2J1NA

Osmoporin ompc
Total Genus 102
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
102
sequence length
346
structure length
346
Chain Sequence
b'AEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLVDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Osmoporin Ompc from E. Coli at 2.0 A.
pubmed doi rcsb
molecule keywords OUTER MEMBRANE PROTEIN C
source organism Escherichia coli
molecule tags Transport protein
total genus 102
structure length 346
sequence length 346
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2006-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2j1nA00
4FSOA 1OPFA 4GCPA 1GFQA 3VY9X 4LSEA 1GFPA 2Y0KA 4D64A 3PORA 4AUIA 2PORA 2J1NA 3POUA 1HXUA 2ODJA 1PHOA 2XE1A 5DL5A 3SZDA 7PRNA 4GCQA 4FRXA 3FYXA 2XE2A 3SY7A 4FRTA 3VZUX 3VZTX 3VY8X 3T0SA 8PRNA 4JFBA 2K4TA 4KRAA 4FMSA 4FT6A 1PRNA 3A2SX 2J4UP 4LSHA 5PRNA 3UPGA 6PRNA 2XE3A 2FGQX 3EMNX 3POXA 3HW9A 3JTYA 1HXTA 3SYSA 2XE5A 1H6S1 2FGRA 4LSFA 1OSMA 2Y2XA 3O0EA 3HWBA 3NSGA 2OMFA 1GFOA 2ZFGA 4KR4A 2XG6A 4LSIA 1MPFA 4FOZA 4D65A 4RJXA 3SY9A 4KR8A 3SZVA 2PRNA 3T24A 3PRNA 3T20A 3SYBA 1HXXA 4RJWA 2ZLDA 2Y0HA 3VZWX 5DL8A 3WI4A 4FSPA 1GFNA 2QTKA 3UU2A 1BT9A 2O4VA 5DL6A 3K19A 1GFMA 4D5UA 5FVNA 3POQA 2Y0LA 4GCSA 4C69X 4BUMX 5JDPA 3WI5A 5DL7A 1BH3A 1E54A
chains in the Genus database with same CATH superfamily
5T5FA 4AKRB 4JCHA 3DA3A 4FSOA 1OPFA 4GCPA 2MHLA 5ADXL 1GFQA 1T16A 3HOLA 2KC0A 3VY9X 5B5EO 1ZHYA 1GFPA 2W80C 2Y0KA 4LSEA 1S5LO 4O3YA 1Q9GA 4AYID 4D64A 3KZIO 1QJ9A 2WJRA 3PORA 4FUVA 4AUIA 3JCUO 2PORA 2JMMA 2N2LA 3VE2A 2J1NA 3POUA 4U9CA 1HXUA 3HOEA 4Z3TA 2ODJA 1PHOA 2XE1A 2R8AA 5DL5A 4QQ1A 3SZDA 4CTDA 7PRNA 4FZLA 4GCQA 3DZMA 1E54A 4FRXA 3FYXA 2K0LA 3LK2B 4O3WA 2XMXA 5IYUA 4C00A 2XE2A 3SY7A 4N75A 4FRTA 3UAQA 3VZUX 2IWWA 3VZTX 2R89A 1YS5A 3PGRA 2R88A 4N74A 2WVPA 3T0SA 4K3CA 3VY8X 3AAEA 8PRNA 3C5OA 3VE1A 4JFBA 1ZHWA 4O4XA 4B61A 3WU2O 2LFUA 1ORMA 2K4TA 2IWVA 3AAEB 4GF4A 5ADXK 3PQUA 4KRAA 5G39A 4PR7A 2XTRA 2X27X 4G76A 3PGUA 4FMSA 5KAIO 4FT6A 1PRNA 3A2SX 4FQEA 3QRCA 4LSHA 2J4UP 5PRNA 3UPGA 4E1TA 4AYMC 3LK2A 4O3XB 6PRNA 2XE3A 2FGQX 3V8UA 3EMNX 3POXA 3HW9A 3JTYA 5EE2A 4AKMA 3NJTA 1HXTA 3SYSA 2XE5A 3PQSA 5AFUL 2GE4A 1H6S1 4UB8O 3BS0A 1BXWA 2F1VA 1OSMA 2FGRA 2F1TA 