2IWWA

Structure of the monomeric outer membrane porin ompg in the open and closed conformation
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
277
structure length
277
Chain Sequence
NDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ion channel
molecule keywords OUTER MEMBRANE PROTEIN G
publication title Structure of the Monomeric Outer-Membrane Porin Ompg in the Open and Closed Conformation.
pubmed doi rcsb
source organism Escherichia coli
total genus 60
structure length 277
sequence length 277
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09381 Porin_OmpG Outer membrane protein G (OmpG)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.40 Mainly Beta Beta Barrel Porin monomeric porin ompg 2iwwA00
2JQYA 2F1CX 4CTDA 2IWWA 2WJQA 4PR7A 2WVPA 2X9KA 2WJRA 4FQEA 2IWVA
chains in the Genus database with same CATH superfamily
2R4OA 4AYDC 1BT9A 2ZLDA 4AYNA 4XNLA 2M06A 4D65A 4K3CA 2AXTO 3FYXA 1G90A 2R4PA 5H2FO 5ADXK 2N2LA 3AA7B 2R8AA 4KR8A 5TISO 3T24A 3VY9X 4CTDA 1ZHZA 4FZMA 3SZVA 3AA0A 3NJTA 1MPFA 2F1VA 4FOZA 2WVPA 2R4NA 4RLBA 4FSPA 2XTQA 2KXPB 3A0BO 1HXTA 5B5EO 3JTYA 5DL8A 3SY7A 3UAQA 4AZLA 3T20A 4O3ZA 4C69X 3DA4A 1IZNB 4GHBA 3POUA 4O3XB 3AAAB 3DZMA 2WJRA 3SY9A 2X27X 5AFUL 2IWVA 2MHLA 3UU2A 5E79O 2XE1A 4O3YA 1T1LA 2WJQA 1H6S1 1ZHWA 1HXXA 4O4XA 5G39A 5JDPA 3QRCA 4F4BA 3POXA 3LK41 3VE1A 1ZHYA 3LK3A 4AYID 1OSMA 1GFNA 3T0SA 2Y0LA 4LSFA 2MNHA 3KVDD 2W80C 2M07A 3A0HO 1Q9GA 4LSEA 4N74A 4PJ0O 4AKMA 1BXWA 2XMXA 3BS0A 3C5OA 2R4LA 3AAEA 1MM4A 2QTKA 1QJPA 3WI5A 2OMFA 3A2SX 1HXUA 2JMMA 3SZDA 4C00A 3UPGA 4AUIA 3LK2A 4RL9A 5D5DA 1ZHXA 2Y0KA 2KDYA 3POQA 4O3WA 5KAFO 3WI4A 4C4VB 4D5UA 2LFUA 3AA0B 3QRAA 2XG6A 4QQ1A 5G38A 1T16A 5DL6A 1THQA 2Y0HA 2K0LA 5DL5A 3PQUA 4RJXA 7PRNA 5B66O 2GE4A 4N75A 5FVNA 2KC0A 1QJ8A 4U9CA 3SYSA 3AA1A 4XNKA 1BH3A 4FZNA 4K3BA 4D64A 5AFUK 4JFBA 4BUMX 4GCSA 4Z3TA 3PF1A 4B61A 2XTRA 4UB8O 3AA6A 2LHFA 5PRNA 3PRNA 2ZFGA 3PQSA 4GCPA 3LK3B 4FSOA 2F1CX 4FRXA 3RBHA 3VE2A 4GCQA 2ERVA 3PORA 4KR4A 1GFPA 3PGRA 4FRTA 5EE2A 1GFOA 2KZ7A 3AAEB 2N2MA 4FZLA 4AKRA 2K4TA 