2J1NA

Osmoporin ompc
Total Genus 102
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
102
sequence length
346
structure length
346
Chain Sequence
AEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Escherichia coli
publication title Crystal Structure of Osmoporin Ompc from E. Coli at 2.0 A.
pubmed doi rcsb
molecule keywords OUTER MEMBRANE PROTEIN C
total genus 102
structure length 346
sequence length 346
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2006-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2j1nA00
4LSIA 3SYSA 1HXXA 5JDPA 1OSMA 2QTKA 3HW9A 4D65A 2Y0HA 7PRNA 5DL7A 2ZLDA 3T20A 4KRAA 5PRNA 2Y2XA 2XE3A 3PRNA 1BH3A 1GFPA 4C69X 3HWBA 2J4UP 4FOZA 1GFMA 2Y0KA 3UU2A 4D5UA 5FVNA 3NSGA 2XE5A 3SY9A 4RJXA 3A2SX 4GCQA 4LSHA 4FRTA 4FMSA 3T0SA 4FSOA 3O0EA 4D64A 3VY8X 3UPGA 1MPFA 6PRNA 4FSPA 3JTYA 2XE2A 2XG6A 4FT6A 4FRXA 2OMFA 3K19A 1E54A 3POQA 3FYXA 2PORA 3SZVA 4LSEA 2J1NA 3PORA 1GFOA 3POXA 2XE1A 1PRNA 1GFNA 1GFQA 3VZUX 1PHOA 4GCSA 4GCPA 2Y0LA 2PRNA 2FGRA 3SYBA 2ODJA 4BUMX 1HXTA 3WI4A 8PRNA 1OPFA 3SZDA 3POUA 4LSFA 1H6S1 4AUIA 1BT9A 3T24A 5DL8A 3VZWX 1HXUA 4JFBA 2FGQX 2O4VA 2K4TA 3SY7A 4KR4A 5DL5A 2ZFGA 5DL6A 3EMNX 4RJWA 3WI5A 3VZTX 3VY9X 4KR8A
chains in the Genus database with same CATH superfamily
4LSIA 3AA7A 2F1TA 3SYSA 5B66O 5IYUA 1HXXA 3C5OA 1OSMA 1S5LO 2QTKA 3AA7B 5JDPA 3GP6A 2KZ7A 3HW9A 4D65A 2Y0HA 3KVDD 4FZLA 7PRNA 2KZ7B 5DL7A 2ZLDA 4FQEA 3WU2O 4AYDC 4AYMC 3T20A 4O4UA 5E79O 3TZGA 4KRAA 5PRNA 2Y2XA 4N59A 2XE3A 3VE2A 4F4BA 3PRNA 4UB8O 5AFUL 3PF1A 4E1TA 1BH3A 2KDYA 1GFPA 3NJTA 5TISO 4AKRA 4RL9A 4IL6O 4U9CA 4AKRB 5GTHO 4FESA 4PR7A 5KAFO 5GTIO 4C69X 3HWBA 3LK41 1QJ8A 1MM5A 4FZNA 4O49A 2J4UP 4K3BA 4O3WA 3DZMA 4FOZA 1GFMA 2Y0KA 3UU2A 4D5UA 3RBHA 4RLBA 3DA4A 5FVNA 3NSGA 2XE5A 4K3CA 2JQYA 2KXPA 4N58A 3SY9A 4RJXA 2KXPB 3A2SX 2X27X 4GCQA 4LSHA 4O3XB 5T5FA 2R88A 4AYEC 4G75A 4FRTA 5KAIO 3A0BO 2AXTO 2N2MA 4GF4A 3VE1A 2IWVA 1QJ9A 1QJPA 4FMSA 1T1LA 1ZHYA 3PQUA 3LK2A 4FSOA 1BXWA 3O0EA 3T0SA 3LK2B 3VY8X 4AYID 3PQSA 4UB6O 4C00A 4D64A 4E1SA 3AAEA 3LK3A 4O4XA 4AYNA 3DWOX 3AAEB 2R4OA 3LK3B 3UPGA 1MPFA 4GHBA 3DA3A 1ZHZA 1ZHXA 2JMMA 2IWWA 5G39A 1G90A 5G3AA 6PRNA 2R4PA 1MM4A 4FSPA 3JTYA 2XE2A 5D5DA 2X9KA 2XG6A 4FT6A 