2IX2A

Crystal structure of the heterotrimeric pcna from sulfolobus solfataricus
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
248
structure length
226
Chain Sequence
FKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASKATIELTDSGLKIIIRDEKSGAKSTIYIKNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the Heterotrimeric PCNA from Sulfolobus Solfataricus.
pubmed doi rcsb
molecule keywords DNA POLYMERASE SLIDING CLAMP B
molecule tags Replication
source organism Sulfolobus solfataricus
total genus 50
structure length 226
sequence length 248
ec nomenclature
pdb deposition date 2006-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 2ix2A01
3F1WA 3G65B 4ZTDA 3P83A 3AIZC 3U5ZF 5E0UA 2IO4B 3AIXB 2NTIB 3GGRC 5AUJA 3P87A 2IZOC 3I2MX 1B77A 1PLRA 4TR6A 4L60A 2IO4A 5A6DA 1UL1A 3AIXA 2NTIA 1PLQA 4HK1A 5IXAA 2HIKC 1IZ5A 2OD8A 3WGWA 1CZDA 3U61F 5HACA 5JNED 3GPNA 1DMLA 3A1JC 3VKXA 2ZVKA 5B7OA 2IJXA 3FDSC 3AIZA 1VYJA 1SXJF 3G65A 4L6PA 1RXZA 1AXCA 2HIIB 1T6LA 4D2GA 4YHRA 2HIKB 3A2FB 1W60A 1RXMA 2IX2C 2AWAA 5H0TA 3K4XA 3A1JB 2HIIA 1IZ4A 3U60F 3HI8A 2HIKA 1U76A 5DAIA 1ISQA 3GGRB 2IZOB 5IWDA 3HSLX 2IX2B 1GE8A 2NTIC 2AVTA 4RJFA 1UD9A 3TBLA 3P91A 3GGRA 1B8HA 3IFVA 4CS5A 1VYMA 2ZVLA 5E0TA 2IX2A 5E0VA 3LX2A 3G65C 3GPMA 3LX1A 1U7BA 2Z0LA 2ZVMA 3A1JA 3V62B 1RWZA 2ZVVA 5CFKA 3V61B 5IY4A 2HIIC 5DA7A 2ZVWA 3FDSD 1YYPA 3V60B
chains in the Genus database with same CATH superfamily
3F1WA 3G65B 4ZTDA 3P83A 3AIZC 3U5ZF 5E0UA 2IO4B 3AIXB 2NTIB 3GGRC 5AUJA 3P87A 2IZOC 3I2MX 1B77A 1PLRA 4TR6A 4L60A 2IO4A 5A6DA 1UL1A 3AIXA 2NTIA 1PLQA 4HK1A 5IXAA 2HIKC 1IZ5A 2OD8A 3WGWA 1CZDA 3U61F 5HACA 5JNED 3GPNA 1DMLA 3A1JC 3VKXA 2ZVKA 5B7OA 2IJXA 3FDSC 3AIZA 1VYJA 1SXJF 3G65A 4L6PA 1RXZA 1AXCA 2HIIB 1T6LA 4D2GA 4YHRA 2HIKB 3A2FB 1W60A 1RXMA 2IX2C 2AWAA 5H0TA 3K4XA 3A1JB 2HIIA 1IZ4A 3U60F 3HI8A 2HIKA 1U76A 5DAIA 1ISQA 3GGRB 2IZOB 5IWDA 3HSLX 2IX2B 1GE8A 2NTIC 2AVTA 4RJFA 1UD9A 3TBLA 3P91A 3GGRA 1B8HA 3IFVA 4CS5A 1VYMA 2ZVLA 5E0TA 2IX2A 5E0VA 3LX2A 3G65C 3GPMA 3LX1A 1U7BA 2Z0LA 2ZVMA 3A1JA 3V62B 1RWZA 2ZVVA 5CFKA 3V61B 5IY4A 2HIIC 5DA7A 2ZVWA 3FDSD 1YYPA 3V60B