1P4TA 4AFKA 1S5LO 3LK42 2IWWA 1Q9FA 2X9KA 2PORA 2R89A 4FQEA 3EMNX 3LK2B 3HWBA 2JQYA 2XE3A 4FMSA 2FGQX 4LSHA 3V8UA 3DWNA 3O0EA 2F1TA 6PRNA 5IYUA 2O4VA 2YPVA 3JCUO 4E1TA 4N59A 2PRNA 4JCHA 4PUXA 4IL6O 5ADXL 4O4UA 1PRNA 2XE5A 4G76A 1MM5A 4LSIA 3HW9A 3NSGA 4FESA 3AA7A 4FUVA 2J1NA 1ORMA 3TZGA 5DL7A 3SYBA 4GF4A 4PR7A 3AA1B 5GTIO 3VY8X 3VZUX 1OPFA 1ZHTA 4RJWA 4C4VA 4FT6A 2KXPA 3KZIO 4KRAA 4AYMC 1YS5A 2J4UP 5G26A 3AA6B 3VZWX 1E54A 4RLCA 4AYEC 1IZNA 1GFQA 3BRZA 2W81C 2YNKA 3AAAA 1GFMA 3G7GA 3HOLA 5G3AA 5KAIO 3BRYA 4O49A 5T5FA 2Y2XA 3PGSA 2R88A 3PGUA 2XE2A 1PHOA 8PRNA 3DWOX 3K19A 2KZ7B 2ODJA 4AKRB 1QJ9A 3WU2O 4N58A 4E1SA 2FGRA 3DA3A 5GV0A 3GP6A 4G75A 3VZTX 5GTHO 4UB6O 3HOEA 2Y7SA
chains in the Genus database with same CATH topology
2JQYA 2F1CX 4CTDA 2IWWA 2WJQA 4PR7A 2WVPA 2X9KA 2WJRA 4FQEA 2IWVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JQY A;  2F1C X;  4CTD A;  2IWW A;  2WJQ A;  4PR7 A;  2WVP A;  2X9K A;  2WJR A;  4FQE A;  2IWV A; 
#chains in the Genus database with same CATH topology
 2R4O A;  4AYD C;  1BT9 A;  2ZLD A;  4AYN A;  4XNL A;  2M06 A;  4D65 A;  4K3C A;  2AXT O;  3FYX A;  1G90 A;  2R4P A;  5H2F O;  5ADX K;  2N2L A;  3AA7 B;  2R8A A;  4KR8 A;  5TIS O;  3T24 A;  3VY9 X;  4CTD A;  1ZHZ A;  4FZM A;  3SZV A;  3AA0 A;  3NJT A;  1MPF A;  2F1V A;  4FOZ A;  2WVP A;  2R4N A;  4RLB A;  4FSP A;  2XTQ A;  2KXP B;  3A0B O;  1HXT A;  5B5E O;  3JTY A;  5DL8 A;  3SY7 A;  3UAQ A;  4AZL A;  3T20 A;  4O3Z A;  4C69 X;  3DA4 A;  1IZN B;  4GHB A;  3POU A;  4O3X B;  3AAA B;  3DZM A;  2WJR A;  3SY9 A;  2X27 X;  5AFU L;  2IWV A;  2MHL A;  3UU2 A;  5E79 O;  2XE1 A;  4O3Y A;  1T1L A;  2WJQ A;  1H6S 1;  1ZHW A;  1HXX A;  4O4X A;  5G39 A;  5JDP A;  3QRC A;  4F4B A;  3POX A;  3LK4 1;  3VE1 A;  1ZHY A;  3LK3 A;  4AYI D;  1OSM A;  1GFN A;  3T0S A;  2Y0L A;  4LSF A;  2MNH A;  3KVD D;  2W80 C;  2M07 A;  3A0H O;  1Q9G A;  4LSE A;  4N74 A;  4PJ0 O;  4AKM A;  1BXW A;  2XMX A;  3BS0 A;  3C5O A;  2R4L A;  3AAE A;  1MM4 A;  2QTK A;  1QJP A;  3WI5 A;  2OMF A;  3A2S X;  1HXU A;  2JMM A;  3SZD A;  