2IWVA

Structure of the monomeric outer membrane porin ompg in the open and closed conformation
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
277
structure length
277
Chain Sequence
NDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ion channel
source organism Escherichia coli
publication title Structure of the Monomeric Outer-Membrane Porin Ompg in the Open and Closed Conformation.
pubmed doi rcsb
molecule keywords OUTER MEMBRANE PROTEIN G
total genus 72
structure length 277
sequence length 277
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2006-07-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09381 Porin_OmpG Outer membrane protein G (OmpG)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.40 Mainly Beta Beta Barrel Porin monomeric porin ompg 2iwvA00
2JQYA 2WJQA 2IWWA 4FQEA 2WVPA 4PR7A 2IWVA 4CTDA 2X9KA 2F1CX 2WJRA
chains in the Genus database with same CATH superfamily
3PRNA 4FSPA 4GF4A 4KR4A 3VE1A 1GFOA 4O3YA 3SZDA 4F4BA 4G75A 4K3CA 1QJ8A 4B61A 2KDYA 2W81C 2F1CX 4AKRA 3AA7A 4FMSA 4AFKA 2QTKA 3VZTX 5JDPA 2WJQA 4C00A 4AKMA 5ADXL 2PRNA 3POQA 2KC0A 5E79O 3PGUA 4GCPA 2IWVA 3AAEA 3JTYA 5G3AA 4D65A 3PGRA 2LFUA 4LSFA 4AYEC 3AA6A 3BS0A 3V8UA 4GCQA 5GV0A 2XE2A 2Y0HA 5AFUK 3LK2B 3POXA 2R88A 3AA1A 4KRAA 1T16A 3AA0A 2R4NA 3T0SA 2Y7SA 3DWNA 3HOEA 1THQA 1H6S1 4O3WA 4C4VA 3POUA 4PJ0O 3GP6A 3HW9A 4GCSA 4O49A 1P4TA 1QJ9A 2YNKA 2R4PA 3HWBA 3AAAA 1OPFA 4GHBA 4O3XB 1ZHXA 2LHFA 3AA7B 4AKRB 4U9CA 3PF1A 4CTDA 3PQSA 1E54A 3UPGA 3BRZA 4Z3TA 2XE5A 4JFBA 3SY7A 3AAEB 1HXTA 2KZ7A 4FQEA 2XTQA 4FT6A 2XG6A 1BH3A 3LK42 5KAIO 2K0LA 3DA3A 4FUVA 1T1LA 3AA6B 2W80C 3SZVA 1Q9FA 3JCUO 7PRNA 4C69X 4UB6O 3QRAA 3DWOX 3UAQA 4K3BA 3AA1B 4RJXA 2O4VA 5IYUA 3AA0B 1MPFA 1GFMA 3FYXA 4LSHA 3RBHA 4O4UA 5FVNA 3HOLA 3PGSA 3SYBA 1IZNA 1GFQA 1ORMA 2XE3A 4C4VB 5DL8A 4KR8A 2XMXA 2J4UP 4PR7A 4BUMX 3LK3A 4RLBA 3BRYA 3A2SX 5PRNA 2F1TA 3AAAB 4FZLA 4D64A 3VY9X 1HXXA 4AYDC 2IWWA 5H2FO 2R89A 3KVDD 3VZUX 2JMMA 1BXWA 3VZWX 2ERVA 2MHLA 3WI5A 6PRNA 2K4TA 2AXTO 2ZFGA 3G7GA 2KZ7B 3TZGA 4N74A 5AFUL 2Y2XA 3NJTA 3SY9A 4AYMC 4IL6O 