GTY A;  1AJA A;  4YR1 A;  5GOV A;  1ED8 A;  2IFY A;  4CXK A;  1AUK A;  2X98 A;  4ZG9 A;  5LQQ A;  2G9Y A;  1AJD A;  1ANJ A;  4GTW A;  4LRD A;  4FDJ A;  4GTZ A;  3B5Q A;  1KH5 A;  4MY4 A;  5IJQ A;  3ED4 A;  1E3C P;  4UPL A;  3UN3 A;  1KH4 A;  3NKQ A;  3NKP A;  4LRA A;  3UN5 A;  4LQY A;  1HDH A;  3SZZ A;  5L0B A;  3NKM A;  3KD8 A;  4FDI A;  1KH7 A;  4ZG7 A;  5INH A;  3UO0 A;  1K7H A;  2W5X A;  3LXQ A;  3IGY B;  3TX0 A;  4LRB A;  3A52 A;  3NVL A;  3NKO A;  4LR8 A;  4NWX A;  5DLV A;  5L0K A;  4LR9 A;  3IGZ B;  2D1G A;  2W5R A;  2RH6 A;  5LRN A;  1P49 A;  2GA3 A;  4KAY A;  4LR7 A;  3UN2 A;  4MHX A;  1ELX A;  4CYS A;  2W5S A;  4UPH A;  1EJJ A;  1O98 A;  3NKN A;  3Q3Q A;  2QZU A;  4NWJ A;  2XR9 A;  3MK2 A;  4UPK A;  3M8Z A;  4B56 A;  3E2D A;  1URB A;  2ZKT A;  4GTX A;  2W8S A;  1E1Z P;  5DLT A;  3T02 A;  1FSU A; 
#chains in the Genus database with same CATH homology
 3TG0 A;  3CMR A;  5EGH A;  2W5Q A;  2GSN A;  1ALJ A;  5L0E A;  5C66 A;  1ELY A;  1HJK A;  5AJ9 A;  4KM4 A;  3WAW A;  4CYR A;  1EQJ A;  3MK1 A;  4LRE A;  1SHN A;  2ANH A;  2W5V A;  5EGE A;  4LRF A;  5TJ3 A;  4UOO A;  3UNY A;  5IJS A;  1ALI A;  3BDG B;  1KHN A;  1KHK A;  1EI6 A;  3WAX A;  3DPC A;  3IDD A;  4LR2 A;  4LRC A;  1ALK A;  1ELZ A;  4CXU A;  4KJG A;  3NKR A;  1ANI A;  5LIA A;  2GLQ A;  3BDF A;  3OT9 A;  3BDG A;  3T01 A;  1KHJ A;  1O99 A;  1N2L A;  2GSO A;  2GSU A;  4TN0 A;  3WAV A;  3DYC A;  5GRR A;  1EW2 A;  1EW9 A;  1B8J A;  4UOP A;  1AJC A;  4CXS A;  5HRT A;  5K4P A;  2W5W A;  1Y7A A;  3WAY A;  3BDH A;  1ED9 A;  1E2S P;  4KJD A;  1ZEB A;  1Y6V A;  3TWZ A;  1ALH A;  1N2K A;  1URA A;  2IUC B;  4UOR A;  1E33 P;  2XRG A;  3M8W A;  1KHL A;  1ZED A;  3WBH A;  4KAV A;  3T00 A;  4ZGA A;  5KXA A;  2VQR A;  1KH9 A;  1HQA A;  4ZG6 A;  2W5T A;  4N7T A;  5LRM A;  3M7V A;  4MIV A;  4QAX A;  3M8Y A;  4UPI A;  1SHQ A;  3SZY A;  5DLW A;  3MK0 A;  1AJB A;  2W8D A;  2IUC A;  1ZEF A;  1EW8 A;  4GTY A;  1AJA A;  4YR1 A;  5GOV A;  1ED8 A;  2IFY A;  4CXK A;  1AUK A;  2X98 A;  4ZG9 A;  5LQQ A;  2G9Y A;  1AJD A;  1ANJ A;  4GTW A;  4LRD A;  4FDJ A;  4GTZ A;  3B5Q A;  1KH5 A;  4MY4 A;  5IJQ A;  3ED4 A;  1E3C P;  4UPL A;  3UN3 A;  1KH4 A;  3NKQ A;  3NKP A;  4LRA A;  3UN5 A;  4LQY A;  1HDH A;  3SZZ A;  5L0B A;  3NKM A;  3KD8 A;  4FDI A;  1KH7 A;  4ZG7 A;  5INH A;  3UO0 A;  1K7H A;  2W5X A;  3LXQ A;  3IGY B;  3TX0 A;  4LRB A;  3A52 A;  3NVL A;  3NKO A;  4LR8 A;  4NWX A;  5DLV A;  5L0K A;  4LR9 A;  3IGZ B;  2D1G A;  2W5R A;  2RH6 A;  5LRN A;  1P49 A;  2GA3 A;  4KAY A;  4LR7 A;  3UN2 A;  4MHX A;  1ELX A;  4CYS A;  2W5S A;  4UPH A;  1EJJ A;  1O98 A;  3NKN A;  3Q3Q A;  2QZU A;  4NWJ A;  2XR9 A;  3MK2 A;  4UPK A;  3M8Z A;  4B56 A;  3E2D A;  1URB A;  2ZKT A;  4GTX A;  2W8S A;  1E1Z P;  5DLT A;  3T02 A;  1FSU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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