chains in the Genus database with same CATH topology
3F1WA 3G65B 4ZTDA 3P83A 3AIZC 3U5ZF 5E0UA 2IO4B 3AIXB 2NTIB 3GGRC 5AUJA 3P87A 2IZOC 3I2MX 1B77A 1PLRA 4TR6A 4L60A 2IO4A 5A6DA 1UL1A 3AIXA 2NTIA 1PLQA 4HK1A 5IXAA 2HIKC 1IZ5A 2OD8A 3WGWA 1CZDA 3U61F 5HACA 5JNED 3GPNA 1DMLA 3A1JC 3VKXA 2ZVKA 5B7OA 2IJXA 3FDSC 3AIZA 1VYJA 1SXJF 3G65A 4L6PA 1RXZA 1AXCA 2HIIB 1T6LA 4D2GA 4YHRA 2HIKB 3A2FB 1W60A 1RXMA 2IX2C 2AWAA 5H0TA 3K4XA 3A1JB 2HIIA 1IZ4A 3U60F 3HI8A 2HIKA 1U76A 5DAIA 1ISQA 3GGRB 2IZOB 5IWDA 3HSLX 2IX2B 1GE8A 2NTIC 2AVTA 4RJFA 1UD9A 3TBLA 3P91A 3GGRA 1B8HA 3IFVA 4CS5A 1VYMA 2ZVLA 5E0TA 2IX2A 5E0VA 3LX2A 3G65C 3GPMA 3LX1A 1U7BA 2Z0LA 2ZVMA 3A1JA 3V62B 1RWZA 2ZVVA 5CFKA 3V61B 5IY4A 2HIIC 5DA7A 2ZVWA 3FDSD 1YYPA 3V60B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F1W A;  3G65 B;  4ZTD A;  3P83 A;  3AIZ C;  3U5Z F;  5E0U A;  2IO4 B;  3AIX B;  2NTI B;  3GGR C;  5AUJ A;  3P87 A;  2IZO C;  3I2M X;  1B77 A;  1PLR A;  4TR6 A;  4L60 A;  2IO4 A;  5A6D A;  1UL1 A;  3AIX A;  2NTI A;  1PLQ A;  4HK1 A;  5IXA A;  2HIK C;  1IZ5 A;  2OD8 A;  3WGW A;  1CZD A;  3U61 F;  5HAC A;  5JNE D;  3GPN A;  1DML A;  3A1J C;  3VKX A;  2ZVK A;  5B7O A;  2IJX A;  3FDS C;  3AIZ A;  1VYJ A;  1SXJ F;  3G65 A;  4L6P A;  1RXZ A;  1AXC A;  2HII B;  1T6L A;  4D2G A;  4YHR A;  2HIK B;  3A2F B;  1W60 A;  1RXM A;  2IX2 C;  2AWA A;  5H0T A;  3K4X A;  3A1J B;  2HII A;  1IZ4 A;  3U60 F;  3HI8 A;  2HIK A;  1U76 A;  5DAI A;  1ISQ A;  3GGR B;  2IZO B;  5IWD A;  3HSL X;  2IX2 B;  1GE8 A;  2NTI C;  2AVT A;  4RJF A;  1UD9 A;  3TBL A;  3P91 A;  3GGR A;  1B8H A;  3IFV A;  4CS5 A;  1VYM A;  2ZVL A;  5E0T A;  2IX2 A;  5E0V A;  3LX2 A;  3G65 C;  3GPM A;  3LX1 A;  1U7B A;  2Z0L A;  2ZVM A;  3A1J A;  3V62 B;  1RWZ A;  2ZVV A;  5CFK A;  3V61 B;  5IY4 A;  2HII C;  5DA7 A;  2ZVW A;  3FDS D;  1YYP A;  3V60 B; 
#chains in the Genus database with same CATH topology