3QRAA 3HOLA 1Q9GA 2OMFA 2XTQA 3AAAA 1E54A 3K19A 4FRXA 3LK42 3POQA 3AAAB 3QRCA 3FYXA 2PORA 3SZVA 2WJRA 2J1NA 4LSEA 4O3YA 1ZHWA 3PORA 1THQA 1GFOA 5G26A 3AA1A 3AA1B 3POXA 4AZLA 2R8AA 2LHFA 2XE1A 1PRNA 3PGSA 1GFNA 4Z3TA 2K0LA 1GFQA 4RLCA 1PHOA 3VZUX 4N75A 5H2FO 4XNKA 2W81C 4GCSA 4XNLA 4GCPA 5EE2A 2Y0LA 4PUXA 2PRNA 2FGRA 3UAQA 4AFKA 3SYBA 2ODJA 2GE4A 2LFUA 2MNHA 2XMXA 4AKMA 4BUMX 4CTDA 1ORMA 1HXTA 2W80C 2XTRA 2M06A 3WI4A 8PRNA 1T16A 2Y7SA 2MHLA 2KC0A 1OPFA 4B61A 1IZNA 3SZDA 3POUA 1IZNB 3G7GA 4FZMA 1H6S1 3BRYA 4LSFA 2WVPA 2YPVA 1YS5A 4AUIA 1Q9FA 1BT9A 3A0HO 3PGUA 3DWNA 3PGRA 4N74A 5DL8A 3T24A 3VZWX 5G38A 5GV0A 5B5EO 1HXUA 2F1VA 2R4LA 3AA6A 4JFBA 2YNKA 4QQ1A 4PJ0O 3AA6B 2F1CX 3JCUO 5ADXL 4G76A 2FGQX 2O4VA 2N2LA 4JCHA 3BS0A 3KZIO 2K4TA 2R4NA 3SY7A 4KR4A 5DL5A 2ERVA 3V8UA 3AA0A 1P4TA 2WJQA 2ZFGA 2R89A 5DL6A 2M07A 4C4VA 3AA0B 4FUVA 3EMNX 5AFUK 1ZHTA 4RJWA 4O3ZA 3VZTX 3BRZA 3VY9X 3WI5A 4C4VB 5ADXK 3HOEA 4KR8A
chains in the Genus database with same CATH topology
4LSIA 3AA7A 2F1TA 3SYSA 5IYUA 1HXXA 3C5OA 1OSMA 3AA7B 2QTKA 5JDPA 3GP6A 2KZ7A 3HW9A 4D65A 2Y0HA 3KVDD 4FZLA 7PRNA 2KZ7B 5DL7A 2ZLDA 4AYDC 4AYMC 3T20A 4O4UA 3TZGA 4KRAA 5PRNA 2Y2XA 4N59A 2XE3A 3VE2A 4F4BA 3PRNA 5AFUL 4E1TA 1BH3A 2KDYA 1GFPA 4AKRA 4RL9A 4U9CA 4AKRB 4FESA 4C69X 3HWBA 3LK41 1QJ8A 1MM5A 4FZNA 4O49A 2J4UP 4O3WA 4FOZA 1GFMA 2Y0KA 3UU2A 4D5UA 3RBHA 4RLBA 3DA4A 5FVNA 3NSGA 2XE5A 2KXPA 4N58A 3SY9A 4RJXA 2KXPB 3A2SX 2X27X 4GCQA 4LSHA 4O3XB 5T5FA 4AYEC 4G75A 4FRTA 2N2MA 4GF4A 3VE1A 1QJ9A 1QJPA 4FMSA 1ZHYA 3T0SA 3PQUA 3LK2A 4FSOA 1BXWA 3O0EA 4E1SA 3LK2B 3VY8X 4AYID 3PQSA 4D64A 3AAEA 3LK3A 4O4XA 4AYNA 3AAEB 3LK3B 3UPGA 1MPFA 4GHBA 3DA3A 1ZHZA 1ZHXA 2JMMA 1G90A 6PRNA 4FSPA 1MM4A 3JTYA 2XE2A 5D5DA 2XG6A 4FT6A 3QRAA 3HOLA 1Q9GA 2OMFA 2XTQA 3AAAA 1E54A 3K19A 4FRXA 3LK42 3POQA 3AAAB 3QRCA 3FYXA 2PORA 3SZVA 4LSEA 2J1NA 4O3YA 1ZHWA 3PORA 1THQA 1GFOA 5G26A 3AA1A 3AA1B 3POXA 4AZLA 2XE1A 2LHFA 1PRNA 1GFNA 4Z3TA 2K0LA 1GFQA 4RLCA 1PHOA 3VZUX 4XNKA 2W81C 4GCSA 4XNLA 4GCPA 5EE2A 2Y0LA 4PUXA 2PRNA 2FGRA 3UAQA 4AFKA 3SYBA 2ODJA 2GE4A 2LFUA 2MNHA 2XMXA 4AKMA 4BUMX 1ORMA 1HXTA 2W80C 2XTRA 2M06A 3WI4A 8PRNA 2Y7SA 2MHLA 2KC0A 1OPFA 4B61A 1IZNA 3SZDA 3POUA 1IZNB 3G7GA 4FZMA 1H6S1 