2Y2XA 1T1LA 3AA1A 3LK3A 3O0EA 3HWBA 5TISO 4C4VA 1IZNA 3NSGA 3GP6A 4N58A 2OMFA 4RLBA 1P4TA 3PGSA 1GFOA 2ZFGA 2Y7SA 3AA1B 4KR4A 4O4UA 3LK3B 4C4VB 2KDYA 2XG6A 2R4NA 4FESA 1IZNB 4LSFA 2YPVA 1QJ8A 3G7GA 4N59A 2YNKA 4LSIA 1MPFA 4FOZA 4AZLA 2XTQA 2R4OA 4D65A 1ZHXA 4UB6O 4E1SA 4RJXA 4AYDC 2WJQA 5H2FO 4AYEC 3SY9A 2R4LA 2ERVA 4KR8A 3SZVA 1THQA 2PRNA 3PF1A 2R4PA 5GTIO 3T24A 4AFKA 3AA6A 4IL6O 3RBHA 4RLCA 3PRNA 3T20A 4XNLA 3AAAB 2MNHA 3AA6B 3SYBA 1HXXA 3LK41 3AA7A 4O3ZA 4RJWA 2ZLDA 3TZGA 5G38A 3LK42 3BRYA 2Y0HA 3VZWX 5DL8A 4AYNA 5GV0A 3AA7B 3WI4A 4FSPA 5KAFO 5GTHO 1GFNA 2W81C 4F4BA 2M07A 4GHBA 4RL9A 4FZMA 1MM5A 2QTKA 1MM4A 1ZHTA 3DA4A 2X9KA 4O49A 4XNKA 3UU2A 1BT9A 2O4VA 3BRZA 4PJ0O 5DL6A 3K19A 2F1CX 1GFMA 4FZNA 4D5UA 2AXTO 2N2MA 3AA0A 5FVNA 1QJPA 4PUXA 3QRAA 1G90A 5AFUK 3POQA 2Y0LA 2LHFA 2KXPA 4G75A 4GCSA 2M06A 5B66O 3AA0B 4C69X 3DWNA 5G3AA 2KZ7A 4BUMX 3AAAA 3KVDD 3A0BO 5E79O 3WI5A 5G26A 5JDPA 4AKRA 1Q9FA 4K3BA 3DWOX 2KXPB 1ZHZA 5D5DA 5DL7A 1BH3A 2JQYA 2KZ7B 3A0HO
chains in the Genus database with same CATH topology
5T5FA 4AKRB 4JCHA 3DA3A 4FSOA 1OPFA 4GCPA 2MHLA 5ADXL 1GFQA 3HOLA 2KC0A 3VY9X 1ZHYA 1GFPA 2W80C 2Y0KA 4LSEA 4O3YA 4D64A 1Q9GA 4AYID 1QJ9A 3PORA 4FUVA 4AUIA 2PORA 2JMMA 2N2LA 3VE2A 2J1NA 3POUA 4U9CA 1HXUA 3HOEA 4Z3TA 2ODJA 1PHOA 2XE1A 5DL5A 3SZDA 4QQ1A 7PRNA 4FZLA 4GCQA 1E54A 4FRXA 3FYXA 2K0LA 3LK2B 4O3WA 2XMXA 5IYUA 2XE2A 3SY7A 3UAQA 4FRTA 3VZUX 3VZTX 3VY8X 1YS5A 3T0SA 3AAEA 8PRNA 3C5OA 3VE1A 4JFBA 1ZHWA 4O4XA 4B61A 2LFUA 1ORMA 2K4TA 4GF4A 3AAEB 5ADXK 3PQUA 4KRAA 2XTRA 2X27X 4G76A 4FMSA 4FT6A 1PRNA 3A2SX 2J4UP 3QRCA 4LSHA 5PRNA 3UPGA 4E1TA 4AYMC 3LK2A 4O3XB 6PRNA 2XE3A 2FGQX 3V8UA 3EMNX 3POXA 3HW9A 3JTYA 5EE2A 4AKMA 1HXTA 3SYSA 2XE5A 3PQSA 5AFUL 2GE4A 1H6S1 1BXWA 2F1VA 1OSMA 2FGRA 2F1TA 2Y2XA 3AA1A 3LK3A 3O0EA 4LSFA 3HWBA 1IZNA 3NSGA 3GP6A 4N58A 2OMFA 4RLBA 1P4TA 1GFOA 2ZFGA 2Y7SA 3AA1B 4KR4A 4O4UA 3LK3B 2KDYA 2XG6A 4FESA 1IZNB 2YPVA 1QJ8A 3G7GA 4N59A 2YNKA 4LSIA 1MPFA 4FOZA 4AZLA 2XTQA 4D65A 1ZHXA 4E1SA 4RJXA 4AYDC 4AYEC 3SY9A 2ERVA 4KR8A 3SZVA 1THQA 2PRNA 3T24A 4AFKA 3AA6A 3RBHA 4RLCA 3PRNA 3T20A 4XNLA 3AAAB 2MNHA 3AA6B 3SYBA 1HXXA 3LK41 3AA7A 4O3ZA 4RJWA 2ZLDA 3TZGA 3LK42 2Y0HA 3VZWX 5DL8A 4AYNA 5GV0A 3AA7B 3WI4A 4FSPA 