2IWVA

Structure of the monomeric outer membrane porin ompg in the open and closed conformation
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
277
structure length
277
Chain Sequence
NDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the Monomeric Outer-Membrane Porin Ompg in the Open and Closed Conformation.
pubmed doi rcsb
molecule keywords OUTER MEMBRANE PROTEIN G
source organism Escherichia coli
molecule tags Ion channel
total genus 72
structure length 277
sequence length 277
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2006-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09381 Porin_OmpG Outer membrane protein G (OmpG)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.40 Mainly Beta Beta Barrel Porin monomeric porin ompg 2iwvA00
4CTDA 2JQYA 2X9KA 2F1CX 2IWVA 2WJRA 4FQEA 2IWWA 2WJQA 2WVPA 4PR7A
chains in the Genus database with same CATH superfamily
5EE2A 4GCPA 2N2MA 2QTKA 3NJTA 2KDYA 3QRCA 3AA0A 2LHFA 3AAAB 2R8AA 2O4VA 1GFOA 4GCSA 4LSEA 2KC0A 5D5DA 4UB6O 2JMMA 5ADXK 4O4UA 4C4VA 1S5LO 2Y7SA 5DL8A 1T16A 3DWOX 1MM4A 3WI4A 3LK41 5B5EO 2K0LA 1ORMA 1HXXA 3LK3B 1GFPA 4FZNA 3VE2A 4G75A 1BXWA 2KXPB 3FYXA 3A0BO 2JQYA 2X9KA 2J1NA 3DA4A 4AYDC 7PRNA 1IZNA 4GCQA 4K3CA 4O3XB 4FQEA 4N58A 4AKRA 2Y0HA 1T1LA 1PRNA 3VZUX 3PF1A 4RL9A 4C69X 3DWNA 3PGRA 3K19A 2R89A 2XE3A 1OSMA 4AUIA 3PGUA 4CTDA 2F1CX 2PRNA 2R88A 1ZHTA 3POQA 5H2FO 5E79O 1GFNA 4LSFA 3AA0B 4G76A 2KZ7A 2WJQA 2R4PA 4RJWA 3UAQA 5B66O 3QRAA 4N59A 1HXTA 2ERVA 5JDPA 1MPFA 5DL6A 1ZHXA 1QJPA 4O3YA 3AA7B 4C4VB 3KZIO 3AA7A 5DL5A 3C5OA 3PQSA 3NSGA 4PJ0O 4IL6O 1H6S1 3PQUA 1PHOA 4N75A 5GTHO 2FGRA 3VY9X 4D64A 3AAEB 4QQ1A 3AAEA 1MM5A 1HXUA 2YNKA 3WI5A 3SY9A 2F1TA 5GV0A 1GFMA 3HOLA 1IZNB 4N74A 6PRNA 4XNKA 3AA1A 2GE4A 3JTYA 4AKRB 4E1SA 5G26A 2ZFGA 1G90A 2Y0LA 4FZMA 3SZVA 2Y0KA 2XG6A 3DA3A 4AKMA 4BUMX 2WJRA 3HOEA 3TZGA 2XTQA 4FRTA 4FESA 4O49A 4AYEC 2X27X 2Y2XA 4XNLA 2KZ7B 4FUVA 3LK2A 4UB8O 5DL7A 3WU2O 2ODJA 5FVNA 1QJ9A 4Z3TA 3BRZA 3SZDA 2OMFA 2AXTO 3VY8X 5AFUL 5PRNA 4FSOA 1ZHZA 3UPGA 3EMNX 3UU2A 2K4TA 3RBHA 3HW9A 3O0EA 1ZHYA 