2J3RA

The crystal structure of the bet3-trs31 heterodimer.
Total Genus 42
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
162
structure length
158
Chain Sequence
ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTKGDGVTEIRMRFIRRI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport
molecule keywords TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3
publication title The Architecture of the Multisubunit Trapp I Complex Suggests a Model for Vesicle Tethering.
pubmed doi rcsb
source organism Mus musculus
total genus 42
structure length 158
sequence length 162
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04051 TRAPP Transport protein particle (TRAPP) component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Trafficking protein particle complex subunit 3 2j3rA00
3KXCC 3CUED 3KXCA 3CUEB 2J3RA 3NJCA 2CFHC 2PWNA 2OSDA 2J3RB 2C0JA 2CFHA 2OSOA 1WC9A 2J3WD 2C0JB 2J3TA 2J3TB 1SZ7A 1WC8A 2J3WB 2BJNA
chains in the Genus database with same CATH superfamily
3D1MA 3KXCC 4MUQA 4MUSA 3CUED 1R44A 4OX3A 3N1RA 3N1OA 3N1FA 3KXCA 3N1GA 3K7HB 2WFQA 3K7IB 3CUEB 2J3RA 3NJCA 2CFHC 2WG3A 4MUTA 4D0YA 2PWNA 1TZPA 2VO9A 1LBUA 2OSDA 2J3RB 3N1QA 4NT9A 4F78A 4MURA 2C0JA 2CFHA 2OSOA 4OAKA 1WC9A 3N1PB 4OXDA 2J3WD 2C0JB 2IBGE 2WG4A 4OX5A 2J3TA 3K7GB 2WFXA 3MXWA 4C4MA 1VHHA 1U10A 3HO5H 3K7JB 2J3TB 4JIDA 1SZ7A 3N1MB 1WC8A 2J3WB 2WFRA 4MPHA 4C4NA 2BJNA 5HNMA 3M1NA
chains in the Genus database with same CATH topology
3KXCC 3CUED 3KXCA 3CUEB 2J3RA 3NJCA 2CFHC 2PWNA 2OSDA 2J3RB 2C0JA 2CFHA 2OSOA 1WC9A 2J3WD 2C0JB 2J3TA 2J3TB 1SZ7A 1WC8A 2J3WB 2BJNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KXC C;  3CUE D;  3KXC A;  3CUE B;  2J3R A;  3NJC A;  2CFH C;  2PWN A;  2OSD A;  2J3R B;  2C0J A;  2CFH A;  2OSO A;  1WC9 A;  2J3W D;  2C0J B;  2J3T A;  2J3T B;  1SZ7 A;  1WC8 A;  2J3W B;  2BJN A; 
#chains in the Genus database with same CATH topology
 3D1M A;  3KXC C;  4MUQ A;  4MUS A;  3CUE D;  1R44 A;  4OX3 A;  3N1R A;  3N1O A;  3N1F A;  3KXC A;  3N1G A;  3K7H B;  2WFQ A;  3K7I B;  3CUE B;  2J3R A;  3NJC A;  2CFH C;  2WG3 A;  4MUT A;  4D0Y A;  2PWN A;  1TZP A;  2VO9 A;  1LBU A;  2OSD A;  2J3R B;  3N1Q A;  4NT9 A;  4F78 A;  4MUR A;  2C0J A;  2CFH A;  2OSO A;  4OAK A;  1WC9 A;  3N1P B;  4OXD A;  2J3W D;  2C0J B;  2IBG E;  2WG4 A;  4OX5 A;  2J3T A;  3K7G B;  2WFX A;  3MXW A;  4C4M A;  1VHH A;  1U10 A;  3HO5 H;  3K7J B;  2J3T B;  4JID A;  1SZ7 A;  3N1M B;  1WC8 A;  2J3W B;  2WFR A;  4MPH A;  4C4N A;  2BJN A;  5HNM A;  3M1N A; 
#chains in the Genus database with same CATH homology
 3KXC C;  3CUE D;  3KXC A;  3CUE B;  2J3R A;  3NJC A;  2CFH C;  2PWN A;  2OSD A;  2J3R B;  2C0J A;  2CFH A;  2OSO A;  1WC9 A;  2J3W D;  2C0J B;  2J3T A;  2J3T B;  1SZ7 A;  1WC8 A;  2J3W B;  2BJN A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...