4LSFA 2YPVA 1YS5A 4AUIA 1Q9FA 1BT9A 3T24A 5GV0A 5DL8A 3VZWX 1HXUA 2F1VA 3AA6A 4JFBA 4QQ1A 2YNKA 5ADXL 3AA6B 4G76A 2FGQX 2O4VA 2N2LA 4JCHA 2K4TA 3SY7A 4KR4A 5DL5A 2ERVA 3V8UA 3AA0A 1P4TA 2ZFGA 5DL6A 2M07A 3AA0B 4FUVA 3EMNX 5AFUK 1ZHTA 4RJWA 4O3ZA 3VZTX 3VY9X 3WI5A 5ADXK 3HOEA 4KR8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LSI A;  3SYS A;  1HXX A;  5JDP A;  1OSM A;  2QTK A;  3HW9 A;  4D65 A;  2Y0H A;  7PRN A;  5DL7 A;  2ZLD A;  3T20 A;  4KRA A;  5PRN A;  2Y2X A;  2XE3 A;  3PRN A;  1BH3 A;  1GFP A;  4C69 X;  3HWB A;  2J4U P;  4FOZ A;  1GFM A;  2Y0K A;  3UU2 A;  4D5U A;  5FVN A;  3NSG A;  2XE5 A;  3SY9 A;  4RJX A;  3A2S X;  4GCQ A;  4LSH A;  4FRT A;  4FMS A;  3T0S A;  4FSO A;  3O0E A;  4D64 A;  3VY8 X;  3UPG A;  1MPF A;  6PRN A;  4FSP A;  3JTY A;  2XE2 A;  2XG6 A;  4FT6 A;  4FRX A;  2OMF A;  3K19 A;  1E54 A;  3POQ A;  3FYX A;  2POR A;  3SZV A;  4LSE A;  2J1N A;  3POR A;  1GFO A;  3POX A;  2XE1 A;  1PRN A;  1GFN A;  1GFQ A;  3VZU X;  1PHO A;  4GCS A;  4GCP A;  2Y0L A;  2PRN A;  2FGR A;  3SYB A;  2ODJ A;  4BUM X;  1HXT A;  3WI4 A;  8PRN A;  1OPF A;  3SZD A;  3POU A;  4LSF A;  1H6S 1;  4AUI A;  1BT9 A;  3T24 A;  5DL8 A;  3VZW X;  1HXU A;  4JFB A;  2FGQ X;  2O4V A;  2K4T A;  3SY7 A;  4KR4 A;  5DL5 A;  2ZFG A;  5DL6 A;  3EMN X;  4RJW A;  3WI5 A;  3VZT X;  3VY9 X;  4KR8 A; 
#chains in the Genus database with same CATH topology
 4LSI A;  3AA7 A;  2F1T A;  3SYS A;  5B66 O;  5IYU A;  1HXX A;  3C5O A;  1OSM A;  1S5L O;  2QTK A;  3AA7 B;  5JDP A;  3GP6 A;  2KZ7 A;  3HW9 A;  4D65 A;  2Y0H A;  3KVD D;  4FZL A;  7PRN A;  2KZ7 B;  5DL7 A;  2ZLD A;  4FQE A;  3WU2 O;  4AYD C;  4AYM C;  3T20 A;  4O4U A;  5E79 O;  3TZG A;  4KRA A;  5PRN A;  2Y2X A;  4N59 A;  2XE3 A;  3VE2 A;  4F4B A;  3PRN A;  4UB8 O;  5AFU L;  3PF1 A;  4E1T A;  1BH3 A;  2KDY A;  1GFP A;  3NJT A;  5TIS O;  4AKR A;  4RL9 A;  4IL6 O;  4U9C A;  4AKR B;  5GTH O;  4FES A;  4PR7 A;  5KAF O;  5GTI O;  4C69 X;  3HWB A;  3LK4 1;  1QJ8 A;  1MM5 A;  4FZN A;  4O49 A;  2J4U P;  4K3B A;  4O3W A;  3DZM A;  4FOZ A;  1GFM A;  2Y0K A;  3UU2 A;  4D5U A;  3RBH A;  4RLB A;  3DA4 A;  5FVN A;  3NSG A;  2XE5 A;  4K3C A;  2JQY A;  2KXP A;  4N58 A;  3SY9 A;  4RJX A;  2KXP B;  3A2S