5G26A 4AZLA 1Q9GA 3A0BO 1BT9A 4LSIA 2GE4A 2N2LA 4N59A 1YS5A 3K19A 2MNHA 1ZHTA 5ADXK 2XTRA 3A0HO 4FESA 4UB8O 4RLCA 1S5LO 5GTHO 2ZLDA 1GFPA 1IZNB 2WJRA 4FSOA 4O4XA 4O3ZA 3WI4A 5G38A 1QJPA 2R8AA 3UU2A 3VY8X 5DL7A 2Y0LA 2Y0KA 3LK3B 1ZHWA 2ODJA 3O0EA 4FZNA 4N58A 3NSGA 4N75A 4RL9A 4AUIA 3PQUA 4LSEA 2N2MA 2R4OA 3SYSA 2KXPA 1G90A 2YPVA 2M07A 4AYID 1OSMA 2FGQX 4FRTA 2WVPA 5DL6A 4QQ1A 3DZMA 2X27X 4FOZA 4FRXA 1MM4A 3QRCA 4PUXA 3VE2A 3PORA 4E1SA 4AYNA 3DA4A 1GFNA 2J1NA 4D5UA 5KAFO 5B66O 2X9KA 5GTIO 1ZHYA 3T24A 1PHOA 2FGRA 4XNLA 2R4LA 5D5DA 3C5OA 2JQYA 4XNKA 3KZIO 2OMFA 3LK41 4FZMA 4G76A 5EE2A 2M06A 5B5EO 3WU2O 5DL5A 3EMNX 5TISO 2XE1A 4RJWA 3LK2A 1HXUA 5G39A 4JCHA 8PRNA 2PORA 1PRNA 3T20A 2F1VA 5T5FA 1MM5A 4E1TA 2KXPB 1ZHZA
chains in the Genus database with same CATH topology
2JQYA 2WJQA 2IWWA 4FQEA 2WVPA 4PR7A 2IWVA 4CTDA 2X9KA 2F1CX 2WJRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JQY A;  2WJQ A;  2IWW A;  4FQE A;  2WVP A;  4PR7 A;  2IWV A;  4CTD A;  2X9K A;  2F1C X;  2WJR A; 
#chains in the Genus database with same CATH topology
 3PRN A;  4FSP A;  4GF4 A;  4KR4 A;  3VE1 A;  1GFO A;  4O3Y A;  3SZD A;  4F4B A;  4G75 A;  4K3C A;  1QJ8 A;  4B61 A;  2KDY A;  2W81 C;  2F1C X;  4AKR A;  3AA7 A;  4FMS A;  4AFK A;  2QTK A;  3VZT X;  5JDP A;  2WJQ A;  4C00 A;  4AKM A;  5ADX L;  2PRN A;  3POQ A;  2KC0 A;  5E79 O;  3PGU A;  4GCP A;  2IWV A;  3AAE A;  3JTY A;  5G3A A;  4D65 A;  3PGR A;  2LFU A;  4LSF A;  4AYE C;  3AA6 A;  3BS0 A;  3V8U A;  4GCQ A;  5GV0 A;  2XE2 A;  2Y0H A;  5AFU K;  3LK2 B;  3POX A;  2R88 A;  3AA1 A;  4KRA A;  1T16 A;  3AA0 A;  2R4N A;  3T0S A;  2Y7S A;  3DWN A;  3HOE A;  1THQ A;  1H6S 1;  4O3W A;  4C4V A;  3POU A;  4PJ0 O;  3GP6 A;  3HW9 A;  4GCS A;  4O49 A;  1P4T A;  1QJ9 A;  2YNK A;  2R4P A;  3HWB A;  3AAA A;  1OPF A;  4GHB A;  4O3X B;  1ZHX A;  2LHF A;  3AA7 B;  4AKR B;  4U9C A;  3PF1 A;  4CTD A;  3PQS A;  1E54 A;  3UPG A;  3BRZ A;  4Z3T A;  2XE5 A;  4JFB A;  3SY7 A;  3AAE B;  1HXT A;  2KZ7 A;  4FQE A;  2XTQ A;  4FT6 A;  2XG6 A;  1BH3 A;  3LK4 2;  5KAI O;  2K0L A;  3DA3 A;  4FUV