4D65A 1P4TA 2R4LA 3G7GA 5G3AA 2PORA 3PGSA 3T0SA 1Q9FA 3PORA 2XE2A 4C00A 1QJ8A 2MNHA 2F1VA 2W81C 2YPVA 1OPFA 4FOZA 3AA6A 4FSPA 4O3ZA 4D5UA 1BT9A 4FMSA 4RLCA 8PRNA 2M07A 3AA1B 3A2SX 4K3BA 5KAIO 3SYBA 5TISO 3T20A 2M06A 4RLBA 4FRXA 2N2LA 4LSHA 3SYSA 3A0HO 3V8UA 5IYUA 2MHLA 3KVDD 4AYMC 4KR4A 1Q9GA 3JCUO 4AYNA 4LSIA 2XE1A 2FGQX 3LK42 5ADXL 4GHBA 4U9CA 3AAAA 3LK2B 3PRNA 4FT6A 4PR7A 5GTIO 3GP6A 5T5FA 3T24A 2IWWA 2J4UP 4KR8A 4KRAA 3BS0A 4O3WA 2R4NA 3VZWX 4AZLA 4PUXA 2W80C 1YS5A 1BH3A 2LFUA 2XMXA 3LK3A 5AFUK 4B61A 2XE5A 4AYID 3BRYA 2XTRA 2KXPA 2WVPA 3HWBA 1ZHWA 4FZLA 3DZMA 4JCHA 5G39A 5KAFO 3VE1A 4JFBA 4E1TA 3VZTX 3AA6B 5G38A 2IWVA 4GF4A 2ZLDA 4F4BA 3SY7A 1E54A 1GFQA 1THQA 3POXA 4AFKA 4RJXA 3POUA 2R4OA 4O4XA
chains in the Genus database with same CATH topology
4CTDA 2JQYA 2X9KA 2F1CX 2IWVA 2WJRA 4FQEA 2IWWA 2WJQA 2WVPA 4PR7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CTD A;  2JQY A;  2X9K A;  2F1C X;  2IWV A;  2WJR A;  4FQE A;  2IWW A;  2WJQ A;  2WVP A;  4PR7 A; 
#chains in the Genus database with same CATH topology
 5EE2 A;  4GCP A;  2N2M A;  2QTK A;  3NJT A;  2KDY A;  3QRC A;  3AA0 A;  2LHF A;  3AAA B;  2R8A A;  2O4V A;  1GFO A;  4GCS A;  4LSE A;  2KC0 A;  5D5D A;  4UB6 O;  2JMM A;  5ADX K;  4O4U A;  4C4V A;  1S5L O;  2Y7S A;  5DL8 A;  1T16 A;  3DWO X;  1MM4 A;  3WI4 A;  3LK4 1;  5B5E O;  2K0L A;  1ORM A;  1HXX A;  3LK3 B;  1GFP A;  4FZN A;  3VE2 A;  4G75 A;  1BXW A;  2KXP B;  3FYX A;  3A0B O;  2JQY A;  2X9K A;  2J1N A;  3DA4 A;  4AYD C;  7PRN A;  1IZN A;  4GCQ A;  4K3C A;  4O3X B;  4FQE A;  4N58 A;  4AKR A;  2Y0H A;  1T1L A;  1PRN A;  3VZU X;  3PF1 A;  4RL9 A;  4C69 X;  3DWN A;  3PGR A;  3K19 A;  2R89 A;  2XE3 A;  1OSM A;  4AUI A;  3PGU A;  4CTD A;  2F1C X;  2PRN A;  2R88 A;  1ZHT A;  3POQ A;  5H2F O;  5E79 O;  1GFN A;  4LSF A;  3AA0 B;  4G76 A;  2KZ7 A;  2WJQ A;  2R4P A;  4RJW A;  3UAQ A;  5B66 O;  3QRA A;  4N59 A;  1HXT A;  2ERV A;  5JDP A;  1MPF A;  5DL6 A;  1ZHX A;  1QJP A;  4O3Y A;  3AA7 B;  4C4V B;  3KZI O;  3AA7 A;  5DL5 A;  3C5O A;  3PQS A;  3NSG A;  4PJ0 O;  4IL6 O;  1H6S 