1GFNA 2W81C 4F4BA 2M07A 4GHBA 4RL9A 4FZMA 1MM5A 2QTKA 1MM4A 1ZHTA 3DA4A 4O49A 4XNKA 3UU2A 1BT9A 2O4VA 5DL6A 3K19A 1GFMA 4FZNA 4D5UA 2N2MA 3AA0A 5FVNA 1QJPA 4PUXA 3QRAA 1G90A 3POQA 2Y0LA 2LHFA 2KXPA 4G75A 4GCSA 2M06A 3AA0B 4C69X 5AFUK 2KZ7A 4BUMX 3AAAA 3KVDD 5JDPA 3WI5A 5G26A 4AKRA 1Q9FA 2KXPB 1ZHZA 5D5DA 5DL7A 1BH3A 2KZ7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FSO A;  1OPF A;  4GCP A;  1GFQ A;  3VY9 X;  4LSE A;  1GFP A;  2Y0K A;  4D64 A;  3POR A;  4AUI A;  2POR A;  2J1N A;  3POU A;  1HXU A;  2ODJ A;  1PHO A;  2XE1 A;  5DL5 A;  3SZD A;  7PRN A;  4GCQ A;  4FRX A;  3FYX A;  2XE2 A;  3SY7 A;  4FRT A;  3VZU X;  3VZT X;  3VY8 X;  3T0S A;  8PRN A;  4JFB A;  2K4T A;  4KRA A;  4FMS A;  4FT6 A;  1PRN A;  3A2S X;  2J4U P;  4LSH A;  5PRN A;  3UPG A;  6PRN A;  2XE3 A;  2FGQ X;  3EMN X;  3POX A;  3HW9 A;  3JTY A;  1HXT A;  3SYS A;  2XE5 A;  1H6S 1;  2FGR A;  4LSF A;  1OSM A;  2Y2X A;  3O0E A;  3HWB A;  3NSG A;  2OMF A;  1GFO A;  2ZFG A;  4KR4 A;  2XG6 A;  4LSI A;  1MPF A;  4FOZ A;  4D65 A;  4RJX A;  3SY9 A;  4KR8 A;  3SZV A;  2PRN A;  3T24 A;  3PRN A;  3T20 A;  3SYB A;  1HXX A;  4RJW A;  2ZLD A;  2Y0H A;  3VZW X;  5DL8 A;  3WI4 A;  4FSP A;  1GFN A;  2QTK A;  3UU2 A;  1BT9 A;  2O4V A;  5DL6 A;  3K19 A;  1GFM A;  4D5U A;  5FVN A;  3POQ A;  2Y0L A;  4GCS A;  4C69 X;  4BUM X;  5JDP A;  3WI5 A;  5DL7 A;  1BH3 A;  1E54 A; 
#chains in the Genus database with same CATH topology
 5T5F A;  4AKR B;  4JCH A;  3DA3 A;  4FSO A;  1OPF A;  4GCP A;  2MHL A;  5ADX L;  1GFQ A;  1T16 A;  3HOL A;  2KC0 A;  3VY9 X;  5B5E O;  1ZHY A;  1GFP A;  2W80 C;  2Y0K A;  4LSE A;  1S5L O;  4O3Y A;  1Q9G A;  4AYI D;  4D64 A;  3KZI O;  1QJ9 A;  2WJR A;  3POR A;  4FUV A;  4AUI A;  3JCU O;  2POR A;  2JMM A;  2N2L A;  3VE2 A;  2J1N A;  3POU A;  4U9C A;  1HXU A;  3HOE A;  4Z3T A;  2ODJ A;  1PHO A;  2XE1 A;  2R8A A;  5DL5 A;  4QQ1 A;  3SZD A;  4CTD A;  7PRN A;  4FZL A;  4GCQ A;  3DZM A;  1E54 A;  4FRX A;  3FYX A;  2K0L A;  3LK2 B;  4O3W A;  2XMX A;  5IYU A;  4C00 A;  2XE2 A;  3SY7 A;  4N75 A;  4FRT A;  3UAQ A;  3VZU X;  2IWW A;  3VZT X;  2R89 A;  1YS5 A;  3PGR A;  2R88 A;  4N74 A;  2WVP A;  3T0S A;  4K3C A;  3VY8 X;  3AAE A;  8PRN A;  3C5O A;  3VE1 A;  4JFB A;  1ZHW