X;  2X27 X;  4GCQ A;  4LSH A;  4O3X B;  5T5F A;  2R88 A;  4AYE C;  4G75 A;  4FRT A;  5KAI O;  3A0B O;  2AXT O;  2N2M A;  4GF4 A;  3VE1 A;  2IWV A;  1QJ9 A;  1QJP A;  4FMS A;  1T1L A;  1ZHY A;  3PQU A;  3LK2 A;  4FSO A;  1BXW A;  3O0E A;  3T0S A;  3LK2 B;  3VY8 X;  4AYI D;  3PQS A;  4UB6 O;  4C00 A;  4D64 A;  4E1S A;  3AAE A;  3LK3 A;  4O4X A;  4AYN A;  3DWO X;  3AAE B;  2R4O A;  3LK3 B;  3UPG A;  1MPF A;  4GHB A;  3DA3 A;  1ZHZ A;  1ZHX A;  2JMM A;  2IWW A;  5G39 A;  1G90 A;  5G3A A;  6PRN A;  2R4P A;  1MM4 A;  4FSP A;  3JTY A;  2XE2 A;  5D5D A;  2X9K A;  2XG6 A;  4FT6 A;  3QRA A;  3HOL A;  1Q9G A;  2OMF A;  2XTQ A;  3AAA A;  1E54 A;  3K19 A;  4FRX A;  3LK4 2;  3POQ A;  3AAA B;  3QRC A;  3FYX A;  2POR A;  3SZV A;  2WJR A;  2J1N A;  4LSE A;  4O3Y A;  1ZHW A;  3POR A;  1THQ A;  1GFO A;  5G26 A;  3AA1 A;  3AA1 B;  3POX A;  4AZL A;  2R8A A;  2LHF A;  2XE1 A;  1PRN A;  3PGS A;  1GFN A;  4Z3T A;  2K0L A;  1GFQ A;  4RLC A;  1PHO A;  3VZU X;  4N75 A;  5H2F O;  4XNK A;  2W81 C;  4GCS A;  4XNL A;  4GCP A;  5EE2 A;  2Y0L A;  4PUX A;  2PRN A;  2FGR A;  3UAQ A;  4AFK A;  3SYB A;  2ODJ A;  2GE4 A;  2LFU A;  2MNH A;  2XMX A;  4AKM A;  4BUM X;  4CTD A;  1ORM A;  1HXT A;  2W80 C;  2XTR A;  2M06 A;  3WI4 A;  8PRN A;  1T16 A;  2Y7S A;  2MHL A;  2KC0 A;  1OPF A;  4B61 A;  1IZN A;  3SZD A;  3POU A;  1IZN B;  3G7G A;  4FZM A;  1H6S 1;  3BRY A;  4LSF A;  2WVP A;  2YPV A;  1YS5 A;  4AUI A;  1Q9F A;  1BT9 A;  3A0H O;  3PGU A;  3DWN A;  3PGR A;  4N74 A;  5DL8 A;  3T24 A;  3VZW X;  5G38 A;  5GV0 A;  5B5E O;  1HXU A;  2F1V A;  2R4L A;  3AA6 A;  4JFB A;  2YNK A;  4QQ1 A;  4PJ0 O;  3AA6 B;  2F1C X;  3JCU O;  5ADX L;  4G76 A;  2FGQ X;  2O4V A;  2N2L A;  4JCH A;  3BS0 A;  3KZI O;  2K4T A;  2R4N A;  3SY7 A;  4KR4 A;  5DL5 A;  2ERV A;  3V8U A;  3AA0 A;  1P4T A;  2WJQ A;  2ZFG A;  2R89 A;  5DL6 A;  2M07 A;  4C4V A;  3AA0 B;  4FUV A;  3EMN X;  5AFU K;  1ZHT A;  4RJW A;  4O3Z A;  3VZT X;  3BRZ A;  3VY9 X;  3WI5 A;  4C4V B;  5ADX K;  3HOE A;  4KR8 A; 
#chains in the Genus database with same CATH homology