1;  3PQU A;  1PHO A;  4N75 A;  5GTH O;  2FGR A;  3VY9 X;  4D64 A;  3AAE B;  4QQ1 A;  3AAE A;  1MM5 A;  1HXU A;  2YNK A;  3WI5 A;  3SY9 A;  2F1T A;  5GV0 A;  1GFM A;  3HOL A;  1IZN B;  4N74 A;  6PRN A;  4XNK A;  3AA1 A;  2GE4 A;  3JTY A;  4AKR B;  4E1S A;  5G26 A;  2ZFG A;  1G90 A;  2Y0L A;  4FZM A;  3SZV A;  2Y0K A;  2XG6 A;  3DA3 A;  4AKM A;  4BUM X;  2WJR A;  3HOE A;  3TZG A;  2XTQ A;  4FRT A;  4FES A;  4O49 A;  4AYE C;  2X27 X;  2Y2X A;  4XNL A;  2KZ7 B;  4FUV A;  3LK2 A;  4UB8 O;  5DL7 A;  3WU2 O;  2ODJ A;  5FVN A;  1QJ9 A;  4Z3T A;  3BRZ A;  3SZD A;  2OMF A;  2AXT O;  3VY8 X;  5AFU L;  5PRN A;  4FSO A;  1ZHZ A;  3UPG A;  3EMN X;  3UU2 A;  2K4T A;  3RBH A;  3HW9 A;  3O0E A;  1ZHY A;  4D65 A;  1P4T A;  2R4L A;  3G7G A;  5G3A A;  2POR A;  3PGS A;  3T0S A;  1Q9F A;  3POR A;  2XE2 A;  4C00 A;  1QJ8 A;  2MNH A;  2F1V A;  2W81 C;  2YPV A;  1OPF A;  4FOZ A;  3AA6 A;  4FSP A;  4O3Z A;  4D5U A;  1BT9 A;  4FMS A;  4RLC A;  8PRN A;  2M07 A;  3AA1 B;  3A2S X;  4K3B A;  5KAI O;  3SYB A;  5TIS O;  3T20 A;  2M06 A;  4RLB A;  4FRX A;  2N2L A;  4LSH A;  3SYS A;  3A0H O;  3V8U A;  5IYU A;  2MHL A;  3KVD D;  4AYM C;  4KR4 A;  1Q9G A;  3JCU O;  4AYN A;  4LSI A;  2XE1 A;  2FGQ X;  3LK4 2;  5ADX L;  4GHB A;  4U9C A;  3AAA A;  3LK2 B;  3PRN A;  4FT6 A;  4PR7 A;  5GTI O;  3GP6 A;  5T5F A;  3T24 A;  2IWW A;  2J4U P;  4KR8 A;  4KRA A;  3BS0 A;  4O3W A;  2R4N A;  3VZW X;  4AZL A;  4PUX A;  2W80 C;  1YS5 A;  1BH3 A;  2LFU A;  2XMX A;  3LK3 A;  5AFU K;  4B61 A;  2XE5 A;  4AYI D;  3BRY A;  2XTR A;  2KXP A;  2WVP A;  3HWB A;  1ZHW A;  4FZL A;  3DZM A;  4JCH A;  5G39 A;  5KAF O;  3VE1 A;  4JFB A;  4E1T A;  3VZT X;  3AA6 B;  5G38 A;  2IWV A;  4GF4 A;  2ZLD A;  4F4B A;  3SY7 A;  1E54 A;  1GFQ A;  1THQ A;  3POX A;  4AFK A;  4RJX A;  3POU A;  2R4O A;  4O4X A; 
#chains in the Genus database with same CATH homology
 4CTD A;  2JQY A;  2X9K A;  2F1C X;  2IWV A;  2WJR A;  4FQE A;  2IWW A;  2WJQ A;  2WVP A;  4PR7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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