A;  1T1L A;  3AA6 B;  2W80 C;  3SZV A;  1Q9F A;  3JCU O;  7PRN A;  4C69 X;  4UB6 O;  3QRA A;  3DWO X;  3UAQ A;  4K3B A;  3AA1 B;  4RJX A;  2O4V A;  5IYU A;  3AA0 B;  1MPF A;  1GFM A;  3FYX A;  4LSH A;  3RBH A;  4O4U A;  5FVN A;  3HOL A;  3PGS A;  3SYB A;  1IZN A;  1GFQ A;  1ORM A;  2XE3 A;  4C4V B;  5DL8 A;  4KR8 A;  2XMX A;  2J4U P;  4PR7 A;  4BUM X;  3LK3 A;  4RLB A;  3BRY A;  3A2S X;  5PRN A;  2F1T A;  3AAA B;  4FZL A;  4D64 A;  3VY9 X;  1HXX A;  4AYD C;  2IWW A;  5H2F O;  2R89 A;  3KVD D;  3VZU X;  2JMM A;  1BXW A;  3VZW X;  2ERV A;  2MHL A;  3WI5 A;  6PRN A;  2K4T A;  2AXT O;  2ZFG A;  3G7G A;  2KZ7 B;  3TZG A;  4N74 A;  5AFU L;  2Y2X A;  3NJT A;  3SY9 A;  4AYM C;  4IL6 O;  5G26 A;  4AZL A;  1Q9G A;  3A0B O;  1BT9 A;  4LSI A;  2GE4 A;  2N2L A;  4N59 A;  1YS5 A;  3K19 A;  2MNH A;  1ZHT A;  5ADX K;  2XTR A;  3A0H O;  4FES A;  4UB8 O;  4RLC A;  1S5L O;  5GTH O;  2ZLD A;  1GFP A;  1IZN B;  2WJR A;  4FSO A;  4O4X A;  4O3Z A;  3WI4 A;  5G38 A;  1QJP A;  2R8A A;  3UU2 A;  3VY8 X;  5DL7 A;  2Y0L A;  2Y0K A;  3LK3 B;  1ZHW A;  2ODJ A;  3O0E A;  4FZN A;  4N58 A;  3NSG A;  4N75 A;  4RL9 A;  4AUI A;  3PQU A;  4LSE A;  2N2M A;  2R4O A;  3SYS A;  2KXP A;  1G90 A;  2YPV A;  2M07 A;  4AYI D;  1OSM A;  2FGQ X;  4FRT A;  2WVP A;  5DL6 A;  4QQ1 A;  3DZM A;  2X27 X;  4FOZ A;  4FRX A;  1MM4 A;  3QRC A;  4PUX A;  3VE2 A;  3POR A;  4E1S A;  4AYN A;  3DA4 A;  1GFN A;  2J1N A;  4D5U A;  5KAF O;  5B66 O;  2X9K A;  5GTI O;  1ZHY A;  3T24 A;  1PHO A;  2FGR A;  4XNL A;  2R4L A;  5D5D A;  3C5O A;  2JQY A;  4XNK A;  3KZI O;  2OMF A;  3LK4 1;  4FZM A;  4G76 A;  5EE2 A;  2M06 A;  5B5E O;  3WU2 O;  5DL5 A;  3EMN X;  5TIS O;  2XE1 A;  4RJW A;  3LK2 A;  1HXU A;  5G39 A;  4JCH A;  8PRN A;  2POR A;  1PRN A;  3T20 A;  2F1V A;  5T5F A;  1MM5 A;  4E1T A;  2KXP B;  1ZHZ A; 
#chains in the Genus database with same CATH homology
 2JQY A;  2WJQ A;  2IWW A;  4FQE A;  2WVP A;  4PR7 A;  2IWV A;  4CTD A;  2X9K A;  2F1C X;  2WJR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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