 4LSI A;  3AA7 A;  2F1T A;  3SYS A;  5IYU A;  1HXX A;  3C5O A;  1OSM A;  3AA7 B;  2QTK A;  5JDP A;  3GP6 A;  2KZ7 A;  3HW9 A;  4D65 A;  2Y0H A;  3KVD D;  4FZL A;  7PRN A;  2KZ7 B;  5DL7 A;  2ZLD A;  4AYD C;  4AYM C;  3T20 A;  4O4U A;  3TZG A;  4KRA A;  5PRN A;  2Y2X A;  4N59 A;  2XE3 A;  3VE2 A;  4F4B A;  3PRN A;  5AFU L;  4E1T A;  1BH3 A;  2KDY A;  1GFP A;  4AKR A;  4RL9 A;  4U9C A;  4AKR B;  4FES A;  4C69 X;  3HWB A;  3LK4 1;  1QJ8 A;  1MM5 A;  4FZN A;  4O49 A;  2J4U P;  4O3W A;  4FOZ A;  1GFM A;  2Y0K A;  3UU2 A;  4D5U A;  3RBH A;  4RLB A;  3DA4 A;  5FVN A;  3NSG A;  2XE5 A;  2KXP A;  4N58 A;  3SY9 A;  4RJX A;  2KXP B;  3A2S X;  2X27 X;  4GCQ A;  4LSH A;  4O3X B;  5T5F A;  4AYE C;  4G75 A;  4FRT A;  2N2M A;  4GF4 A;  3VE1 A;  1QJ9 A;  1QJP A;  4FMS A;  1ZHY A;  3T0S A;  3PQU A;  3LK2 A;  4FSO A;  1BXW A;  3O0E A;  4E1S A;  3LK2 B;  3VY8 X;  4AYI D;  3PQS A;  4D64 A;  3AAE A;  3LK3 A;  4O4X A;  4AYN A;  3AAE B;  3LK3 B;  3UPG A;  1MPF A;  4GHB A;  3DA3 A;  1ZHZ A;  1ZHX A;  2JMM A;  1G90 A;  6PRN A;  4FSP A;  1MM4 A;  3JTY A;  2XE2 A;  5D5D A;  2XG6 A;  4FT6 A;  3QRA A;  3HOL A;  1Q9G A;  2OMF A;  2XTQ A;  3AAA A;  1E54 A;  3K19 A;  4FRX A;  3LK4 2;  3POQ A;  3AAA B;  3QRC A;  3FYX A;  2POR A;  3SZV A;  4LSE A;  2J1N A;  4O3Y A;  1ZHW A;  3POR A;  1THQ A;  1GFO A;  5G26 A;  3AA1 A;  3AA1 B;  3POX A;  4AZL A;  2XE1 A;  2LHF A;  1PRN A;  1GFN A;  4Z3T A;  2K0L A;  1GFQ A;  4RLC A;  1PHO A;  3VZU X;  4XNK A;  2W81 C;  4GCS A;  4XNL A;  4GCP A;  5EE2 A;  2Y0L A;  4PUX A;  2PRN A;  2FGR A;  3UAQ A;  4AFK A;  3SYB A;  2ODJ A;  2GE4 A;  2LFU A;  2MNH A;  2XMX A;  4AKM A;  4BUM X;  1ORM A;  1HXT A;  2W80 C;  2XTR A;  2M06 A;  3WI4 A;  8PRN A;  2Y7S A;  2MHL A;  2KC0 A;  1OPF A;  4B61 A;  1IZN A;  3SZD A;  3POU A;  1IZN B;  3G7G A;  4FZM A;  1H6S 1;  4LSF A;  2YPV A;  1YS5 A;  4AUI A;  1Q9F A;  1BT9 A;  3T24 A;  5GV0 A;  5DL8 A;  3VZW X;  1HXU A;  2F1V A;  3AA6 A;  4JFB A;  4QQ1 A;  2YNK A;  5ADX L;  3AA6 B;  4G76 A;  2FGQ X;  2O4V A;  2N2L A;  4JCH A;  2K4T A;  3SY7 A;  4KR4 A;  5DL5 A;  2ERV A;  3V8U A;  3AA0 A;  1P4T A;  2ZFG A;  5DL6 A;  2M07 A;  3AA0 B;  4FUV A;  3EMN X;  5AFU K;  1ZHT A;  4RJW A;  4O3Z A;  3VZT X;  3VY9 X;  3WI5 A;  5ADX K;  3HOE A;  4KR8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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