 3F1W A;  3G65 B;  4ZTD A;  3P83 A;  3AIZ C;  3U5Z F;  5E0U A;  2IO4 B;  3AIX B;  2NTI B;  3GGR C;  5AUJ A;  3P87 A;  2IZO C;  3I2M X;  1B77 A;  1PLR A;  4TR6 A;  4L60 A;  2IO4 A;  5A6D A;  1UL1 A;  3AIX A;  2NTI A;  1PLQ A;  4HK1 A;  5IXA A;  2HIK C;  1IZ5 A;  2OD8 A;  3WGW A;  1CZD A;  3U61 F;  5HAC A;  5JNE D;  3GPN A;  1DML A;  3A1J C;  3VKX A;  2ZVK A;  5B7O A;  2IJX A;  3FDS C;  3AIZ A;  1VYJ A;  1SXJ F;  3G65 A;  4L6P A;  1RXZ A;  1AXC A;  2HII B;  1T6L A;  4D2G A;  4YHR A;  2HIK B;  3A2F B;  1W60 A;  1RXM A;  2IX2 C;  2AWA A;  5H0T A;  3K4X A;  3A1J B;  2HII A;  1IZ4 A;  3U60 F;  3HI8 A;  2HIK A;  1U76 A;  5DAI A;  1ISQ A;  3GGR B;  2IZO B;  5IWD A;  3HSL X;  2IX2 B;  1GE8 A;  2NTI C;  2AVT A;  4RJF A;  1UD9 A;  3TBL A;  3P91 A;  3GGR A;  1B8H A;  3IFV A;  4CS5 A;  1VYM A;  2ZVL A;  5E0T A;  2IX2 A;  5E0V A;  3LX2 A;  3G65 C;  3GPM A;  3LX1 A;  1U7B A;  2Z0L A;  2ZVM A;  3A1J A;  3V62 B;  1RWZ A;  2ZVV A;  5CFK A;  3V61 B;  5IY4 A;  2HII C;  5DA7 A;  2ZVW A;  3FDS D;  1YYP A;  3V60 B; 
#chains in the Genus database with same CATH homology
 3F1W A;  3G65 B;  4ZTD A;  3P83 A;  3AIZ C;  3U5Z F;  5E0U A;  2IO4 B;  3AIX B;  2NTI B;  3GGR C;  5AUJ A;  3P87 A;  2IZO C;  3I2M X;  1B77 A;  1PLR A;  4TR6 A;  4L60 A;  2IO4 A;  5A6D A;  1UL1 A;  3AIX A;  2NTI A;  1PLQ A;  4HK1 A;  5IXA A;  2HIK C;  1IZ5 A;  2OD8 A;  3WGW A;  1CZD A;  3U61 F;  5HAC A;  5JNE D;  3GPN A;  1DML A;  3A1J C;  3VKX A;  2ZVK A;  5B7O A;  2IJX A;  3FDS C;  3AIZ A;  1VYJ A;  1SXJ F;  3G65 A;  4L6P A;  1RXZ A;  1AXC A;  2HII B;  1T6L A;  4D2G A;  4YHR A;  2HIK B;  3A2F B;  1W60 A;  1RXM A;  2IX2 C;  2AWA A;  5H0T A;  3K4X A;  3A1J B;  2HII A;  1IZ4 A;  3U60 F;  3HI8 A;  2HIK A;  1U76 A;  5DAI A;  1ISQ A;  3GGR B;  2IZO B;  5IWD A;  3HSL X;  2IX2 B;  1GE8 A;  2NTI C;  2AVT A;  4RJF A;  1UD9 A;  3TBL A;  3P91 A;  3GGR A;  1B8H A;  3IFV A;  4CS5 A;  1VYM A;  2ZVL A;  5E0T A;  2IX2 A;  5E0V A;  3LX2 A;  3G65 C;  3GPM A;  3LX1 A;  1U7B A;  2Z0L A;  2ZVM A;  3A1J A;  3V62 B;  1RWZ A;  2ZVV A;  5CFK A;  3V61 B;  5IY4 A;  2HII C;  5DA7 A;  2ZVW A;  3FDS D;  1YYP A;  3V60 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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