2J3WB

The crystal structure of the bet3-trs31-sedlin complex.
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
167
structure length
167
Chain Sequence
KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRETKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIARDKALDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport
molecule keywords TRAFFICKING PROTEIN PARTICLE COMPLEX PROTEIN 2
publication title The Architecture of the Multisubunit Trapp I Complex Suggests a Model for Vesicle Tethering.
pubmed doi rcsb
source organism Mus musculus
total genus 49
structure length 167
sequence length 167
chains with identical sequence F
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF04051 TRAPP Transport protein particle (TRAPP) component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Trafficking protein particle complex subunit 3 2j3wB00
2J3WB 2J3RA 2J3TA 1WC9A 2OSDA 2PWNA 2J3RB 2BJNA 3KXCC 2J3TB 3CUEB 2J3WD 3NJCA 2CFHC 3KXCA 2C0JA 2OSOA 1WC8A 2C0JB 2CFHA 3CUED 1SZ7A
chains in the Genus database with same CATH superfamily
2J3WB 2WG3A 4OX5A 3K7HB 2J3RA 3N1RA 3N1MB 4OXDA 1U10A 3N1QA 4OX3A 2J3TA 1WC9A 2IBGE 2OSDA 3N1GA 3D1MA 2PWNA 2J3RB 2BJNA 3KXCC 3MXWA 4MUQA 4MPHA 4MUTA 2J3TB 2WFRA 3CUEB 2J3WD 3N1PB 4JIDA 3K7JB 4OAKA 3NJCA 2CFHC 2VO9A 3K7IB 3M1NA 3K7GB 4C4MA 3KXCA 2C0JA 4F78A 1VHHA 2OSOA 1WC8A 4D0YA 3HO5H 1LBUA 1R44A 1TZPA 2C0JB 4NT9A 4C4NA 3N1OA 2WG4A 2CFHA 3CUED 2WFXA 2WFQA 3N1FA 5HNMA 4MURA 4MUSA 1SZ7A
chains in the Genus database with same CATH topology
2J3WB 2J3RA 2J3TA 1WC9A 2OSDA 2PWNA 2J3RB 2BJNA 3KXCC 2J3TB 3CUEB 2J3WD 3NJCA 2CFHC 3KXCA 2C0JA 2OSOA 1WC8A 2C0JB 2CFHA 3CUED 1SZ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J3W B;  2J3R A;  2J3T A;  1WC9 A;  2OSD A;  2PWN A;  2J3R B;  2BJN A;  3KXC C;  2J3T B;  3CUE B;  2J3W D;  3NJC A;  2CFH C;  3KXC A;  2C0J A;  2OSO A;  1WC8 A;  2C0J B;  2CFH A;  3CUE D;  1SZ7 A; 
#chains in the Genus database with same CATH topology
 2J3W B;  2WG3 A;  4OX5 A;  3K7H B;  2J3R A;  3N1R A;  3N1M B;  4OXD A;  1U10 A;  3N1Q A;  4OX3 A;  2J3T A;  1WC9 A;  2IBG E;  2OSD A;  3N1G A;  3D1M A;  2PWN A;  2J3R B;  2BJN A;  3KXC C;  3MXW A;  4MUQ A;  4MPH A;  4MUT A;  2J3T B;  2WFR A;  3CUE B;  2J3W D;  3N1P B;  4JID A;  3K7J B;  4OAK A;  3NJC A;  2CFH C;  2VO9 A;  3K7I B;  3M1N A;  3K7G B;  4C4M A;  3KXC A;  2C0J A;  4F78 A;  1VHH A;  2OSO A;  1WC8 A;  4D0Y A;  3HO5 H;  1LBU A;  1R44 A;  1TZP A;  2C0J B;  4NT9 A;  4C4N A;  3N1O A;  2WG4 A;  2CFH A;  3CUE D;  2WFX A;  2WFQ A;  3N1F A;  5HNM A;  4MUR A;  4MUS A;  1SZ7 A; 
#chains in the Genus database with same CATH homology
 2J3W B;  2J3R A;  2J3T A;  1WC9 A;  2OSD A;  2PWN A;  2J3R B;  2BJN A;  3KXC C;  2J3T B;  3CUE B;  2J3W D;  3NJC A;  2CFH C;  3KXC A;  2C0J A;  2OSO A;  1WC8 A;  2C0J B;  2CFH A;  3CUE D;  1SZ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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