4C00 A;  3UPG A;  4AUI A;  3LK2 A;  4RL9 A;  5D5D A;  1ZHX A;  2Y0K A;  2KDY A;  3POQ A;  4O3W A;  5KAF O;  3WI4 A;  4C4V B;  4D5U A;  2LFU A;  3AA0 B;  3QRA A;  2XG6 A;  4QQ1 A;  5G38 A;  1T16 A;  5DL6 A;  1THQ A;  2Y0H A;  2K0L A;  5DL5 A;  3PQU A;  4RJX A;  7PRN A;  5B66 O;  2GE4 A;  4N75 A;  5FVN A;  2KC0 A;  1QJ8 A;  4U9C A;  3SYS A;  3AA1 A;  4XNK A;  1BH3 A;  4FZN A;  4K3B A;  4D64 A;  5AFU K;  4JFB A;  4BUM X;  4GCS A;  4Z3T A;  3PF1 A;  4B61 A;  2XTR A;  4UB8 O;  3AA6 A;  2LHF A;  5PRN A;  3PRN A;  2ZFG A;  3PQS A;  4GCP A;  3LK3 B;  4FSO A;  2F1C X;  4FRX A;  3RBH A;  3VE2 A;  4GCQ A;  2ERV A;  3POR A;  4KR4 A;  1GFP A;  3PGR A;  4FRT A;  5EE2 A;  1GFO A;  2KZ7 A;  3AAE B;  2N2M A;  4FZL A;  4AKR A;  2K4T A;  1P4T A;  4AFK A;  1S5L O;  3LK4 2;  2IWW A;  1Q9F A;  2X9K A;  2POR A;  2R89 A;  4FQE A;  3EMN X;  3LK2 B;  3HWB A;  2JQY A;  2XE3 A;  4FMS A;  2FGQ X;  4LSH A;  3V8U A;  3DWN A;  3O0E A;  2F1T A;  6PRN A;  5IYU A;  2O4V A;  2YPV A;  3JCU O;  4E1T A;  4N59 A;  2PRN A;  4JCH A;  4PUX A;  4IL6 O;  5ADX L;  4O4U A;  1PRN A;  2XE5 A;  4G76 A;  1MM5 A;  4LSI A;  3HW9 A;  3NSG A;  4FES A;  3AA7 A;  4FUV A;  2J1N A;  1ORM A;  3TZG A;  5DL7 A;  3SYB A;  4GF4 A;  4PR7 A;  3AA1 B;  5GTI O;  3VY8 X;  3VZU X;  1OPF A;  1ZHT A;  4RJW A;  4C4V A;  4FT6 A;  2KXP A;  3KZI O;  4KRA A;  4AYM C;  1YS5 A;  2J4U P;  5G26 A;  3AA6 B;  3VZW X;  1E54 A;  4RLC A;  4AYE C;  1IZN A;  1GFQ A;  3BRZ A;  2W81 C;  2YNK A;  3AAA A;  1GFM A;  3G7G A;  3HOL A;  5G3A A;  5KAI O;  3BRY A;  4O49 A;  5T5F A;  2Y2X A;  3PGS A;  2R88 A;  3PGU A;  2XE2 A;  1PHO A;  8PRN A;  3DWO X;  3K19 A;  2KZ7 B;  2ODJ A;  4AKR B;  1QJ9 A;  3WU2 O;  4N58 A;  4E1S A;  2FGR A;  3DA3 A;  5GV0 A;  3GP6 A;  4G75 A;  3VZT X;  5GTH O;  4UB6 O;  3HOE A;  2Y7S A; 
#chains in the Genus database with same CATH homology
 2JQY A;  2F1C X;  4CTD A;  2IWW A;  2WJQ A;  4PR7 A;  2WVP A;  2X9K A;  2WJR A;  4FQE A;  2IWV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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