2J3RB

The crystal structure of the bet3-trs31 heterodimer.
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
157
structure length
157
Chain Sequence
PKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport
molecule keywords TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3
publication title The Architecture of the Multisubunit Trapp I Complex Suggests a Model for Vesicle Tethering.
pubmed doi rcsb
source organism Mus musculus
total genus 43
structure length 157
sequence length 157
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF04051 TRAPP Transport protein particle (TRAPP) component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Trafficking protein particle complex subunit 3 2j3rB00
3KXCC 2J3WD 2CFHC 1WC9A 2J3RB 2OSOA 3CUED 1WC8A 2C0JB 2J3RA 3KXCA 2CFHA 3NJCA 2PWNA 2C0JA 2J3TB 2J3WB 2OSDA 2J3TA 1SZ7A 3CUEB 2BJNA
chains in the Genus database with same CATH superfamily
3N1FA 4MUSA 3KXCC 2J3WD 2CFHC 1WC9A 3HO5H 4OX5A 3N1MB 4MURA 2J3RB 4C4NA 3N1QA 2VO9A 2WG3A 2OSOA 3M1NA 3CUED 3K7JB 4JIDA 3N1RA 2WFXA 1WC8A 2C0JB 2J3RA 3K7IB 3N1OA 3KXCA 4MUQA 2CFHA 2WG4A 3NJCA 4NT9A 4OAKA 3D1MA 4D0YA 4MPHA 2IBGE 1LBUA 4OXDA 4OX3A 1TZPA 3MXWA 3K7GB 2PWNA 2C0JA 5HNMA 1U10A 2J3TB 2J3WB 1R44A 3N1PB 4C4MA 2OSDA 4F78A 3K7HB 3N1GA 2WFQA 4MUTA 2J3TA 1SZ7A 3CUEB 2BJNA 1VHHA 2WFRA
chains in the Genus database with same CATH topology
3KXCC 2J3WD 2CFHC 1WC9A 2J3RB 2OSOA 3CUED 1WC8A 2C0JB 2J3RA 3KXCA 2CFHA 3NJCA 2PWNA 2C0JA 2J3TB 2J3WB 2OSDA 2J3TA 1SZ7A 3CUEB 2BJNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KXC C;  2J3W D;  2CFH C;  1WC9 A;  2J3R B;  2OSO A;  3CUE D;  1WC8 A;  2C0J B;  2J3R A;  3KXC A;  2CFH A;  3NJC A;  2PWN A;  2C0J A;  2J3T B;  2J3W B;  2OSD A;  2J3T A;  1SZ7 A;  3CUE B;  2BJN A; 
#chains in the Genus database with same CATH topology
 3N1F A;  4MUS A;  3KXC C;  2J3W D;  2CFH C;  1WC9 A;  3HO5 H;  4OX5 A;  3N1M B;  4MUR A;  2J3R B;  4C4N A;  3N1Q A;  2VO9 A;  2WG3 A;  2OSO A;  3M1N A;  3CUE D;  3K7J B;  4JID A;  3N1R A;  2WFX A;  1WC8 A;  2C0J B;  2J3R A;  3K7I B;  3N1O A;  3KXC A;  4MUQ A;  2CFH A;  2WG4 A;  3NJC A;  4NT9 A;  4OAK A;  3D1M A;  4D0Y A;  4MPH A;  2IBG E;  1LBU A;  4OXD A;  4OX3 A;  1TZP A;  3MXW A;  3K7G B;  2PWN A;  2C0J A;  5HNM A;  1U10 A;  2J3T B;  2J3W B;  1R44 A;  3N1P B;  4C4M A;  2OSD A;  4F78 A;  3K7H B;  3N1G A;  2WFQ A;  4MUT A;  2J3T A;  1SZ7 A;  3CUE B;  2BJN A;  1VHH A;  2WFR A; 
#chains in the Genus database with same CATH homology
 3KXC C;  2J3W D;  2CFH C;  1WC9 A;  2J3R B;  2OSO A;  3CUE D;  1WC8 A;  2C0J B;  2J3R A;  3KXC A;  2CFH A;  3NJC A;  2PWN A;  2C0J A;  2J3T B;  2J3W B;  2OSD A;  2J3T A;  1SZ7 A;  3CUE B;  2BJN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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