A;  4O4X A;  4B61 A;  3WU2 O;  2LFU A;  1ORM A;  2K4T A;  2IWV A;  3AAE B;  4GF4 A;  5ADX K;  3PQU A;  4KRA A;  5G39 A;  4PR7 A;  2XTR A;  2X27 X;  4G76 A;  3PGU A;  4FMS A;  5KAI O;  4FT6 A;  1PRN A;  3A2S X;  4FQE A;  3QRC A;  4LSH A;  2J4U P;  5PRN A;  3UPG A;  4E1T A;  4AYM C;  3LK2 A;  4O3X B;  6PRN A;  2XE3 A;  2FGQ X;  3V8U A;  3EMN X;  3POX A;  3HW9 A;  3JTY A;  5EE2 A;  4AKM A;  3NJT A;  1HXT A;  3SYS A;  2XE5 A;  3PQS A;  5AFU L;  2GE4 A;  1H6S 1;  4UB8 O;  3BS0 A;  1BXW A;  2F1V A;  1OSM A;  2FGR A;  2F1T A;  2Y2X A;  1T1L A;  3AA1 A;  3LK3 A;  3O0E A;  3HWB A;  5TIS O;  4C4V A;  1IZN A;  3NSG A;  3GP6 A;  4N58 A;  2OMF A;  4RLB A;  1P4T A;  3PGS A;  1GFO A;  2ZFG A;  2Y7S A;  3AA1 B;  4KR4 A;  4O4U A;  3LK3 B;  4C4V B;  2KDY A;  2XG6 A;  2R4N A;  4FES A;  1IZN B;  4LSF A;  2YPV A;  1QJ8 A;  3G7G A;  4N59 A;  2YNK A;  4LSI A;  1MPF A;  4FOZ A;  4AZL A;  2XTQ A;  2R4O A;  4D65 A;  1ZHX A;  4UB6 O;  4E1S A;  4RJX A;  4AYD C;  2WJQ A;  5H2F O;  4AYE C;  3SY9 A;  2R4L A;  2ERV A;  4KR8 A;  3SZV A;  1THQ A;  2PRN A;  3PF1 A;  2R4P A;  5GTI O;  3T24 A;  4AFK A;  3AA6 A;  4IL6 O;  3RBH A;  4RLC A;  3PRN A;  3T20 A;  4XNL A;  3AAA B;  2MNH A;  3AA6 B;  3SYB A;  1HXX A;  3LK4 1;  3AA7 A;  4O3Z A;  4RJW A;  2ZLD A;  3TZG A;  5G38 A;  3LK4 2;  3BRY A;  2Y0H A;  3VZW X;  5DL8 A;  4AYN A;  5GV0 A;  3AA7 B;  3WI4 A;  4FSP A;  5KAF O;  5GTH O;  1GFN A;  2W81 C;  4F4B A;  2M07 A;  4GHB A;  4RL9 A;  4FZM A;  1MM5 A;  2QTK A;  1MM4 A;  1ZHT A;  3DA4 A;  2X9K A;  4O49 A;  4XNK A;  3UU2 A;  1BT9 A;  2O4V A;  3BRZ A;  4PJ0 O;  5DL6 A;  3K19 A;  2F1C X;  1GFM A;  4FZN A;  4D5U A;  2AXT O;  2N2M A;  3AA0 A;  5FVN A;  1QJP A;  4PUX A;  3QRA A;  1G90 A;  5AFU K;  3POQ A;  2Y0L A;  2LHF A;  2KXP A;  4G75 A;  4GCS A;  2M06 A;  5B66 O;  3AA0 B;  4C69 X;  3DWN A;  5G3A A;  2KZ7 A;  4BUM X;  3AAA A;  3KVD D;  3A0B O;  5E79 O;  3WI5 A;  5G26 A;  5JDP A;  4AKR A;  1Q9F A;  4K3B A;  3DWO X;  2KXP B;  1ZHZ A;  5D5D A;  5DL7 A;  1BH3 A;  2JQY A;  2KZ7 B;  3A0H O; 
#chains in the Genus database with same CATH homology
 5T5F A;  4AKR B;  4JCH A;  3DA3 A;  4FSO A;  1OPF A;  4GCP A;  2MHL A;  5ADX L;  1GFQ A;  3HOL A;  2KC0 A;  3VY9 X;  1ZHY A;  1GFP A;  2W80 C;  2Y0K A;  4LSE A;  4O3Y A;  4D64 A;  1Q9G A;  4AYI D;  1QJ9 A;  3POR A;  4FUV A;  4AUI A;  2POR A;  2JMM A;  2N2L A;  3VE2 A;  2J1N A;  3POU A;  4U9C A;  1HXU A;  3HOE A;  4Z3T A;  2ODJ A;  1PHO A;  2XE1 A;  5DL5 A;  3SZD A;  4QQ1 A;  7PRN A;  4FZL A;  4GCQ A;  1E54 A;  4FRX A;  3FYX A;  2K0L A;  3LK2 B;  4O3W A;  2XMX A;  5IYU A;  2XE2 A;  3SY7 A;  3UAQ A;  4FRT A;  3VZU X;  3VZT X;  3VY8 X;  1YS5 A;  3T0S A;  3AAE A;  8PRN A;  3C5O A;  3VE1 A;  4JFB A;  1ZHW A;  4O4X A;  4B61 A;  2LFU A;  1ORM A;  2K4T A;  4GF4 A;  3AAE B;  5ADX K;  3PQU A;  4KRA A;  2XTR A;  2X27 X;  4G76 A;  4FMS A;  4FT6 A;  1PRN A;  3A2S X;  2J4U P;  3QRC A;  4LSH A;  5PRN A;  3UPG A;  4E1T A;  4AYM C;  3LK2 A;  4O3X B;  6PRN A;  2XE3 A;  2FGQ X;  3V8U A;  3EMN X;  3POX A;  3HW9 A;  3JTY A;  5EE2 A;  4AKM A;  1HXT A;  3SYS A;  2XE5 A;  3PQS A;  5AFU L;  2GE4 A;  1H6S 1;  1BXW A;  2F1V A;  1OSM A;  2FGR A;  2F1T A;  2Y2X A;  3AA1 A;  3LK3 A;  3O0E A;  4LSF A;  3HWB A;  1IZN A;  3NSG A;  3GP6 A;  4N58 A;  2OMF A;  4RLB A;  1P4T A;  1GFO A;  2ZFG A;  2Y7S A;  3AA1 B;  4KR4 A;  4O4U A;  3LK3 B;  2KDY A;  2XG6 A;  4FES A;  1IZN B;  2YPV A;  1QJ8 A;  3G7G A;  4N59 A;  2YNK A;  4LSI A;  1MPF A;  4FOZ A;  4AZL A;  2XTQ A;  4D65 A;  1ZHX A;  4E1S A;  4RJX A;  4AYD C;  4AYE C;  3SY9 A;  2ERV A;  4KR8 A;  3SZV A;  1THQ A;  2PRN A;  3T24 A;  4AFK A;  3AA6 A;  3RBH A;  4RLC A;  3PRN A;  3T20 A;  4XNL A;  3AAA B;  2MNH A;  3AA6 B;  3SYB A;  1HXX A;  3LK4 1;  3AA7 A;  4O3Z A;  4RJW A;  2ZLD A;  3TZG A;  3LK4 2;  2Y0H A;  3VZW X;  5DL8 A;  4AYN A;  5GV0 A;  3AA7 B;  3WI4 A;  4FSP A;  1GFN A;  2W81 C;  4F4B A;  2M07 A;  4GHB A;  4RL9 A;  4FZM A;  1MM5 A;  2QTK A;  1MM4 A;  1ZHT A;  3DA4 A;  4O49 A;  4XNK A;  3UU2 A;  1BT9 A;  2O4V A;  5DL6 A;  3K19 A;  1GFM A;  4FZN A;  4D5U A;  2N2M A;  3AA0 A;  5FVN A;  1QJP A;  4PUX A;  3QRA A;  1G90 A;  3POQ A;  2Y0L A;  2LHF A;  2KXP A;  4G75 A;  4GCS A;  2M06 A;  3AA0 B;  4C69 X;  5AFU K;  2KZ7 A;  4BUM X;  3AAA A;  3KVD D;  5JDP A;  3WI5 A;  5G26 A;  4AKR A;  1Q9F A;  2KXP B;  1ZHZ A;  5D5D A;  5DL7 A;  1BH3 A;  2KZ7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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